FFCP PHASE1:Hg19::chr11:11863579..11863618,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:11863579..11863618,+
|short_description=p2@USP47
|description=CAGE_peak_2_at_USP47_5end
|association_with_transcript=0bp_to_ENST00000399455,ENST0000053558...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55031 | |EntrezGene=55031 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20076 | |HGNC=20076 | ||
|UniProt=Q96K76, | |TSSclassifier=strong | ||
|UniProt=Q96K76,F5H2J6 | |||
|association_with_transcript=0bp_to_ENST00000399455,ENST00000535588_5end | |||
|cluster_id=chr11:11863579..11863618,+ | |||
|description=CAGE_peak_2_at_USP47_5end | |||
|id=chr11:11863579..11863618,+ | |||
|ontology_enrichment_celltype=CL:0000037!5.85e-19!172;CL:0000566!5.85e-19!172;CL:0000738!3.12e-18!140;CL:0000988!3.60e-17!182;CL:0002032!1.01e-16!165;CL:0000837!1.01e-16!165;CL:0002087!3.93e-14!119;CL:0002031!8.69e-14!124;CL:0000791!5.18e-11!18;CL:0000789!5.18e-11!18;CL:0002420!5.18e-11!18;CL:0002419!5.18e-11!18;CL:0000790!5.18e-11!18;CL:0000084!2.52e-10!25;CL:0000827!2.52e-10!25;CL:0000838!3.92e-09!52;CL:0000542!3.94e-09!53;CL:0000051!3.94e-09!53;CL:0000763!1.74e-08!112;CL:0000049!1.74e-08!112;CL:0000625!1.06e-07!11;CL:0002057!1.82e-07!42;CL:0000860!3.37e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.72e-11;18!CL:0000789;3.72e-11;18!CL:0002419;3.72e-11;18!CL:0000084;1.00e-10;25!CL:0000625;9.02e-08;11!CL:0000860;1.26e-07;33!CL:0002057;1.26e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.30e-19,168;CL:0000738,1.49e-18,136;CL:0000988,9.48e-18,177;CL:0002032,6.03e-17,161;CL:0000837,6.03e-17,161;CL:0002087,2.02e-14,115;CL:0002031,4.74e-14,120;CL:0000791,4.88e-11,18;CL:0000789,4.88e-11,18;CL:0002420,4.88e-11,18;CL:0002419,4.88e-11,18;CL:0000790,4.88e-11,18;CL:0000084,2.39e-10,25;CL:0000827,2.39e-10,25;CL:0000838,3.74e-09,52;CL:0000542,3.75e-09,53;CL:0000051,3.75e-09,53;CL:0000763,1.23e-08,108;CL:0000049,1.23e-08,108;CL:0000625,1.02e-07,11;CL:0000860,1.75e-07,42;CL:0002057,1.75e-07,42;CL:0000766,6.77e-07,72;CL:0000557,8.00e-07,67 | |||
|ontology_enrichment_development_v019=CL:0000790;3.72e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.60e-18!115;UBERON:0001049!2.00e-14!57;UBERON:0005068!2.00e-14!57;UBERON:0006241!2.00e-14!57;UBERON:0007135!2.00e-14!57;UBERON:0002780!3.50e-13!41;UBERON:0001890!3.50e-13!41;UBERON:0006240!3.50e-13!41;UBERON:0003080!3.94e-13!42;UBERON:0001017!4.98e-12!82;UBERON:0002616!6.78e-12!59;UBERON:0000955!1.21e-11!69;UBERON:0006238!1.21e-11!69;UBERON:0000073!2.16e-11!94;UBERON:0001016!2.16e-11!94;UBERON:0005743!7.64e-11!86;UBERON:0002020!3.26e-10!34;UBERON:0003528!3.26e-10!34;UBERON:0001893!8.07e-10!34;UBERON:0002791!1.11e-09!33;UBERON:0001869!3.27e-09!32;UBERON:0002390!9.71e-08!102;UBERON:0003061!9.71e-08!102;UBERON:0002619!3.52e-07!22;UBERON:0002346!3.78e-07!90;UBERON:0003075!6.37e-07!86;UBERON:0007284!6.37e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.92e-10;41!UBERON:0001890;5.92e-10;41!UBERON:0003528;1.37e-08;34!UBERON:0002020;1.37e-08;34!UBERON:0002791;1.82e-08;32!UBERON:0001869;2.67e-08;32!UBERON:0001893;3.75e-08;34!UBERON:0000073;4.71e-08;53!UBERON:0002616;4.71e-08;53!UBERON