FFCP PHASE1:Mm9::chr11:49715305..49715397,+: Difference between revisions
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{{FFCP|EntrezGene=74563|HGNC=|MCL_coexpression_id=905|UniProt=B1ATE5,Q9D300|association_with_transcript=0bp_to_ENSMUST00000093141,ENSMUST00000093142,NM_029004,uc007irj.1,uc011xue.1_5end|description=CAGE_peak_1_at_Rasgef1c_5end|id=chr11:49715305..49715397,+|ontology_enrichment_celltype=CL:0000221!3.70e-18!44;CL:0000133!3.70e-18!44;CL:0002319!5.72e-18!43;CL:0000540!1.51e-15!33;CL:0000047!1.51e-15!33;CL:0000031!1.51e-15!33;CL:0000404!1.51e-15!33;CL:0000055!8.70e-15!50;CL:0000393!5.43e-13!39;CL:0000211!5.43e-13!39;CL:0000117!3.19e-10!23;CL:0000337!3.19e-10!23;CL:0000107!3.44e-07!9|ontology_enrichment_celltype_v019_2=CL:0000221,4.81e-22,44;CL:0000133,4.81e-22,44;CL:0002319,8.83e-22,43;CL:0000540,6.61e-19,33;CL:0000047,6.61e-19,33;CL:0000031,6.61e-19,33;CL:0000404,6.61e-19,33;CL:0000393,2.42e-16,39;CL:0000211,2.42e-16,39;CL:0000117,3.37e-12,23;CL:0000337,3.37e-12,23;CL:0002321,7.21e-10,70;CL:0000107,3.77e-09,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.25e-31!75;UBERON:0001016!2.25e-31!75;UBERON:0001017!7.57e-30!73;UBERON:0005743!7.57e-30!73;UBERON:0004121!4.14e-27!102;UBERON:0000924!4.14e-27!102;UBERON:0006601!4.14e-27!102;UBERON:0002346!2.61e-19!71;UBERON:0003075!2.61e-19!71;UBERON:0007284!2.61e-19!71;UBERON:0001049!4.84e-18!52;UBERON:0005068!4.84e-18!52;UBERON:0006241!4.84e-18!52;UBERON:0007135!4.84e-18!52;UBERON:0000955!1.45e-16!50;UBERON:0006238!1.45e-16!50;UBERON:0002020!4.58e-16!34;UBERON:0002616!5.95e-16!49;UBERON:0000033!8.45e-15!63;UBERON:0003080!2.95e-13!40;UBERON:0002791!4.48e-13!29;UBERON:0003528!4.48e-13!29;UBERON:0001893!4.48e-13!29;UBERON:0002780!5.74e-13!39;UBERON:0001890!5.74e-13!39;UBERON:0006240!5.74e-13!39;UBERON:0003056!3.88e-12!49;UBERON:0000956!7.72e-09!21;UBERON:0001869!7.72e-09!21;UBERON:0000203!7.72e-09!21;UBERON:0002619!8.29e-09!17;UBERON:0000010!1.85e-08!11;UBERON:0002021!5.08e-08!10;UBERON:0000411!5.08e-08!10;UBERON:0001950!5.08e-08!10;UBERON:0002410!3.44e-07!9;UBERON:0000468!6.43e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.35e-37,75;UBERON:0001017,2.28e-35,73;UBERON:0004121,1.37e-27,95;UBERON:0000924,1.37e-27,95;UBERON:0006601,1.37e-27,95;UBERON:0000073,1.51e-21,54;UBERON:0001049,2.43e-20,52;UBERON:0005068,2.43e-20,52;UBERON:0006241,2.43e-20,52;UBERON:0007135,2.43e-20,52;UBERON:0002346,1.75e-19,64;UBERON:0003075,1.75e-19,64;UBERON:0007284,1.75e-19,64;UBERON:0002020,4.39e-19,34;UBERON:0000955,1.03e-16,47;UBERON:0006238,1.03e-16,47;UBERON:0002616,5.96e-16,46;UBERON:0010371,1.22e-15,73;UBERON:0003528,3.83e-15,29;UBERON:0002791,3.83e-15,29;UBERON:0001893,3.83e-15,29;UBERON:0003080,8.89e-14,40;UBERON:0002780,2.13e-13,39;UBERON:0001890,2.13e-13,39;UBERON:0006240,2.13e-13,39;UBERON:0010314,5.95e-12,92;UBERON:0003056,3.35e-11,49;UBERON:0000010,7.43e-11,11;UBERON:0002619,2.02e-10,17;UBERON:0002021,2.88e-10,10;UBERON:0000411,2.88e-10,10;UBERON:0001950,2.88e-10,10;UBERON:0000956,1.33e-09,21;UBERON:0001869,1.33e-09,21;UBERON:0000203,1.33e-09,21;UBERON:0002410,3.77e-09,9;UBERON:0003076,1.67e-07,12;UBERON:0003057,1.67e-07,12;UBERON:0002420,4.62e-07,8;UBERON:0007245,4.62e-07,8;UBERON:0010009,4.62e-07,8;UBERON:0010011,4.62e-07,8;UBERON:0000454,4.62e-07,8|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6648780