FFCP PHASE1:Hg19::chr3:119362088..119362099,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:119362088..119362099,- | |||
|description=CAGE_peak_at_chr3:119362088..119362099,- | |description=CAGE_peak_at_chr3:119362088..119362099,- | ||
|id=chr3:119362088..119362099,- | |id=chr3:119362088..119362099,- | ||
|ontology_enrichment_celltype=CL:0000839!2.44e-12!70;CL:0000557!4.60e-12!71;CL:0002057!3.37e-11!42;CL:0002274!3.75e-11!5;CL:0000457!3.75e-11!5;CL:0002191!3.75e-11!5;CL:0000097!3.75e-11!5;CL:0000831!3.75e-11!5;CL:0002028!3.75e-11!5;CL:0000766!8.33e-11!76;CL:0000860!4.04e-10!45;CL:0002194!2.39e-08!63;CL:0000576!2.39e-08!63;CL:0000040!2.39e-08!63;CL:0000559!2.39e-08!63;CL:0002009!6.24e-08!65 | |ontology_enrichment_celltype=CL:0000839!2.44e-12!70;CL:0000557!4.60e-12!71;CL:0002057!3.37e-11!42;CL:0002274!3.75e-11!5;CL:0000457!3.75e-11!5;CL:0002191!3.75e-11!5;CL:0000097!3.75e-11!5;CL:0000831!3.75e-11!5;CL:0002028!3.75e-11!5;CL:0000766!8.33e-11!76;CL:0000860!4.04e-10!45;CL:0002194!2.39e-08!63;CL:0000576!2.39e-08!63;CL:0000040!2.39e-08!63;CL:0000559!2.39e-08!63;CL:0002009!6.24e-08!65 | ||
|ontology_enrichment_celltype_v019=CL:0000097;4.15e-20;5!CL:0000473;3.43e-13;39!CL:0000234;3.43e-13;39!CL:0000860;5.48e-13;33!CL:0002057;5.48e-13;33!CL:0002591;9.60e-12;1!CL:0002601;9.60e-12;1!CL:0000163;1.96e-11;9!CL:0000766;1.02e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,4.16e-20,5;CL:0002028,4.16e-20,5;CL:0000839,1.53e-17,66;CL:0000557,2.91e-17,67;CL:0000766,5.66e-16,72;CL:0000473,4.18e-13,48;CL:0000234,4.18e-13,48;CL:0002601,5.62e-12,1;CL:0000860,1.18e-11,42;CL:0002057,1.18e-11,42;CL:0002591,1.47e-11,1;CL:0000163,1.96e-11,9;CL:0002194,2.67e-10,59;CL:0000576,2.67e-10,59;CL:0000040,2.67e-10,59;CL:0000559,2.67e-10,59;CL:0000763,3.58e-10,108;CL:0000049,3.58e-10,108;CL:0002009,6.14e-10,61;CL:0002031,5.30e-09,120;CL:0000738,9.24e-08,136 | |||
|ontology_enrichment_development_v019=UBERON:0010227;3.64e-12;1!CL:0002057;6.24e-09;42 | |||
|ontology_enrichment_disease=DOID:0060084!2.30e-07!3;DOID:127!2.30e-07!3 | |ontology_enrichment_disease=DOID:0060084!2.30e-07!3;DOID:127!2.30e-07!3 | ||
|ontology_enrichment_disease_v019=DOID:0060084;8.07e-15;3!DOID:127;8.07e-15;3!DOID:0060072;2.36e-11;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,9.30e-15,3;DOID:127,9.30e-15,3;DOID:0060072,2.63e-11,4 | |||
|ontology_enrichment_uberon=UBERON:0002371!7.51e-11!80;UBERON:0001474!1.35e-09!86;UBERON:0002390!3.61e-09!102;UBERON:0003061!3.61e-09!102;UBERON:0002193!1.84e-08!112;UBERON:0003081!1.21e-07!216;UBERON:0004765!3.68e-07!101;UBERON:0001434!3.68e-07!101;UBERON:0002405!9.65e-07!115;UBERON:0002204!9.71e-07!167 | |ontology_enrichment_uberon=UBERON:0002371!7.51e-11!80;UBERON:0001474!1.35e-09!86;UBERON:0002390!3.61e-09!102;UBERON:0003061!3.61e-09!102;UBERON:0002193!1.84e-08!112;UBERON:0003081!1.21e-07!216;UBERON:0004765!3.68e-07!101;UBERON:0001434!3.68e-07!101;UBERON:0002405!9.65e-07!115;UBERON:0002204!9.71e-07!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0002079;3.64e-12;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.61e-15,76;UBERON:0001474,7.36e-14,82;UBERON:0004765,1.68e-12,90;UBERON:0002079,4.06e-12,1;UBERON:0002405,4.73e-12,93;UBERON:0002390,2.31e-11,98;UBERON:0003061,2.31e-11,98;UBERON:0001434,4.18e-11,100;UBERON:0002193,3.58e-10,108;UBERON:0002204,1.11e-08,167;UBERON:0003081,4.88e-08,203;UBERON:0000926,3.34e-07,315;UBERON:0004120,3.34e-07,315;UBERON:0006603,3.34e-07,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0.377875943688809,0,0.232429036905685,0,0.309706370895104,0.28769239232215,0,0.945928919554341,0.344745680736619,2.5819387343353,0,0,0,0,0.612167784741805,0.962787081228281,1.27867425159808,0,0,0,1.45104619314292,1.70215567407342,1.24564449799115,0.251248665256743,0,0,0.605399502633369,1.84138817993782,2.21523671208619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0.640456598628376,0.520237390239513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.264818361626438,0,0,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0,0,0,0,0.492663237895943,0.528290604079356,4.35389042635621,2.01767934783746,2.77733353538036,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.232420756919918,0,0,0,0.114814448164607,0.728364672026868,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0,0.143124886741991,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0.421258456238981,0,0,0,0,0.141405431953713,1.13008116620243,0,0,0,0,0,0,0.30982349809975,0,0,0,0,1.77380532035299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0.102268682502155,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0.296521128680622,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,1.50323419414493,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514784993585894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1440859791201,0,0,1.08599920350743,1.72844298240254,0.979762080328227