FFCP PHASE1:Hg19::chr2:11752415..11752445,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9687 | |EntrezGene=9687 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24885 | |HGNC=24885 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-23bp_to_ENST00000472040_5end | |association_with_transcript=-23bp_to_ENST00000472040_5end | ||
|cluster_id=chr2:11752415..11752445,+ | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_2_at_GREB1_5end | |description=CAGE_peak_2_at_GREB1_5end | ||
|id=chr2:11752415..11752445,+ | |id=chr2:11752415..11752445,+ | ||
|ontology_enrichment_celltype=CL:0000148!6.98e-10!10;CL:0000541!6.98e-10!10;CL:0000147!3.47e-08!14 | |ontology_enrichment_celltype=CL:0000148!6.98e-10!10;CL:0000541!6.98e-10!10;CL:0000147!3.47e-08!14 | ||
|ontology_enrichment_celltype_v019=CL:0000148;3.18e-19;10!CL:0000147;4.42e-17;14!CL:0002567;5.82e-13;3!CL:0000710;4.76e-09;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.24e-19,10;CL:0000541,3.24e-19,10;CL:0000147,4.68e-17,14;CL:0002567,5.96e-13,3;CL:0000710,4.80e-09,20 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.15e-16;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;3.05e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.06e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.62e-33!57;UBERON:0005068!2.62e-33!57;UBERON:0006241!2.62e-33!57;UBERON:0007135!2.62e-33!57;UBERON:0002616!2.44e-29!59;UBERON:0007023!8.14e-29!115;UBERON:0005743!1.98e-28!86;UBERON:0000955!2.18e-28!69;UBERON:0006238!2.18e-28!69;UBERON:0001017!2.10e-27!82;UBERON:0003075!2.21e-27!86;UBERON:0007284!2.21e-27!86;UBERON:0001893!4.83e-27!34;UBERON:0002780!5.44e-27!41;UBERON:0001890!5.44e-27!41;UBERON:0006240!5.44e-27!41;UBERON:0002020!5.57e-27!34;UBERON:0003528!5.57e-27!34;UBERON:0000073!1.81e-26!94;UBERON:0001016!1.81e-26!94;UBERON:0003080!4.15e-26!42;UBERON:0002791!1.05e-25!33;UBERON:0002346!1.84e-25!90;UBERON:0001869!1.58e-24!32;UBERON:0000033!1.69e-21!123;UBERON:0004121!2.06e-20!169;UBERON:0003056!4.88e-20!61;UBERON:0000153!1.03e-19!129;UBERON:0007811!1.03e-19!129;UBERON:0000924!1.74e-19!173;UBERON:0006601!1.74e-19!173;UBERON:0002619!1.02e-18!22;UBERON:0001950!4.36e-16!20;UBERON:0000956!7.46e-16!25;UBERON:0000203!7.46e-16!25;UBERON:0002420!9.37e-14!9;UBERON:0007245!9.37e-14!9;UBERON:0010009!9.37e-14!9;UBERON:0010011!9.37e-14!9;UBERON:0000454!9.37e-14!9;UBERON:0002308!1.06e-13!9;UBERON:0000125!1.06e-13!9;UBERON:0009663!4.20e-11!7;UBERON:0000200!1.07e-09!6;UBERON:0002298!3.07e-09!8;UBERON:0000349!1.79e-08!5;UBERON:0003076!2.53e-08!15;UBERON:0003057!2.53e-08!15;UBERON:0000025!3.95e-07!194;UBERON:0000483!4.03e-07!309;UBERON:0001871!5.60e-07!7;UBERON:0000119!6.92e-07!312;UBERON:0000369!8.10e-07!4;UBERON:0002435!8.10e-07!4;UBERON:0000204!8.10e-07!4;UBERON:0010082!8.10e-07!4;UBERON:0004733!9.82e-07!12;UBERON:0002028!9.82e-07!12;UBERON:0007277!9.82e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;8.07e-47;34!UBERON:0002020;8.07e-47;34!UBERON:0001893;9.19e-46;34!UBERON:0001869;2.81e-42;32!UBERON:0002791;3.07e-42;32!UBERON:0002780;1.43e-39;41!UBERON:0001890;1.43e-39;41!UBERON:0000073;7.93e-39;53!UBERON:0002616;7.93e-39;53!UBERON:0002619;3.35e-37;22!UBERON:0000956;1.88e-32;25!UBERON:0000203;1.88e-32;25!UBERON:0001950;6.05e-31;20!UBERON:0000125;2.16e-25;9!UBERON:0002308;2.16e-25;9!UBERON:0001017;2.79e-22;75!UBERON:0000200;2.09e-21;6!UBERON:0000955;4.50e-21;68!UBERON:0002298;8.89e-21;6!UBERON:0002420;6.29e-20;9!UBERON:0007245;6.29e-20;9!UBERON:0010009;6.29e-20;9!UBERON:0010011;6.29e-20;9!UBERON:0000454;6.29e-20;9!UBERON:0009663;5.20e-19;7!UBERON:0001016