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MCL coexpression mm9:176: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0682179984609265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.015010936092121,0.0419359757688424,0.00404316429205679,0,1.00164409336282,0.833835279371789,0.9335158106482,0.546512507250147,0.678972934327493,0,0,0,0,0,0,0.0800187930544913,0,0.0767842548803405,0.126730149241647,0,0,0,0,0.862822974498269,1.10521648277231,0.0584018841996621,0.147681830935052,0.0829019901297716,0.294954253617995,0.274959667229359,0.0951629323478916,0.0761636383140293,0,0.322458878535173,0.179192416738202,0.208018178957679,0.101668926708099,0.163590153725977,0.119092641463054,0.325665874540913,0.327466262382121,0.264535421241321,0.238124371123597,0.243394985389928,0.0742309351586685,0.0464738639419632,0.058098522361334,0,0,0,0,0,0,0,0,0,0,0.0572260417947564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111524892460631,0.153583831287274,0,0,0,0,0.113803446464706,0.163608743054207,0.0543666627494034,0.129576677486723,0.09889124026805,0.166779398825183,0.122046233034924,0.021990775390271,0,0,0,0.0310272270763498,0,0.0397806053103597,0.0311445666663396,0.0285860945550467,0.0523528812100954,0.074598306112166,0.0999233952154288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152465664603217,0.0812786020093627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170746144160095,0.166976485593938,0,0,0,0,0,0,0.0575355943757708,0,0,0,0,0.121008441369486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0152717005855795,0.0528318955547673,0.0165836175596622,0,0.00582125600900765,0.0598613713759042,0.0601512847225769,0,0,0,0,0,0,0,0,0,0.198741398029835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183387185340013,0.164449590503707,0.196699873644339,0.180573004668638,0.226621173458704,0.241098380793901,0.224020645200257,0.161464196262218,0.162308177550168,0.181203192176975,0,0,0,0,0,0,0.0181176769751714,0,0,0,0,0,0.0388749848471105,0.0269518943326477,0.0242538736058389,0,0.00236688291644715,0,0,0.017111291122631,0,0,0,0.00932664430000565,0.0267016372105439,0.0352754493378881,0.0069685081341716,0,0.027232237033188,0,0,0,0,0,0,0.0968441960560167,0,0,0,0,0
|gostat_on_MCL_coexpression=
}}

Latest revision as of 14:49, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:116195461..116195493,-p@chr11:116195461..116195493
-
Mm9::chr11:94506584..94506586,+p@chr11:94506584..94506586
+
Mm9::chr12:112908837..112908848,-p@chr12:112908837..112908848
-
Mm9::chr14:34132927..34132930,+p5@Arhgap22
Mm9::chr14:56358439..56358450,-p5@Dhrs1
Mm9::chr14:56364361..56364479,-p1@Dhrs1
Mm9::chr15:88808353..88808379,-p@chr15:88808353..88808379
-
Mm9::chr15:88808972..88808994,-p1@Mlc1
Mm9::chr15:88809203..88809239,-p3@Mlc1
Mm9::chr16:15966748..15966763,-p@chr16:15966748..15966763
-
Mm9::chr16:18348434..18348445,+p6@Arvcf
Mm9::chr16:38902418..38902429,+p5@Igsf11
Mm9::chr17:66121975..66121990,-p1@Rab31
Mm9::chr18:69681228..69681237,+p44@Tcf4
Mm9::chr19:40457627..40457636,-p9@Sorbs1
