FFCP PHASE1:Hg19::chr10:71561630..71561641,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:71561630..71561641,+
|short_description=p3@COL13A1
|description=CAGE_peak_3_at_COL13A1_5end
|association_with_transcript=-2bp_to_ENST00000356340,ENST00000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1305 | |EntrezGene=1305 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2190 | |HGNC=2190 | ||
|UniProt=G5E987, | |TSSclassifier=strong | ||
|UniProt=G5E987,E7ES56,E7ES55,E7ES51,E7ES50,E7ES49,E7ES47,E9PEG9,E7ES46,Q5TAT6,B9EGD2,E7EWL8 | |||
|association_with_transcript=-2bp_to_ENST00000356340,ENST00000398964,ENST00000398966,ENST00000398968,ENST00000398969,ENST00000398971,ENST00000398972,ENST00000398973,ENST00000398974,NM_001130103,NM_080798,NM_080800,NM_080801,NM_080802,NM_080805,uc001jpr.1,uc001jps.1,uc001jpt.1,uc001jp | |||
|cluster_id=chr10:71561630..71561641,+ | |||
|coexpression_cluster_id=C3039 | |||
|description=CAGE_peak_3_at_COL13A1_5end | |||
|id=chr10:71561630..71561641,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.97e-15!180;CL:0000057!8.32e-11!75;CL:0000183!9.65e-10!59;CL:0000359!1.26e-09!32;CL:0000192!5.70e-09!42;CL:0000514!5.70e-09!42;CL:0000187!4.79e-08!54;CL:0000222!6.46e-08!119;CL:0000680!1.44e-07!57;CL:0000056!1.44e-07!57;CL:0000355!1.44e-07!57;CL:0002139!2.00e-07!24;CL:0000393!3.23e-07!60;CL:0000211!3.23e-07!60;CL:0000071!6.64e-07!18;CL:0002546!6.64e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000097;2.06e-15;5!CL:0002603;7.88e-10;3!CL:0000359;6.63e-09;32!CL:0000163;2.24e-08;9!CL:0002575;1.09e-07;2!CL:1000413;1.10e-07;9!CL:0002544;1.47e-07;6!CL:0002549;1.72e-07;2!CL:0002539;3.06e-07;10!CL:0000071;7.39e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.51e-15,5;CL:0002028,1.51e-15,5;CL:0002603,1.17e-09,3;CL:0000359,7.47e-09,32;CL:0000163,1.90e-08,9;CL:1000413,8.32e-08,9;CL:0002544,1.03e-07,6;CL:0002575,1.14e-07,2;CL:0000222,1.51e-07,121;CL:0002549,1.60e-07,2;CL:0002539,2.23e-07,10;CL:0000115,2.93e-07,36;CL:0000192,3.45e-07,43;CL:0000514,3.45e-07,43;CL:0000071,5.39e-07,18;CL:0002546,5.39e-07,18;CL:0002367,9.44e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;6.79e-10;3!CL:0002546;7.39e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!5.42e-25!79;UBERON:0007798!5.42e-25!79;UBERON:0001009!4.74e-20!113;UBERON:0004535!7.95e-20!110;UBERON:0000055!2.71e-17!69;UBERON:0004872!4.63e-16!84;UBERON:0001981!6.80e-16!60;UBERON:0007500!6.80e-16!60;UBERON:0004537!6.80e-16!60;UBERON:0006965!6.80e-16!60;UBERON:0004573!2.98e-15!33;UBERON:0004571!2.98e-15!33;UBERON:0001637!5.95e-15!42;UBERON:0003509!5.95e-15!42;UBERON:0004572!5.95e-15!42;UBERON:0000477!4.01e-12!286;UBERON:0000947!3.16e-11!21;UBERON:0010191!3.16e-11!21;UBERON:0003914!6.06e-11!118;UBERON:0000119!8.99e-11!312;UBERON:0000483!1.05e-09!309;UBERON:0002200!1.61e-09!11;UBERON:0006876!1.61e-09!11;UBERON:0004111!2.49e-09!241;UBERON:0000468!3.40e-09!659;UBERON:0000490!8.44e-09!138;UBERON:0000025!3.39e-08!194;UBERON:0000467!1.41e-07!625;UBERON:0001134!1.58e-07!61;UBERON:0002036!1.58e-07!61;UBERON:0003082!1.58e-07!61;UBERON:0002385!1.72e-07!63;UBERON:0001015!1.72e-07!63;UBERON:0000383!1.72e-07!63;UBERON:0000480!1.79e-07!626;UBERON:0000914!5.22e-07!83;UBERON:0002329!5.22e-07!83;UBERON:0003077!5.22e-07!83;UBERON:0003059!5.22e-07!83;UBERON:0007282!5.22e-07!83;UBERON:0009618!5.22e-07!83;UBERON:0007285!5.22e-07!83;UBERON:0004290!5.41e-07!70;UBERON:0001986!6.64e-07!18;UBERON:0004638!6.64e-07!18;UBERON:0004852!6.64e-07!18;UBERON:0000487!6.82e-07!22;UBERON:0002037!7.91e-07!6;UBERON:0006215!7.91e-07!6;UBERON:0007100!9.00e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;5.18e-18;6!UBERON:0000947;6.67e-17;21!UBERON:0010191;6.67e-17;21!UBERON:0004573;2.75e-14;33!UBERON:0004571;2.75e-14;33!UBERON:0001637;1.92e-13;42!UBERON:0003509;1.92e-13;42!UBERON:0004572;1.92e-13;42!UBERON:0002680;9.50e-12;9!UBERON:0001895;9.50e-12;9!UBERON:0005284;1.83e-10;5!UBERON:0006876;2.15e-09;11!UBERON:0007500;9.38e-09;56!UBERON:0001981;9.38e-09;56!UBERON:0004537;9.38e-09;56!UBERON:0004733;1.29e-08;12!UBERON:0002028;1.29e-08;12!UBERON:0004732;6.82e-08;13!UBERON:0003915;1.10e-07;9!UBERON:0004700;1.10e-07;9!UBERON:0001917;1.10e-07;9!UBERON:0005629;1.72e-07;2!UBERON:0005358;1.72e-07;2!UBERON:0001886;1.72e-07;2!UBERON:0004086;1.72e-07;2!UBERON:0005282;1.72e-07;2!UBERON:0005281;1.72e-07;2!UBERON:0002049;2.23e-07;75!UBERON:0007798;2.23e-07;75!UBERON:0004237;3.06e-07;10!UBERON:0004695;3.06e-07;10!UBERON:0002111;3.06e-07;10!UBERON:0004178;3.06e-07;10!UBERON:0000487;3.57e-07;22!UBERON:0004638;7.39e-07;18!UBERON:0001986;7.39e-07;18!UBERON:0004852;7.39e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,5.15e-20,78;UBERON:0007798,5.15e-20,78;UBERON:0002037,5.45e-18,6;UBERON:0006215,5.45e-18,6;UBERON:0000947,4.03e-17,21;UBERON:0010191,4.03e-17,21;UBERON:0004573,9.29e-16,33;UBERON:0004571,9.29e-16,33;UBERON:0001637,1.78e-15,42;UBERON:0003509,1.78e-15,42;UBERON:0004572,1.78e-15,42;UBERON:0007500,2.62e-14,59;UBERON:0001981,2.62e-14,59;UBERON:0004537,2.62e-14,59;UBERON:0006965,2.62e-14,59;UBERON:0000055,3.76e-13,68;UBERON:0004535,2.51e-12,109;UBERON:0001009,8.16e-12,112;UBERON:0002680,9.81e-12,9;UBERON:0001895,9.81e-12,9;UBERON:0010092,9.81e-12,9;UBERON:0005284,1.87e-10,5;UBERON:0006876,1.57e-09,11;UBERON:0003076,4.39e-09,15;UBERON:0003057,4.39e-09,15;UBERON:0004872,9.26e-09,83;UBERON:0004733,1.32e-08,12;UBERON:0002028,1.32e-08,12;UBERON:0007277,1.32e-08,12;UBERON:0004732,6.97e-08,13;UBERON:0003915,8.32e-08,9;UBERON:0004700,8.32e-08,9;UBERON:0001917,8.32e-08,9;UBERON:0005629,1.60e-07,2;UBERON:0005358,1.60e-07,2;UBERON:0001886,1.60e-07,2;UBERON:0004086,1.60e-07,2;UBERON:0005282,1.60e-07,2;UBERON:0005281,1.60e-07,2;UBERON:0004237,2.23e-07,10;UBERON:0004695,2.23e-07,10;UBERON:0002111,2.23e-07,10;UBERON:0004178,2.23e-07,10;UBERON:0000487,2.69e-07,22;UBERON:0000025,3.64e-07,192;UBERON:0003914,4.39e-07,117;UBERON:0004638,5.39e-07,18;UBERON:0001986,5.39e-07,18;UBERON:0004852,5.39e-07,18;UBERON:0005969,9.44e-07,2;UBERON:0003956,9.44e-07,2 | |||
