FFCP PHASE1:Mm9::chr5:123582660..123582687,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr5:123582660..123582687,-
|short_description=p3@Rhof
|description=CAGE_peak_3_at_Rhof_5end
|association_with_transcript=13bp_to_ENSMUST00000031401_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=23912 | |EntrezGene=23912 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BYP3 | |UniProt=Q8BYP3 | ||
|association_with_transcript=13bp_to_ENSMUST00000031401_5end | |||
|cluster_id=chr5:123582660..123582687,- | |||
|description=CAGE_peak_3_at_Rhof_5end | |||
|id=chr5:123582660..123582687,- | |||
|ontology_enrichment_celltype=CL:0000117!3.01e-10!23;CL:0000337!3.01e-10!23;CL:0000791!7.97e-08!9;CL:0000789!7.97e-08!9;CL:0002420!7.97e-08!9;CL:0002419!7.97e-08!9;CL:0000790!7.97e-08!9;CL:0000624!3.61e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.28e-19,9;CL:0000789,1.28e-19,9;CL:0002420,1.28e-19,9;CL:0002419,1.28e-19,9;CL:0000790,1.28e-19,9;CL:0000624,9.79e-18,8;CL:0000084,1.08e-15,11;CL:0000827,1.08e-15,11;CL:0000838,3.18e-14,12;CL:0000893,1.72e-13,6;CL:0002489,1.72e-13,6;CL:0000898,1.72e-13,6;CL:0000809,1.72e-13,6;CL:0000810,1.72e-13,6;CL:0000895,1.72e-13,6;CL:0000808,1.72e-13,6;CL:0000894,1.72e-13,6;CL:0000806,1.72e-13,6;CL:0000807,1.72e-13,6;CL:0000805,1.72e-13,6;CL:0002425,1.72e-13,6;CL:0002436,1.72e-13,6;CL:0002427,1.72e-13,6;CL:0002428,1.72e-13,6;CL:0002429,1.72e-13,6;CL:0002433,1.72e-13,6;CL:0002431,1.72e-13,6;CL:0002432,1.72e-13,6;CL:0000542,5.59e-13,13;CL:0000051,5.59e-13,13;CL:0000117,1.37e-09,23;CL:0000337,1.37e-09,23;CL:0000738,1.79e-09,17;CL:0002087,1.79e-09,17;CL:0000034,1.59e-07,97;CL:0002031,3.17e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!2.76e-17!34;UBERON:0001049!2.69e-15!52;UBERON:0005068!2.69e-15!52;UBERON:0006241!2.69e-15!52;UBERON:0007135!2.69e-15!52;UBERON:0002791!3.16e-14!29;UBERON:0003528!3.16e-14!29;UBERON:0001893!3.16e-14!29;UBERON:0000064!6.86e-14!99;UBERON:0002616!7.45e-14!49;UBERON:0001017!2.20e-13!73;UBERON:0005743!2.20e-13!73;UBERON:0000955!3.48e-13!50;UBERON:0006238!3.48e-13!50;UBERON:0000073!9.72e-13!75;UBERON:0001016!9.72e-13!75;UBERON:0003080!1.13e-12!40;UBERON:0002780!2.89e-12!39;UBERON:0001890!2.89e-12!39;UBERON:0006240!2.89e-12!39;UBERON:0007811!2.27e-11!86;UBERON:0000956!1.86e-10!21;UBERON:0001869!1.86e-10!21;UBERON:0000203!1.86e-10!21;UBERON:0000153!1.02e-09!94;UBERON:0003056!1.74e-08!49;UBERON:0002619!2.69e-08!17;UBERON:0000033!3.26e-08!63;UBERON:0002346!3.92e-08!71;UBERON:0003075!3.92e-08!71;UBERON:0007284!3.92e-08!71;UBERON:0002021!7.32e-08!10;UBERON:0000411!7.32e-08!10;UBERON:0001950!7.32e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,3.74e-23,34;UBERON:0003528,1.63e-17,29;UBERON:0002791,1.63e-17,29;UBERON:0001893,1.63e-17,29;UBERON:0000073,7.04e-17,54;UBERON:0002021,9.72e-17,10;UBERON:0000411,9.72e-17,10;UBERON:0001950,9.72e-17,10;UBERON:0000956,3.58e-15,21;UBERON:0001869,3.58e-15,21;UBERON:0000203,3.58e-15,21;UBERON:0001049,1.03e-14,52;UBERON:0005068,1.03e-14,52;UBERON:0006241,1.03e-14,52;UBERON:0007135,1.03e-14,52;UBERON:0001017,2.26e-14,73;UBERON:0002619,7.31e-14,17;UBERON:0001016,8.16e-14,75;UBERON:0002780,1.81e-13,39;UBERON:0001890,1.81e-13,39;UBERON:0006240,1.81e-13,39;UBERON:0003080,5.06e-13,40;UBERON:0002346,6.17e-11,64;UBERON:0003075,6.17e-11,64;UBERON:0007284,6.17e-11,64;UBERON:0002616,9.44e-11,46;UBERON:0000955,1.98e-10,47;UBERON:0006238,1.98e-10,47;UBERON:0003056,7.89e-10,49;UBERON:0004121,1.49e-09,95;UBERON:0000924,1.49e-09,95;UBERON:0006601,1.49e-09,95;UBERON:0010371,6.18e-09,73;UBERON:0001948,2.90e-07,5;UBERON:0002315,2.90e-07,5 | |||