945253,1.41732687172878,0.699561878128147,0.157731082679119,0.137114433605739,0.42438965179803,3.06155844543851,0,0,0,0.22940928106717,0,0,0,0.190023419456374,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,7.84890562969608,0.878744730937887,1.74986909166855,1.95980990275508,4.31257693094915,0,0,0.336093799142464,2.82985379639542,2.29226751951005,0.515672092277442,12.9482534950143,19.5726662330652,15.2119536841483,0.338844532069132,0,0,0,0,5.69240209984969,3.07374644257244,0.311068836925433,1.35005938331691,0.630974884054146,17.424710048632,17.2277461942259,2.69479758272899,1.34183659425531,2.75765635983006,5.50579404996943,3.83062014255563,4.6081959976873,15.0350368012421,13.0827330351446,18.2319679694866,6.14202597803038,18.0084035210138,11.1542720877071,20.9186295686304,18.0812034614861,15.0983551118493,17.7199292399651,31.4377690044228,0,0,0.679971333707751,0.539703191637817,0,0,0.842666520790511,0,0,0,1.83096445709685,0,0,0,0,0,0,0.68510327831436,0.258937883647172,0.742210695324124,0.520455980298408,1.52232739156071,0.922461989024234,1.80867168663147,2.58695155698551,0.753999547978053,0,0.86759614151947,0.884610551949874,1.29413479957927,0,0,1.86391761218122,4.09893115816166,6.91174132484402,0.255457055208591,0,0,0,2.54644086988199,11.4375150704657,12.942398267625,23.8139318663419,23.2701066170601,5.194701113989,10.2211995732687,0.407357455401265,0,0,0.420883711772948,0,0.229902104433473,0.540186389416048,0.452114453507145,1.63287597963187,0.768682321709099,1.78033276663485,1.55222022443409,0,0.189106080167819,0.703804496655795,0,0,0.348252166522167,0.61734640922383,0.59710280045548,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0.350296027101508,0,0.32833492815819,0.56748166682099,0.584799949701329,0,0.536825675041487,1.05144974282064,6.27718135513635,0,0.528901133327089,0,0.232236671860439,0,0.403367049246685,0,0.190225626112559,0.474529061544512,0.823494773620054,1.00534083520108,0.596869416123452,0.38992817423824,0,0.648414149624083,0.398282546508734,0,0,0,0,0.387904974335251,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.369506380333209,0.189491411770485,0,0,0,0,0,0.195133647857799,0,0.221464689648775,0.637819074629948,0.491589944147214,0.518054945597687,0.144649058581512,0,0.54390568381871,0,0,3.21101179975584,4.21962071731931,0,1.76729649043061,11.9893123378178,7.41833614163613,34.0368968417822,62.8487938615212,70.8499783582013,97.6614031221472,24.2886421004937,16.6585839009448,27.6701444562566,18.9579576688866,0,0.712262414669021,0.325773918707152,0.164970122972535,0,0.242780636154981,0,0.565815239267694,0.295301892880773,0.307435147943927,1.55056975900933,0.363533729477506,0,0.316036757935816,0,0,1.02131881726136,0,0.388076051348264,0.643011105094777,0.532020700926821,1.42695054081656,0.987294123612726,3.04464949114599,0,0,1.10264199027481,0.65954501176592,0.968786560175433,0.120625849856312,0.238744688006273,0.328281799490123,0.582961673259701,4.63563255026274,0.512612642393558,0,0,0.753473828018764,0.546776910884101,0.915112692826091,0,0,0,0.954670618015114,0.158167996790568,0.203319467126849,0.108005340821801,0.627264888043406,0.218362563746178,0.674321731924103,0.826534557253359,2.6175594198403,0.648074866458964,0,0.56369293868419,1.94371509857172,2.31641886639937,4.4723773319131,3.09983576346555,4.22390313726945,3.87278887530988