FFCP PHASE1:Hg19::chr17:42422662..42422678,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2896 | |EntrezGene=2896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4601 | |HGNC=4601 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H8S1 | |UniProt=Q9H8S1 | ||
|association_with_transcript=0bp_to_ENST00000357351,ENST00000393566_5end | |association_with_transcript=0bp_to_ENST00000357351,ENST00000393566_5end | ||
|cluster_id=chr17:42422662..42422678,+ | |||
|coexpression_cluster_id=C143 | |||
|description=CAGE_peak_1_at_GRN_5end | |description=CAGE_peak_1_at_GRN_5end | ||
|id=chr17:42422662..42422678,+ | |id=chr17:42422662..42422678,+ | ||
|ontology_enrichment_celltype=CL:0002009!1.12e-26!65;CL:0002194!4.78e-26!63;CL:0000576!4.78e-26!63;CL:0000040!4.78e-26!63;CL:0000559!4.78e-26!63;CL:0002057!1.65e-22!42;CL:0000557!8.99e-22!71;CL:0000548!1.05e-20!679;CL:0000004!1.05e-20!679;CL:0000255!1.05e-20!679;CL:0000766!1.70e-20!76;CL:0000839!3.59e-20!70;CL:0000860!4.08e-20!45;CL:0000012!7.88e-20!682;CL:0000063!1.46e-19!578;CL:0002371!2.68e-18!591;CL:0000144!6.80e-18!625;CL:0000066!6.02e-13!254;CL:0000003!1.77e-10!722;CL:0000763!6.68e-09!112;CL:0000049!6.68e-09!112;CL:0000213!1.18e-08!57;CL:0000215!1.18e-08!57;CL:0000220!4.24e-08!246;CL:0000115!5.06e-08!35;CL:0002321!8.81e-08!248;CL:0002078!8.85e-08!44;CL:0000222!6.38e-07!119 | |ontology_enrichment_celltype=CL:0002009!1.12e-26!65;CL:0002194!4.78e-26!63;CL:0000576!4.78e-26!63;CL:0000040!4.78e-26!63;CL:0000559!4.78e-26!63;CL:0002057!1.65e-22!42;CL:0000557!8.99e-22!71;CL:0000548!1.05e-20!679;CL:0000004!1.05e-20!679;CL:0000255!1.05e-20!679;CL:0000766!1.70e-20!76;CL:0000839!3.59e-20!70;CL:0000860!4.08e-20!45;CL:0000012!7.88e-20!682;CL:0000063!1.46e-19!578;CL:0002371!2.68e-18!591;CL:0000144!6.80e-18!625;CL:0000066!6.02e-13!254;CL:0000003!1.77e-10!722;CL:0000763!6.68e-09!112;CL:0000049!6.68e-09!112;CL:0000213!1.18e-08!57;CL:0000215!1.18e-08!57;CL:0000220!4.24e-08!246;CL:0000115!5.06e-08!35;CL:0002321!8.81e-08!248;CL:0002078!8.85e-08!44;CL:0000222!6.38e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000473;8.84e-20;39!CL:0000234;8.84e-20;39!CL:0000860;1.52e-19;33!CL:0002057;1.52e-19;33!CL:0000576;1.16e-15;48!CL:0000766;3.40e-10;69!CL:0000115;2.86e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,7.77e-29,61;CL:0002194,3.19e-28,59;CL:0000576,3.19e-28,59;CL:0000040,3.19e-28,59;CL:0000559,3.19e-28,59;CL:0000473,1.55e-26,48;CL:0000234,1.55e-26,48;CL:0000557,1.98e-23,67;CL:0000860,1.65e-22,42;CL:0002057,1.65e-22,42;CL:0000766,5.67e-22,72;CL:0000839,9.66e-22,66;CL:0000066,7.85e-13,253;CL:0000763,2.04e-09,108;CL:0000049,2.04e-09,108;CL:0000213,5.36e-09,58;CL:0000215,5.36e-09,58;CL:0000115,2.15e-08,36;CL:0002078,3.95e-08,45;CL:0002321,4.30e-08,250;CL:0000222,2.89e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002057;1.32e-16;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!6.38e-26!216;UBERON:0000926!1.97e-21!448;UBERON:0004120!1.97e-21!448;UBERON:0006603!1.97e-21!448;UBERON:0002371!3.83e-20!80;UBERON:0002193!8.22e-20!112;UBERON:0002405!5.70e-19!115;UBERON:0001474!1.66e-18!86;UBERON:0002390!6.28e-17!102;UBERON:0003061!6.28e-17!102;UBERON:0004765!1.69e-16!101;UBERON:0001434!1.69e-16!101;UBERON:0002204!5.37e-13!167;UBERON:0000468!1.02e-12!659;UBERON:0000467!8.54e-11!625;UBERON:0000480!1.35e-10!626;UBERON:0000923!4.46e-08!604;UBERON:0005291!4.46e-08!604;UBERON:0006598!4.46e-08!604;UBERON:0002532!4.46e-08!604;UBERON:0002050!5.11e-08!605;UBERON:0005423!5.11e-08!605;UBERON:0000922!1.72e-07!612 | |ontology_enrichment_uberon=UBERON:0003081!6.38e-26!216;UBERON:0000926!1.97e-21!448;UBERON:0004120!1.97e-21!448;UBERON:0006603!1.97e-21!448;UBERON:0002371!3.83e-20!80;UBERON:0002193!8.22e-20!112;UBERON:0002405!5.70e-19!115;UBERON:0001474!1.66e-18!86;UBERON:0002390!6.28e-17!102;UBERON:0003061!6.28e-17!102;UBERON:0004765!1.69e-16!101;UBERON:0001434!1.69e-16!101;UBERON:0002204!5.37e-13!167;UBERON:0000468!1.02e-12!659;UBERON:0000467!8.54e-11!625;UBERON:0000480!1.35e-10!626;UBERON:0000923!4.46e-08!604;UBERON:0005291!4.46e-08!604;UBERON:0006598!4.46e-08!604;UBERON:0002532!4.46e-08!604;UBERON:0002050!5.11e-08!605;UBERON:0005423!5.11e-08!605;UBERON:0000922!1.72e-07!612 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,4.21e-25,203;UBERON:0002405,8.59e-22,93;UBERON:0002371,1.57e-21,76;UBERON:0004765,5.84e-21,90;UBERON:0002193,7.97e-21,108;UBERON:0000926,3.50e-20,315;UBERON:0004120,3.50e-20,315;UBERON:0006603,3.50e-20,315;UBERON:0001474,1.03e-19,82;UBERON:0001434,3.11e-18,100;UBERON:0002390,6.85e-18,98;UBERON:0003061,6.85e-18,98;UBERON:0002204,2.64e-14,167;UBERON:0005423,6.35e-08,581;UBERON:0002050,1.82e-07,564;UBERON:0000922,2.40e-07,592;UBERON:0000923,3.07e-07,560;UBERON:0010316,3.07e-07,560;UBERON:0005291,3.07e-07,560;UBERON:0006598,3.07e-07,560;UBERON:0010317,3.07e-07,560;UBERON:0002532,3.07e-07,560 | |||
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| ||
|short_description=p1@GRN | |short_description=p1@GRN | ||
}} | }} |
Latest revision as of 21:00, 24 September 2015
Short description: | p1@GRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GRN_5end |
Coexpression cluster: | C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast |
Association with transcript: | 0bp_to_ENST00000357351, ENST00000393566_5end |
EntrezGene: | GRN |
HGNC: | 4601 |
UniProt: | Q9H8S1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 7.77e-29 | 61 |
monopoietic cell | 3.19e-28 | 59 |
monocyte | 3.19e-28 | 59 |
monoblast | 3.19e-28 | 59 |
promonocyte | 3.19e-28 | 59 |
defensive cell | 1.55e-26 | 48 |
phagocyte | 1.55e-26 | 48 |
granulocyte monocyte progenitor cell | 1.98e-23 | 67 |
classical monocyte | 1.65e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.65e-22 | 42 |
myeloid leukocyte | 5.67e-22 | 72 |
myeloid lineage restricted progenitor cell | 9.66e-22 | 66 |
epithelial cell | 7.85e-13 | 253 |
myeloid cell | 2.04e-09 | 108 |
common myeloid progenitor | 2.04e-09 | 108 |
lining cell | 5.36e-09 | 58 |
barrier cell | 5.36e-09 | 58 |
endothelial cell | 2.15e-08 | 36 |
meso-epithelial cell | 3.95e-08 | 45 |
embryonic cell | 4.30e-08 | 250 |
mesodermal cell | 2.89e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 4.21e-25 | 203 |
immune system | 8.59e-22 | 93 |
bone marrow | 1.57e-21 | 76 |
skeletal element | 5.84e-21 | 90 |
hemolymphoid system | 7.97e-21 | 108 |
mesoderm | 3.50e-20 | 315 |
mesoderm-derived structure | 3.50e-20 | 315 |
presumptive mesoderm | 3.50e-20 | 315 |
bone element | 1.03e-19 | 82 |
skeletal system | 3.11e-18 | 100 |
hematopoietic system | 6.85e-18 | 98 |
blood island | 6.85e-18 | 98 |
musculoskeletal system | 2.64e-14 | 167 |
developing anatomical structure | 6.35e-08 | 581 |
embryonic structure | 1.82e-07 | 564 |
embryo | 2.40e-07 | 592 |
germ layer | 3.07e-07 | 560 |
germ layer / neural crest | 3.07e-07 | 560 |
embryonic tissue | 3.07e-07 | 560 |
presumptive structure | 3.07e-07 | 560 |
germ layer / neural crest derived structure | 3.07e-07 | 560 |
epiblast (generic) | 3.07e-07 | 560 |