|phase1_expression=0,0.697950815278722,0.454999239389536,0.30246421130683,2.00358291978539,0.33575854382378,0.233612640595526,3.61545305636414,19.7104211012333,14.7460651582856,3.08192342805909,2.23362045186942,2.05440875917447,2.71003247498892,0.333109761815663,0.202475267389826,0,2.20823515750766,0.959801035240171,0.84877930359606,0.425216450755349,0.198581902401771,0,0.47997726838022,0.22940928106717,0,0,0.646413698057667,0.570070258369122,0,0.443461021310609,0,0,0,0,0,0.204169356262369,0.837063261473815,0.7813353445238,0,0,0,0,0.125896817975577,0,0.183546752161682,0,0,0.219686182734472,0.388859798148567,0.139986421625363,0,0.671130424230945,4.35217285206807,2.35265659399725,0,0,0,1.01158230429799,1.05798195854407,1.26766280701236,0,0,0,0,0,0.299600110518405,0,0.933206510776299,1.89008313664367,0.841299845405528,3.14216082844184,2.42955395046775,0.367472397644862,0.383381884072945,0,1.10115880999389,1.27687338085188,0.46081959976873,0.791317726381163,0.823388792421687,1.04182674111352,0.558365998002762,0.56276261003168,1.22238598221448,2.06240009831567,2.27794689278565,0.559198337475902,0.075726193333184,0,0,0,0,0,0,0,0.280888840263504,0,0.259786004602869,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0.517875767294343,0,0,0,0,0.150722640552623,0.23517741427141,0,0,0,0,0,0.220841518460394,0.484875253135222,0,0.292780797011547,0.83778682725382,0.255457055208591,0.718890747035522,0.599902730993408,0.381210681219194,0.748953197024114,1.37250180845588,2.38743269014442,2.60736480288415,2.04572365864264,0.20778804455956,1.29793010454206,0,0.124406970610093,0,0,0,0,0,0.30140963567143,0,0.12811372028485,0,0,0,0.189106080167819,0.175951124163949,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0.146199987425332,0,0.268412837520744,2.3131894342054,4.01327988279209,1.32167513193519,0,0,0,0.128867461322093,0.201683524623343,0,0,0.949058123089023,0.164698954724011,0,0.198956472041151,0,0,0,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0,0,0.335012514883631,0.476087281772027,0.195133647857799,0.157635144106191,0.221464689648775,0.159454768657487,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0.275936746304732,0.80275294993896,0.468846746368813,0,0,0,0,0.215423397732799,0,0.222798674082394,0,0.809621403349789,0.292255857911312,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214337035031592,0.177340233642274,0.356737635204141,0.329098041204242,0.304464949114599,0.23467170806371,0,0,0.16488625294148,0.322928853391811,0.120625849856312,0,0,0,0.18542530201051,0.683483523191411,0.206386867963223,0.555583582109135,0.376736914009382,0.27338845544205,0,1.69978429993855,1.6794174278839,2.9021994498929,0,0,0.203319467126849,0.216010681643603,0.209088296014469,0,0,0,0,0.259229946583586,0,0,0,0.165458490457098,0.972255941720238,0,0.506868376472335,0.234714477291508,0,0.209718688851422,