,9.50492009360836,4.71867049915699,0,1.15212002503146,0,0.202725215290164,0.205421914329655,0.25984164595559,0,0,0,0,0.100966449948148,0,0.100826185136841,0.0974578807397524,0,0.116876902181569,0.906921534460845,0,0,0.167884616364078,0.772758376128762,0,0.549454872801795,0.857473516316263,0.501572104035363,20.8958181768315,23.476587061866,15.4681788628637,29.3868941807706,30.1436308699083,41.5466643564335,29.0259675099676,23.8670237708837,25.8291173120997,30.5478583933574,0.93408612825759,0.798049746802062,1.70733605754134,0.729320151204882,2.09613162627982,2.5738091183002,2.889207461421,1.64828045791115,2.24643446714271,3.28506375292937,2.02783439912192,1.69763707247469,2.1537546718073,2.81710670581425,2.1825478203133,1.90517476513229,3.70829843023538,2.50781986602817,0.824171801606613,1.76638704161277,3.42869252385415,1.4198064492747,2.38436189947321,4.79643174886684,1.78807822789128,2.62305284464197,2.37806364734604,1.8414879800649,2.58027816307137,0.561142271657738,2.84724043498018,3.64466584789585,2.86461730218783,1.85924209423159,2.12197272079256,4.74640098082097,0.935726433781634,2.14871054048298,1.53030665655075,1.54413993383661,1.39120701372253|short_description=p1@Rasgef1c}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=74563 | |||
|HGNC= | |||
|MCL_coexpression_id=905 | |||
|TSSclassifier=NA | |||
|UniProt=B1ATE5,Q9D300 | |||
|association_with_transcript=0bp_to_ENSMUST00000093141,ENSMUST00000093142,NM_029004,uc007irj.1,uc011xue.1_5end | |||
|cluster_id=chr11:49715305..49715397,+ | |||
|description=CAGE_peak_1_at_Rasgef1c_5end | |||
|id=chr11:49715305..49715397,+ | |||
|ontology_enrichment_celltype=CL:0000221!3.70e-18!44;CL:0000133!3.70e-18!44;CL:0002319!5.72e-18!43;CL:0000540!1.51e-15!33;CL:0000047!1.51e-15!33;CL:0000031!1.51e-15!33;CL:0000404!1.51e-15!33;CL:0000055!8.70e-15!50;CL:0000393!5.43e-13!39;CL:0000211!5.43e-13!39;CL:0000117!3.19e-10!23;CL:0000337!3.19e-10!23;CL:0000107!3.44e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.81e-22,44;CL:0000133,4.81e-22,44;CL:0002319,8.83e-22,43;CL:0000540,6.61e-19,33;CL:0000047,6.61e-19,33;CL:0000031,6.61e-19,33;CL:0000404,6.61e-19,33;CL:0000393,2.42e-16,39;CL:0000211,2.42e-16,39;CL:0000117,3.37e-12,23;CL:0000337,3.37e-12,23;CL:0002321,7.21e-10,70;CL:0000107,3.77e-09,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.25e-31!75;UBERON:0001016!2.25e-31!75;UBERON:0001017!7.57e-30!73;UBERON:0005743!7.57e-30!73;UBERON:0004121!4.14e-27!102;UBERON:0000924!4.14e-27!102;UBERON:0006601!4.14e-27!102;UBERON:0002346!2.61e-19!71;UBERON:0003075!2.61e-19!71;UBERON:0007284!2.61e-19!71;UBERON:0001049!4.84e-18!52;UBERON:0005068!4.84e-18!52;UBERON:0006241!4.84e-18!52;UBERON:0007135!4.84e-18!52;UBERON:0000955!1.45e-16!50;UBERON:0006238!1.45e-16!50;UBERON:0002020!4.58e-16!34;UBERON:0002616!5.95e-16!49;UBERON:0000033!8.45e-15!63;UBERON:0003080!2.95e-13!40;UBERON:0002791!4.48e-13!29;UBERON:0003528!4.48e-13!29;UBERON:0001893!4.48e-13!29;UBERON:0002780!5.74e-13!39;UBERON:0001890!5.74e-13!39;UBERON:0006240!5.74e-13!39;UBERON:0003056!3.88e-12!49;UBERON:0000956!7.72e-09!21;UBERON:0001869!7.72e-09!21;UBERON:0000203!7.72e-09!21;UBERON:0002619!8.29e-09!17;UBERON:0000010!1.85e-08!11;UBERON:0002021!5.08e-08!10;UBERON:0000411!5.08e-08!10;UBERON:0001950!5.08e-08!10;UBERON:0002410!3.44e-07!9;UBERON:0000468!6.43e