|phase1_expression=0,0,0.422863212287913,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0.602694528023977,2.19093027116212,0.487932798790507,2.09305798730539,3.67201244239655,1.25381888591235,0,0.410623275218653,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0.795285947051099,0,0.567208902984407,0.665188192387692,0.614843499851882,0.327447688744282,0,0,0,0,0,0,0,0,1.19257444420023,1.72046919021225,1.38856200643038,1.69592382577203,2.51699661725944,0,0.417989933073621,0.516833518338658,0.35576626268671,0,0.402829317109147,0,0.24406205754817,0.367663080345869,0.81014194788176,1.87529429396568,2.2452937262617,0.675668882899933,0,0,0.732806975721629,0,0,0,0,0.633152558322899,1.05927344650575,1.14734648299525,0.709336764396714,0.560677600142307,0,0.24666754841716,0.933633106199299,0.269421344139376,0.653847612453835,2.57307626996383,6.91411109375999,0,0,0.570471821544449,0.448346041655403,0,0,0,0.204154171254893,0.368502951935304,0.516628905878827,0,0.247266929278557,0.910161361938026,1.43723628363248,0.505008341862199,0.375355559615893,0.554128230968366,0.438977620880838,0.30648779579902,0.45071417671979,0.453728732640084,0.538168907066586,0,0,0.600182192168805,0,0.515281080091258,0.37223371266318,1.68776332241266,0.389748020644795,0.504867548488229,0.184099797284599,0,1.06502877754984,0.201504196455281,0,0,0,0.286804595389004,0.853815942907168,0.397589304964456,0.348581828608555,0.207322110030741,0,0,1.56449532329816,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0.100528972411631,0.0925884451585296,0,0,2.88662684050547,0.811512834825538,0.587043471179108,0.577465791044295,0.462985512576611,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,1.47798971368783,2.3773077183571,3.7319060797339,2.45003920808834,2.90357596880674,0.063497894292169,0,0,0,0,0,0,2.5790149399433,0.87192013766656,3.2268845761218,0.775630294546667,0,0,0.797814349754612,1.04007436911366,0.514414748524284,0,1.3321108950805,0.285955987316295,0.542621605391443,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,1.42636905040718,0.144781306667579,0,0,0,0.197030760201927,0.215627574859517,0,0,0,0,0,0,0,0,0.414415513436035,0.12269149171914,0,0,0,0.356857977594324,0.473107245101804,0.234282829985426,0,0,0,0,0,0.260650843404249,6.06983588134496,5.14715135716284,0,0,0,0,0,0,0.248107807818777,0.61384789315225,0.280660094433074,0.128139149255701,0,0.482561763430822,0,0,0.355123450626254,0.246381468041427,0.519254429183621,0.232420756919918,0,0,0,0.459257792658427,0.182091168006717,0.262248829918848,0,0.0770153371044148,0,0,0,1.13733384070897,1.02056223165909,0.215915916102139,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0.366277859273374,0.330037999682352,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0.170453254832202,0.0890320356467374,0,0.192190067365106,0,0,0,2.83331112147576,1.3940745403212,1.84820148105653,2.66153015158511,0,0.74129687641568,0.286249773483982,2.60510858551767,2.21465597303108,0.571890581771475,0,0,1.27281299170375,0.78494864019923,0.179872457583315,0,0,0.808729926293264,1.58510321173008,0.421258456238981,0.48763373908959,0.731140468893853,0,0.545999645631943,0.141405431953713,2.26016233240486,1.10273068709225