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0.276697269872462,0,0.151649117541648,0,0,0,0,0,0,1.10961172300523,0,0,0,1.14420034198462,0.151230923763239,0,0,0,0,0.155262956876259,0,0.265841714557995,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353378291891762,0,0.506827321959218,0.256241518587947,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672567444437648,0,0,0,0.115233987555779,0,0,0,0,0,0.078493092850514,0.314231179832004,0,0,0,0,0.0714765441766563,0.316027223465453,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0.513314034281235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0,0,0,0,0.639701945702943,0,0,0.124149428591716,0,0.12729431655633,0.202117188958219,0.653150243690884,0.342233301085281,0,0,0.99798106963804,0,0,0,0,0,0,0,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0.377875943688809,0,0.232429036905685,0,0.309706370895104,0.28769239232215,0,0.945928919554341,0.344745680736619,2.5819387343353,0,0,0,0,0.612167784741805,0.962787081228281,1.27867425159808,0,0,0,1.45104619314292,1.70215567407342,1.24564449799115,0.251248665256743,0,0,0.605399502633369,1.84138817993782,2.21523671208619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0.640456598628376,0.520237390239513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.264818361626438,0,0,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0,0,0,0,0.492663237895943,0.528290604079356,4.35389042635621,2.01767934783746,2.77733353538036,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.232420756919918,0,0,0,0.114814448164607,0.728364672026868,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0,0.143124886741991,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0.421258456238981,0,0,0,0,0.141405431953713,1.13008116620243,0,0,0,0,0,0,0.30982349809975,0,0,0,0,1.77380532035299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0.102268682502155,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0.296521128680622,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,1.50323419414493,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514784993585894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1440859791201,0,0,1.08599920350743,1.72844298240254,0.979762080328227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0.276697269872462,0,0.151649117541648,0,0,0,0,0,0,1.10961172300523,0,0,0,1.14420034198462,0.151230923763239,0,0,0,0,0.155262956876259,0,0.265841714557995,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353378291891762,0,0.506827321959218,0.256241518587947,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672567444437648,0,0,0,0.115233987555779,0,0,0,0,0,0.078493092850514,0.314231179832004,0,0,0,0,0.0714765441766563,0.316027223465453,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0.513314034281235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0,0,0,0,0.639701945702943,0,0,0.124149428591716,0,0.12729431655633,0.202117188958219,0.653150243690884,0.342233301085281,0,0,0.99798106963804,0,0,0,0,0,0,0,0.665756774185513,0,0 | ||
|short_description=p@chr3:119362088..119362099,- | |short_description=p@chr3:119362088..119362099,- | ||
}} | }} |
Latest revision as of 14:49, 29 July 2015
Short description: | p@chr3:119362088..119362099, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:119362088..119362099, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 4.16e-20 | 5 |
basophil mast progenitor cell | 4.16e-20 | 5 |
myeloid lineage restricted progenitor cell | 1.53e-17 | 66 |
granulocyte monocyte progenitor cell | 2.91e-17 | 67 |
myeloid leukocyte | 5.66e-16 | 72 |
defensive cell | 4.18e-13 | 48 |
phagocyte | 4.18e-13 | 48 |
uterine smooth muscle cell | 5.62e-12 | 1 |
classical monocyte | 1.18e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.18e-11 | 42 |
smooth muscle cell of the pulmonary artery | 1.47e-11 | 1 |
endocrine cell | 1.96e-11 | 9 |
monopoietic cell | 2.67e-10 | 59 |
monocyte | 2.67e-10 | 59 |
monoblast | 2.67e-10 | 59 |
promonocyte | 2.67e-10 | 59 |
myeloid cell | 3.58e-10 | 108 |
common myeloid progenitor | 3.58e-10 | 108 |
macrophage dendritic cell progenitor | 6.14e-10 | 61 |
hematopoietic lineage restricted progenitor cell | 5.30e-09 | 120 |
leukocyte | 9.24e-08 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.61e-15 | 76 |
bone element | 7.36e-14 | 82 |
skeletal element | 1.68e-12 | 90 |
left cardiac atrium | 4.06e-12 | 1 |
immune system | 4.73e-12 | 93 |
hematopoietic system | 2.31e-11 | 98 |
blood island | 2.31e-11 | 98 |
skeletal system | 4.18e-11 | 100 |
hemolymphoid system | 3.58e-10 | 108 |
musculoskeletal system | 1.11e-08 | 167 |
lateral plate mesoderm | 4.88e-08 | 203 |
mesoderm | 3.34e-07 | 315 |
mesoderm-derived structure | 3.34e-07 | 315 |
presumptive mesoderm | 3.34e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 9.30e-15 | 3 |
leiomyoma | 9.30e-15 | 3 |
benign neoplasm | 2.63e-11 | 4 |