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.35e-37,75;UBERON:0001017,2.28e-35,73;UBERON:0004121,1.37e-27,95;UBERON:0000924,1.37e-27,95;UBERON:0006601,1.37e-27,95;UBERON:0000073,1.51e-21,54;UBERON:0001049,2.43e-20,52;UBERON:0005068,2.43e-20,52;UBERON:0006241,2.43e-20,52;UBERON:0007135,2.43e-20,52;UBERON:0002346,1.75e-19,64;UBERON:0003075,1.75e-19,64;UBERON:0007284,1.75e-19,64;UBERON:0002020,4.39e-19,34;UBERON:0000955,1.03e-16,47;UBERON:0006238,1.03e-16,47;UBERON:0002616,5.96e-16,46;UBERON:0010371,1.22e-15,73;UBERON:0003528,3.83e-15,29;UBERON:0002791,3.83e-15,29;UBERON:0001893,3.83e-15,29;UBERON:0003080,8.89e-14,40;UBERON:0002780,2.13e-13,39;UBERON:0001890,2.13e-13,39;UBERON:0006240,2.13e-13,39;UBERON:0010314,5.95e-12,92;UBERON:0003056,3.35e-11,49;UBERON:0000010,7.43e-11,11;UBERON:0002619,2.02e-10,17;UBERON:0002021,2.88e-10,10;UBERON:0000411,2.88e-10,10;UBERON:0001950,2.88e-10,10;UBERON:0000956,1.33e-09,21;UBERON:0001869,1.33e-09,21;UBERON:0000203,1.33e-09,21;UBERON:0002410,3.77e-09,9;UBERON:0003076,1.67e-07,12;UBERON:0003057,1.67e-07,12;UBERON:0002420,4.62e-07,8;UBERON:0007245,4.62e-07,8;UBERON:0010009,4.62e-07,8;UBERON:0010011,4.62e-07,8;UBERON:0000454,4.62e-07,8 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6648780945253,1.41732687172878,0.699561878128147,0.157731082679119,0.137114433605739,0.42438965179803,3.06155844543851,0,0,0,0.22940928106717,0,0,0,0.190023419456374,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,7.84890562969608,0.878744730937887,1.74986909166855,1.95980990275508,4.31257693094915,0,0,0.336093799142464,2.82985379639542,2.29226751951005,0.515672092277442,12.9482534950143,19.5726662330652,15.2119536841483,0.338844532069132,0,0,0,0,5.69240209984969,3.07374644257244,0.311068836925433,1.35005938331691,0.630974884054146,17.424710048632,17.2277461942259,2.69479758272899,1.34183659425531,2.75765635983006,5.50579404996943,3.83062014255563,4.6081959976873,15.0350368012421,13.0827330351446,18.2319679694866,6.14202597803038,18.0084035210138,11.1542720877071,20.9186295686304,18.0812034614861,15.0983551118493,17.7199292399651,31.4377690044228,0,0,0.679971333707751,0.539703191637817,0,0,0.842666520790511,0,0,0,1.83096445709685,0,0,0,0,0,0,0.68510327831436,0.258937883647172,0.742210695324124,0.520455980298408,1.52232739156071,0.922461989024234,1.80867168663147,2.58695155698551,0.753999547978053,0,0.86759614151947,0.884610551949874,1.29413479957927,0,0,1.86391761218122,4.09893115816166,6.91174132484402,0.255457055208591,0,0,0,2.54644086988199,11.4375150704657,12.942398267625,23.8139318663419,23.2701066170601,5.194701113989,10.2211995732687,0.407357455401265,0,0,0.420883711772948,0,0.229902104433473,0.540186389416048,0.452114453507145,1.63287597963187,0.768682321709099,1.78033276663485,1.55222022443409,0,0.189106080167819,0.703804496655795,0,0,0.348252166522167,0.61734640922383,0.59710280045548,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0.350296027101508,0,0.32833492815819,0.56748166682099,0.584799949701329,0,0.536825675041487,1.05144974282064,6.27718135513635,0,0.528901133327089,0,0.232236671860439,0,0.403367049246685,0,0.190225626112559,0.474529061544512,0.823494773620054,1.00534083520108,0.596869416123452,0.38992817423824,0,0.648414149624083,0.398282546508734,0,0,0,0,0.387904974335251,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.369506380