:0002619;3.33e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.57e-17,114;UBERON:0001049,2.23e-14,56;UBERON:0005068,2.23e-14,56;UBERON:0006241,2.23e-14,56;UBERON:0007135,2.23e-14,56;UBERON:0002780,3.25e-13,41;UBERON:0001890,3.25e-13,41;UBERON:0003080,3.25e-13,41;UBERON:0006240,3.25e-13,41;UBERON:0000073,4.45e-13,53;UBERON:0002616,4.45e-13,53;UBERON:0001016,2.46e-12,89;UBERON:0001017,8.02e-12,81;UBERON:0000955,1.76e-11,68;UBERON:0006238,1.76e-11,68;UBERON:0003528,3.08e-10,34;UBERON:0002020,3.08e-10,34;UBERON:0001893,7.66e-10,34;UBERON:0002791,1.95e-09,32;UBERON:0001869,3.11e-09,32;UBERON:0002346,1.72e-08,86;UBERON:0003075,2.86e-08,82;UBERON:0007284,2.86e-08,82;UBERON:0002390,5.92e-08,98;UBERON:0003061,5.92e-08,98;UBERON:0002619,3.40e-07,22 | |||
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| ||
|short_description=p2@USP47 | |||
}} | }} |
Latest revision as of 01:09, 16 September 2015
Short description: | p2@USP47 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_USP47_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000399455, ENST00000535588_5end |
EntrezGene: | USP47 |
HGNC: | 20076 |
UniProt: | Q96K76F5H2J6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.30e-19 | 168 |
leukocyte | 1.49e-18 | 136 |
hematopoietic cell | 9.48e-18 | 177 |
hematopoietic oligopotent progenitor cell | 6.03e-17 | 161 |
hematopoietic multipotent progenitor cell | 6.03e-17 | 161 |
nongranular leukocyte | 2.02e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 4.74e-14 | 120 |
mature alpha-beta T cell | 4.88e-11 | 18 |
alpha-beta T cell | 4.88e-11 | 18 |
immature T cell | 4.88e-11 | 18 |
mature T cell | 4.88e-11 | 18 |
immature alpha-beta T cell | 4.88e-11 | 18 |
T cell | 2.39e-10 | 25 |
pro-T cell | 2.39e-10 | 25 |
lymphoid lineage restricted progenitor cell | 3.74e-09 | 52 |
lymphocyte | 3.75e-09 | 53 |
common lymphoid progenitor | 3.75e-09 | 53 |
myeloid cell | 1.23e-08 | 108 |
common myeloid progenitor | 1.23e-08 | 108 |
CD8-positive, alpha-beta T cell | 1.02e-07 | 11 |
classical monocyte | 1.75e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.75e-07 | 42 |
myeloid leukocyte | 6.77e-07 | 72 |
granulocyte monocyte progenitor cell | 8.00e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.57e-17 | 114 |
neural tube | 2.23e-14 | 56 |
neural rod | 2.23e-14 | 56 |
future spinal cord | 2.23e-14 | 56 |
neural keel | 2.23e-14 | 56 |
regional part of forebrain | 3.25e-13 | 41 |
forebrain | 3.25e-13 | 41 |
anterior neural tube | 3.25e-13 | 41 |
future forebrain | 3.25e-13 | 41 |
regional part of nervous system | 4.45e-13 | 53 |
regional part of brain | 4.45e-13 | 53 |
nervous system | 2.46e-12 | 89 |
central nervous system | 8.02e-12 | 81 |
brain | 1.76e-11 | 68 |
future brain | 1.76e-11 | 68 |
brain grey matter | 3.08e-10 | 34 |
gray matter | 3.08e-10 | 34 |
telencephalon | 7.66e-10 | 34 |
regional part of telencephalon | 1.95e-09 | 32 |
cerebral hemisphere | 3.11e-09 | 32 |
neurectoderm | 1.72e-08 | 86 |
neural plate | 2.86e-08 | 82 |
presumptive neural plate | 2.86e-08 | 82 |
hematopoietic system | 5.92e-08 | 98 |
blood island | 5.92e-08 | 98 |
regional part of cerebral cortex | 3.40e-07 | 22 |