;3.94e-17;83!UBERON:0000349;1.17e-12;5!UBERON:0001872;3.81e-12;5!UBERON:0000988;2.96e-11;3!UBERON:0001896;2.96e-11;3!UBERON:0005290;2.96e-11;3!UBERON:0001870;6.05e-11;3!UBERON:0007023;1.49e-10;114!UBERON:0004733;4.30e-10;12!UBERON:0002028;4.30e-10;12!UBERON:0004732;2.86e-09;13!UBERON:0000369;5.01e-09;4!UBERON:0002435;5.01e-09;4!UBERON:0000204;5.01e-09;4!UBERON:0001871;6.85e-09;6!UBERON:0001954;8.90e-09;2!UBERON:0003022;8.90e-09;2!UBERON:0002421;8.90e-09;2!UBERON:0002600;8.90e-09;2!UBERON:0001875;9.79e-09;2!UBERON:0006514;9.79e-09;2!UBERON:0001897;1.08e-08;2!UBERON:0010225;1.08e-08;2!UBERON:0002771;1.73e-08;2!UBERON:0002148;3.63e-08;2!UBERON:0006331;3.63e-08;2!UBERON:0009662;3.63e-08;2!UBERON:0002702;7.50e-08;2!UBERON:0011216;1.98e-07;132 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,9.37e-71,56;UBERON:0005068,9.37e-71,56;UBERON:0006241,9.37e-71,56;UBERON:0007135,9.37e-71,56;UBERON:0000073,5.00e-66,53;UBERON:0002616,5.00e-66,53;UBERON:0002780,1.81e-57,41;UBERON:0001890,1.81e-57,41;UBERON:0003080,1.81e-57,41;UBERON:0006240,1.81e-57,41;UBERON:0001893,8.27e-55,34;UBERON:0003528,1.15e-54,34;UBERON:0002020,1.15e-54,34;UBERON:0000955,1.80e-52,68;UBERON:0006238,1.80e-52,68;UBERON:0001017,4.88e-52,81;UBERON:0003075,7.59e-52,82;UBERON:0007284,7.59e-52,82;UBERON:0002346,4.74e-49,86;UBERON:0001869,7.85e-49,32;UBERON:0002791,9.54e-49,32;UBERON:0001016,4.53e-46,89;UBERON:0010371,1.89e-44,104;UBERON:0003056,8.51e-43,61;UBERON:0007023,6.22e-38,114;UBERON:0002619,3.56e-37,22;UBERON:0000956,1.98e-32,25;UBERON:0000203,1.98e-32,25;UBERON:0010314,5.34e-31,132;UBERON:0001950,5.89e-31,20;UBERON:0004121,7.34e-28,171;UBERON:0000924,7.34e-28,171;UBERON:0006601,7.34e-28,171;UBERON:0000125,3.44e-25,9;UBERON:0002308,3.44e-25,9;UBERON:0000200,1.63e-21,6;UBERON:0002298,7.75e-21,6;UBERON:0002420,8.92e-20,9;UBERON:0007245,8.92e-20,9;UBERON:0010009,8.92e-20,9;UBERON:0010011,8.92e-20,9;UBERON:0000454,8.92e-20,9;UBERON:0009663,7.40e-19,7;UBERON:0000025,6.48e-15,192;UBERON:0011216,1.64e-14,223;UBERON:0003076,3.19e-14,15;UBERON:0003057,3.19e-14,15;UBERON:0000349,1.70e-12,5;UBERON:0001872,3.76e-12,5;UBERON:0001896,1.78e-11,3;UBERON:0005290,1.78e-11,3;UBERON:0010096,1.78e-11,3;UBERON:0004111,3.64e-11,240;UBERON:0000988,4.25e-11,3;UBERON:0001870,5.46e-11,3;UBERON:0004733,4.03e-10,12;UBERON:0002028,4.03e-10,12;UBERON:0007277,4.03e-10,12;UBERON:0004732,2.70e-09,13;UBERON:0000483,3.21e-09,306;UBERON:0000119,4.79e-09,309;UBERON:0001871,6.19e-09,6;UBERON:0001875,6.94e-09,2;UBERON:0006514,6.94e-09,2;UBERON:0001897,7.22e-09,2;UBERON:0010225,7.22e-09,2;UBERON:0000369,8.44e-09,4;UBERON:0002435,8.44e-09,4;UBERON:0000204,8.44e-09,4;UBERON:0010082,8.44e-09,4;UBERON:0001954,1.02e-08,2;UBERON:0003022,1.02e-08,2;UBERON:0002421,1.02e-08,2;UBERON:0002600,1.02e-08,2;UBERON:0002771,1.49e-08,2;UBERON:0002148,4.06e-08,2;UBERON:0006331,4.06e-08,2;UBERON:0009662,4.06e-08,2;UBERON:0002702,6.99e-08,2 | |||
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| ||
|short_description=p2@GREB1 | |short_description=p2@GREB1 | ||
}} | }} |
Latest revision as of 15:22, 16 September 2015
Short description: | p2@GREB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GREB1_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -23bp_to_ENST00000472040_5end |
EntrezGene: | GREB1 |
HGNC: | 24885 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.24e-19 | 10 |
melanoblast | 3.24e-19 | 10 |
pigment cell | 4.68e-17 | 14 |
light melanocyte | 5.96e-13 | 3 |
neurecto-epithelial cell | 4.80e-09 | 20 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.06e-09 | 2 |