Mm9::chr19:8788794..8788806,-p6@Slc3a2
Mm9::chr1:137268461..137268465,-p@chr1:137268461..137268465
-
Mm9::chr1:137268883..137268909,-p@chr1:137268883..137268909
-
Mm9::chr1:137270996..137271011,-p@chr1:137270996..137271011
-
Mm9::chr1:137271532..137271675,-p1@Shisa4
Mm9::chr1:174127882..174127895,-p@chr1:174127882..174127895
-
Mm9::chr1:174127976..174128005,-p@chr1:174127976..174128005
-
Mm9::chr1:174128019..174128042,-p@chr1:174128019..174128042
-
Mm9::chr1:174128178..174128192,-p@chr1:174128178..174128192
-
Mm9::chr1:174128194..174128210,-p@chr1:174128194..174128210
-
Mm9::chr1:174128305..174128333,-p@chr1:174128305..174128333
-
Mm9::chr1:174128350..174128367,+p@chr1:174128350..174128367
+
Mm9::chr1:174128464..174128474,-p@chr1:174128464..174128474
-
Mm9::chr1:174128636..174128647,-p@chr1:174128636..174128647
-
Mm9::chr1:174128672..174128690,-p@chr1:174128672..174128690
-
Mm9::chr1:174128738..174128756,+p@chr1:174128738..174128756
+
Mm9::chr1:174128785..174128802,+p@chr1:174128785..174128802
+
Mm9::chr1:174129273..174129299,-p@chr1:174129273..174129299
-
Mm9::chr1:174129325..174129338,-p@chr1:174129325..174129338
-
Mm9::chr1:174129353..174129380,-p@chr1:174129353..174129380
-
Mm9::chr1:174130672..174130686,-p@chr1:174130672..174130686
-
Mm9::chr1:174130688..174130720,-p@chr1:174130688..174130720
-
Mm9::chr1:174136785..174136796,-p3@Pea15a
Mm9::chr1:174136815..174136886,-p1@Pea15a
Mm9::chr1:174136906..174136917,-p2@Pea15a
Mm9::chr1:72873148..72873157,+p@chr1:72873148..72873157
+
Mm9::chr1:72873192..72873206,+p@chr1:72873192..72873206
+
Mm9::chr2:12932526..12932546,-p6@C1ql3
Mm9::chr4:122627466..122627472,-p@chr4:122627466..122627472
-
Mm9::chr4:153975408..153975411,+p1@ENSMUST00000132106
Mm9::chr5:109122987..109123024,-p@chr5:109122987..109123024
-
Mm9::chr5:109123052..109123064,-p@chr5:109123052..109123064
-
Mm9::chr5:93111808..93111831,+p@chr5:93111808..93111831
+
Mm9::chr6:17121579..17121621,-p1@ENSMUST00000150251
Mm9::chr6:92777773..92777784,+p4@ENSMUST00000133858
Mm9::chr7:25292141..25292158,+p2@Zfp428
Mm9::chr7:52151495..52151557,+p2@Fuz
Mm9::chr8:96676635..96676651,+p1@Mt3
Mm9::chr8:96677851..96677892,-p@chr8:96677851..96677892
-
Mm9::chr8:96677906..96677921,-p@chr8:96677906..96677921
-
Mm9::chr9:108998118..108998123,+p10@Plxnb1
Mm9::chr9:108999173..108999176,+p13@Plxnb1
Mm9::chr9:37174919..37174932,+p3@Hepacam
Mm9::chr9:37174939..37174963,+p2@Hepacam
Mm9::chrX:138740713..138740730,-p1@Kcne1l


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
nervous system2.46e-4775
central nervous system1.13e-4573
regional part of nervous system3.65e-4554
ectoderm-derived structure1.13e-4495
ectoderm1.13e-4495
presumptive ectoderm1.13e-4495
neurectoderm7.42e-4364
neural plate7.42e-4364
presumptive neural plate7.42e-4364
neural tube1.24e-4252
neural rod1.24e-4252
future spinal cord1.24e-4252
neural keel1.24e-4252
ecto-epithelium6.54e-3773
brain1.72e-3647
future brain1.72e-3647
regional part of brain1.61e-3546
pre-chordal neural plate4.86e-3449
gray matter1.16e-3234