0,0,0.316011120628178,0,0,0,0.179026695667481,0.198681354781265,0.480781798079875,0.295379054349154,0.605798699688886,0.609654453239999,0.604957110821043,0.38983152295901,0.769694733122636,0.935015217452552,0,0,0,0,0,0,0,0,0,5.64751842617067,5.06357760157895,4.01026859407578,2.92150409984269,0.685082519770642,2.2661816921691,3.37511250115903,1.35096360967266,1.81256963593682,2.07104124700728,0.103787347584177,0,0.170733605754134,0.243106717068294,0.209613162627982,0.367687016900028,0.666740183404846,0,0,0.252697211763798,0.25347929989024,0.188626341386076,0.468207537349412,0.512201219238954,0.402048282689293,0.476293691283074,0.579421629724277,0.38581844092741,1.64834360321323,0.441596760403192,0,0.177475806159338,0,0.145346416632329,0.376437521661322,0.25384382367503,0.548783918618318,0.263069711437843,0,0.561142271657738,0.474540072496697,0.394017929502254,0.818462086339379,0,0.192906610981141,0.749431733813838,0.233931608445408,0.214871054048298,0,0,0.231867835620421 | |phase1_expression=0,0.697950815278722,0.454999239389536,0.30246421130683,2.00358291978539,0.33575854382378,0.233612640595526,3.61545305636414,19.7104211012333,14.7460651582856,3.08192342805909,2.23362045186942,2.05440875917447,2.71003247498892,0.333109761815663,0.202475267389826,0,2.20823515750766,0.959801035240171,0.84877930359606,0.425216450755349,0.198581902401771,0,0.47997726838022,0.22940928106717,0,0,0.646413698057667,0.570070258369122,0,0.443461021310609,0,0,0,0,0,0.204169356262369,0.837063261473815,0.7813353445238,0,0,0,0,0.125896817975577,0,0.183546752161682,0,0,0.219686182734472,0.388859798148567,0.139986421625363,0,0.671130424230945,4.35217285206807,2.35265659399725,0,0,0,1.01158230429799,1.05798195854407,1.26766280701236,0,0,0,0,0,0.299600110518405,0,0.933206510776299,1.89008313664367,0.841299845405528,3.14216082844184,2.42955395046775,0.367472397644862,0.383381884072945,0,1.10115880999389,1.27687338085188,0.46081959976873,0.791317726381163,0.823388792421687,1.04182674111352,0.558365998002762,0.56276261003168,1.22238598221448,2.06240009831567,2.27794689278565,0.559198337475902,0.075726193333184,0,0,0,0,0,0,0,0.280888840263504,0,0.259786004602869,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0.517875767294343,0,0,0,0,0.150722640552623,0.23517741427141,0,0,0,0,0,0.220841518460394,0.484875253135222,0,0.292780797011547,0.83778682725382,0.255457055208591,0.718890747035522,0.599902730993408,0.381210681219194,0.748953197024114,1.37250180845588,2.38743269014442,2.60736480288415,2.04572365864264,0.20778804455956,1.29793010454206,0,0.124406970610093,0,0,0,0,0,0.30140963567143,0,0.12811372028485,0,0,0,0.189106080167819,0.175951124163949,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0.146199987425332,0,0.268412837520744,2.3131894342054,4.01327988279209,1.32167513193519,0,0,0,0.128867461322093,0.201683524623343,0,0,0.949058123089023,0.164698954724011,0,0.198956472041151,0,0,0,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0,0,0.335012514883631,0.476087281772027,0.195133647857799,0.157635144106191,0.221464689648775,0.159454768657487,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0.275936746304732,0.80275294993896,0.468846746368813,0,0,0,0,0.215423397732799,0,