,0,0.438450885253763,0,1.31178950409327,0.202910376962704,0,0,0.143411352204052,0.196498082026242,0,0,0,0,1.89736586882858,1.39973888097993,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40963376167696,0,0,0,0,0,0.111308705022906,0,0,1.9924798825107,0.276283915531148,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0.0927680981618513,0,0,0,0,0,0,0,0,0.291604613383254,0,0.885741385813839,0,1.52581736317083,6.52417633594225,2.65992857058193,0.219385397153973,0,0,0.461701551022782,0.227884111694002,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0.995261931078505,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,1.20990716048664,0,0.442306057399416,0,0.103688191397247,0.664653872707185,0.330991955875499,1.56966459203613,1.19472429772959,0,1.66409607615766,0,0,0,0.873633341210151,0.51595809741485,0,0,0,0.0969890164884194,0,0,1.09633539717401,0.19871461170299,0,0,0.0801588202515337,0,0,0,0,0,0,0.248505071130865,0,0.407712618220842,0.104602846312333,0,0,0,0,0,0,0,0.558564802544508,1.3749625440701,0,0.199679000498991,0.429226048136571,0,0.403100834920358,0.360299883542404,0,0,0,0,0,0,0,0,0.321506296930038,0.137539436597234,0,0,0,0.0607495566580247,0.335434687599266,0,0.577000469484979,0.316801009558219,0,0,0,0,0,0.542999601753713,3.45688596480507,0.653174720218818,0,0,0.170388021785422,0.113312091520126,0,0,0,0.13223260174269,0,0,0.640724475406168,0.943225830597996,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0.235265819698172,0,0,0.298509605773748,0,0.554805861502613,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| ||
|short_description=p3@COL13A1 | |||
}} | }} |
Latest revision as of 01:15, 19 September 2015
Short description: | p3@COL13A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL13A1_5end |
Coexpression cluster: | C3039_Pericytes_Smooth_alveolar_Fibroblast_fibrosarcoma_Lens_Meningeal |
Association with transcript: | -2bp_to_ENST00000356340, ENST00000398964, ENST00000398966, ENST00000398968, ENST00000398969, ENST00000398971, ENST00000398972, ENST00000398973, ENST00000398974, NM_001130103, NM_080798, NM_080800, NM_080801, NM_080802, NM_080805, uc001jpr.1, uc001jps.1, uc001jpt.1, uc001jp |
EntrezGene: | COL13A1 |
HGNC: | 2190 |
UniProt: | G5E987E7ES56E7ES55E7ES51E7ES50E7ES49E7ES47E9PEG9E7ES46Q5TAT6B9EGD2E7EWL8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.51e-15 | 5 |
basophil mast progenitor cell | 1.51e-15 | 5 |
astrocyte of the cerebellum | 1.17e-09 | 3 |
vascular associated smooth muscle cell | 7.47e-09 | 32 |
endocrine cell | 1.90e-08 | 9 |
endothelial cell of artery | 8.32e-08 | 9 |
aortic endothelial cell | 1.03e-07 | 6 |
central nervous system pericyte | 1.14e-07 | 2 |
mesodermal cell | 1.51e-07 | 121 |
fibroblast of choroid plexus | 1.60e-07 | 2 |
aortic smooth muscle cell | 2.23e-07 | 10 |
endothelial cell | 2.93e-07 | 36 |
smooth muscle cell | 3.45e-07 | 43 |
smooth muscle myoblast | 3.45e-07 | 43 |
blood vessel endothelial cell | 5.39e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.39e-07 | 18 |
trabecular meshwork cell | 9.44e-07 | 2 |