anterior neural tube3.87e-3140
regional part of forebrain3.21e-3039
forebrain3.21e-3039
future forebrain3.21e-3039
brain grey matter4.91e-2729
regional part of telencephalon4.91e-2729
telencephalon4.91e-2729
structure with developmental contribution from neural crest1.23e-2592
cerebral cortex4.69e-1921
cerebral hemisphere4.69e-1921
pallium4.69e-1921
regional part of cerebral cortex7.85e-1617
tube8.41e-14114
anatomical conduit1.28e-12122
occipital lobe1.26e-1110
visual cortex1.26e-1110
neocortex1.26e-1110
posterior neural tube2.84e-1112
chordal neural plate2.84e-1112
basal ganglion5.11e-098
nuclear complex of neuraxis5.11e-098
aggregate regional part of brain5.11e-098
collection of basal ganglia5.11e-098
cerebral subcortex5.11e-098
cell layer4.39e-08176
epithelium9.14e-08174
spinal cord9.86e-086
dorsal region element9.86e-086
dorsum9.86e-086
organ system subdivision1.40e-07194
anatomical cluster5.14e-07244


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.334266
MA0004.10.175742
MA0006.10.29076
MA0007.10.811966
MA0009.10.178741
MA0014.10.243675
MA0017.10.787037
MA0019.10.085553
MA0024.10.153507
MA0025.10.337502
MA0027.11.64676
MA0028.10.186814
MA0029.11.38666
MA0030.10.445687
MA0031.10.793793
MA0038.10.173833
MA0040.10.186256
MA0041.10.00599051
MA0042.10.0282195
MA0043.10.674294
MA0046.10.200657
MA0048.10.136557
MA0050.10.0902873
MA0051.10.0483765
MA0052.10.558716
MA0055.11.30858
MA0056.10
MA0057.12.6908
MA0058.10.0794672
MA0059.10.0895241
MA0060.10.00858
MA0061.10.431121
MA0063.10
MA0066.11.46742
MA0067.10.42434
MA0068.13.8223
MA0069.10.191372
MA0070.10.544981
MA0071.10.700348
MA0072.10.180375
MA0073.110.6386
MA0074.10.313869
MA0076.10.422693
MA0077.10.167625
MA0078.10.21446
MA0081.10.232699
MA0083.10.239492
MA0084.10.707428
MA0087.10.21132
MA0088.10.377018
MA0089.10
MA0090.12.71999
MA0091.10.374849
MA0092.10.481092
MA0093.10.103815
MA0095.10
MA0098.10
MA0100.10.295638
MA0101.10.208926
MA0103.10.397063
MA0105.10.684313
MA0106.10.48337
MA0107.10.226886
MA0108.20.652386
MA0109.10
MA0111.10.520858
MA0113.10.194181
MA0114.10.599656
MA0115.11.95209
MA0116.10.0335495
MA0117.10.2206
MA0119.10.0333445
MA0122.11.22826
MA0124.10.382
MA0125.10.325351
MA0130.10
MA0131.10.0836554
MA0132.10
MA0133.10
MA0135.10.264865
MA0136.10.0380686
MA0139.10.634078
MA0140.10.862834
MA0141.10.948417
MA0142.10.761432
MA0143.10.461049
MA0144.10.0154961
MA0145.10.715351
MA0146.10.142668
MA0147.10.0515573
MA0148.12.17584
MA0149.10.00653643
MA0062.20.119878
MA0035.20.031305
MA0039.20.867721
MA0138.20.0803896
MA0002.20.136935
MA0137.20.065098
MA0104.20.0472729
MA0047.22.57663
MA0112.20.175468
MA0065.21.25764
MA0150.10.316592
MA0151.10
MA0152.10.391274
MA0153.10.276502
MA0154.10.286761
MA0155.11.07666
MA0156.10.0587413
MA0157.11.14311
MA0158.10
MA0159.10.52933
MA0160.10.387967
MA0161.10
MA0162.10.0596808
MA0163.10.913539
MA0164.10.0381653
MA0080.20.0153638
MA0018.20.158612
MA0099.20.268148
MA0079.26.33529
MA0102.20.755292
MA0258.10.368792
MA0259.10.177286
MA0442.10
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