0.222798674082394,0,0.809621403349789,0.292255857911312,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214337035031592,0.177340233642274,0.356737635204141,0.329098041204242,0.304464949114599,0.23467170806371,0,0,0.16488625294148,0.322928853391811,0.120625849856312,0,0,0,0.18542530201051,0.683483523191411,0.206386867963223,0.555583582109135,0.376736914009382,0.27338845544205,0,1.69978429993855,1.6794174278839,2.9021994498929,0,0,0.203319467126849,0.216010681643603,0.209088296014469,0,0,0,0,0.259229946583586,0,0,0,0.165458490457098,0.972255941720238,0,0.506868376472335,0.234714477291508,0,0.209718688851422,0,0,0.316011120628178,0,0,0,0.179026695667481,0.198681354781265,0.480781798079875,0.295379054349154,0.605798699688886,0.609654453239999,0.604957110821043,0.38983152295901,0.769694733122636,0.935015217452552,0,0,0,0,0,0,0,0,0,5.64751842617067,5.06357760157895,4.01026859407578,2.92150409984269,0.685082519770642,2.2661816921691,3.37511250115903,1.35096360967266,1.81256963593682,2.07104124700728,0.103787347584177,0,0.170733605754134,0.243106717068294,0.209613162627982,0.367687016900028,0.666740183404846,0,0,0.252697211763798,0.25347929989024,0.188626341386076,0.468207537349412,0.512201219238954,0.402048282689293,0.476293691283074,0.579421629724277,0.38581844092741,1.64834360321323,0.441596760403192,0,0.177475806159338,0,0.145346416632329,0.376437521661322,0.25384382367503,0.548783918618318,0.263069711437843,0,0.561142271657738,0.474540072496697,0.394017929502254,0.818462086339379,0,0.192906610981141,0.749431733813838,0.233931608445408,0.214871054048298,0,0,0.231867835620421 | ||
|short_description=p3@Rhof | |||
}} | }} |
Latest revision as of 20:47, 1 October 2015
Short description: | p3@Rhof |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rhof_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 13bp_to_ENSMUST00000031401_5end |
EntrezGene: | Rhof |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gray matter | 3.74e-23 | 34 |
brain grey matter | 1.63e-17 | 29 |
regional part of telencephalon | 1.63e-17 | 29 |
telencephalon | 1.63e-17 | 29 |
regional part of nervous system | 7.04e-17 | 54 |
occipital lobe | 9.72e-17 | 10 |
visual cortex | 9.72e-17 | 10 |
neocortex | 9.72e-17 | 10 |
cerebral cortex | 3.58e-15 | 21 |
cerebral hemisphere | 3.58e-15 | 21 |
pallium | 3.58e-15 | 21 |
neural tube | 1.03e-14 | 52 |
neural rod | 1.03e-14 | 52 |
future spinal cord | 1.03e-14 | 52 |
neural keel | 1.03e-14 | 52 |
central nervous system | 2.26e-14 | 73 |
regional part of cerebral cortex | 7.31e-14 | 17 |
nervous system | 8.16e-14 | 75 |
regional part of forebrain | 1.81e-13 | 39 |
forebrain | 1.81e-13 | 39 |
future forebrain | 1.81e-13 | 39 |
anterior neural tube | 5.06e-13 | 40 |
neurectoderm | 6.17e-11 | 64 |
neural plate | 6.17e-11 | 64 |
presumptive neural plate | 6.17e-11 | 64 |
regional part of brain | 9.44e-11 | 46 |
brain | 1.98e-10 | 47 |
future brain | 1.98e-10 | 47 |
pre-chordal neural plate | 7.89e-10 | 49 |
ectoderm-derived structure | 1.49e-09 | 95 |
ectoderm | 1.49e-09 | 95 |
presumptive ectoderm | 1.49e-09 | 95 |
ecto-epithelium | 6.18e-09 | 73 |
regional part of spinal cord | 2.90e-07 | 5 |
gray matter of spinal cord | 2.90e-07 | 5 |