333209,0.189491411770485,0,0,0,0,0,0.195133647857799,0,0.221464689648775,0.637819074629948,0.491589944147214,0.518054945597687,0.144649058581512,0,0.54390568381871,0,0,3.21101179975584,4.21962071731931,0,1.76729649043061,11.9893123378178,7.41833614163613,34.0368968417822,62.8487938615212,70.8499783582013,97.6614031221472,24.2886421004937,16.6585839009448,27.6701444562566,18.9579576688866,0,0.712262414669021,0.325773918707152,0.164970122972535,0,0.242780636154981,0,0.565815239267694,0.295301892880773,0.307435147943927,1.55056975900933,0.363533729477506,0,0.316036757935816,0,0,1.02131881726136,0,0.388076051348264,0.643011105094777,0.532020700926821,1.42695054081656,0.987294123612726,3.04464949114599,0,0,1.10264199027481,0.65954501176592,0.968786560175433,0.120625849856312,0.238744688006273,0.328281799490123,0.582961673259701,4.63563255026274,0.512612642393558,0,0,0.753473828018764,0.546776910884101,0.915112692826091,0,0,0,0.954670618015114,0.158167996790568,0.203319467126849,0.108005340821801,0.627264888043406,0.218362563746178,0.674321731924103,0.826534557253359,2.6175594198403,0.648074866458964,0,0.56369293868419,1.94371509857172,2.31641886639937,4.4723773319131,3.09983576346555,4.22390313726945,3.87278887530988,9.50492009360836,4.71867049915699,0,1.15212002503146,0,0.202725215290164,0.205421914329655,0.25984164595559,0,0,0,0,0.100966449948148,0,0.100826185136841,0.0974578807397524,0,0.116876902181569,0.906921534460845,0,0,0.167884616364078,0.772758376128762,0,0.549454872801795,0.857473516316263,0.501572104035363,20.8958181768315,23.476587061866,15.4681788628637,29.3868941807706,30.1436308699083,41.5466643564335,29.0259675099676,23.8670237708837,25.8291173120997,30.5478583933574,0.93408612825759,0.798049746802062,1.70733605754134,0.729320151204882,2.09613162627982,2.5738091183002,2.889207461421,1.64828045791115,2.24643446714271,3.28506375292937,2.02783439912192,1.69763707247469,2.1537546718073,2.81710670581425,2.1825478203133,1.90517476513229,3.70829843023538,2.50781986602817,0.824171801606613,1.76638704161277,3.42869252385415,1.4198064492747,2.38436189947321,4.79643174886684,1.78807822789128,2.62305284464197,2.37806364734604,1.8414879800649,2.58027816307137,0.561142271657738,2.84724043498018,3.64466584789585,2.86461730218783,1.85924209423159,2.12197272079256,4.74640098082097,0.935726433781634,2.14871054048298,1.53030665655075,1.54413993383661,1.39120701372253 | |||
|short_description=p1@Rasgef1c | |||
}} |
Latest revision as of 14:38, 1 October 2015
Short description: | p1@Rasgef1c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rasgef1c_5end |
Coexpression cluster: | MCL_coexpression_mm9:905 |
Association with transcript: | 0bp_to_ENSMUST00000093141, ENSMUST00000093142, NM_029004, uc007irj.1, uc011xue.1_5end |
EntrezGene: | Rasgef1c |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.81e-22 | 44 |
neurectodermal cell | 4.81e-22 | 44 |
neural cell | 8.83e-22 | 43 |
neuron | 6.61e-19 | 33 |
neuronal stem cell | 6.61e-19 | 33 |
neuroblast | 6.61e-19 | 33 |
electrically signaling cell | 6.61e-19 | 33 |
electrically responsive cell | 2.42e-16 | 39 |
electrically active cell | 2.42e-16 | 39 |
CNS neuron (sensu Vertebrata) | 3.37e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.37e-12 | 23 |
embryonic cell | 7.21e-10 | 70 |
autonomic neuron | 3.77e-09 | 9 |