FFCP PHASE1:Hg19::chr4:3371934..3371949,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:3371934..3371949,+
|short_description=p5@RGS12
|description=CAGE_peak_5_at_RGS12_5end
|association_with_transcript=21bp_to_ENST00000506998_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6002 | |EntrezGene=6002 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9994 | |HGNC=9994 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=21bp_to_ENST00000506998_5end | |||
|cluster_id=chr4:3371934..3371949,+ | |||
|description=CAGE_peak_5_at_RGS12_5end | |||
|id=chr4:3371934..3371949,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.75e-32!42;CL:0002009!2.43e-30!65;CL:0000860!7.15e-29!45;CL:0002194!1.76e-28!63;CL:0000576!1.76e-28!63;CL:0000040!1.76e-28!63;CL:0000559!1.76e-28!63;CL:0000557!1.03e-26!71;CL:0000766!1.17e-24!76;CL:0000839!2.66e-24!70;CL:0000763!3.24e-14!112;CL:0000049!3.24e-14!112;CL:0000738!4.70e-10!140;CL:0002087!6.36e-10!119;CL:0000115!7.19e-10!35;CL:0002031!1.47e-09!124;CL:0002393!2.02e-08!9;CL:0002397!2.02e-08!9;CL:0002139!1.37e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.24e-47;33!CL:0002057;7.24e-47;33!CL:0000473;3.13e-41;39!CL:0000234;3.13e-41;39!CL:0000576;4.56e-34;48!CL:0000766;6.56e-28;69!CL:0000763;2.95e-11;100!CL:0002139;8.86e-11;24!CL:0000115;2.52e-09;36!CL:0002393;3.22e-09;6!CL:0002397;3.22e-09;6!CL:0002138;3.22e-09;6!CL:0000767;7.40e-08;3!CL:0000738;2.28e-07;136!CL:0002144;2.80e-07;3!CL:0002087;4.26e-07;104!CL:0000875;5.84e-07;3!CL:0002396;5.84e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,5.60e-70,48;CL:0000234,5.60e-70,48;CL:0000860,2.02e-65,42;CL:0002057,2.02e-65,42;CL:0002009,1.23e-60,61;CL:0002194,2.91e-56,59;CL:0000576,2.91e-56,59;CL:0000040,2.91e-56,59;CL:0000559,2.91e-56,59;CL:0000557,3.94e-54,67;CL:0000766,1.01e-51,72;CL:0000839,4.44e-49,66;CL:0000763,3.88e-34,108;CL:0000049,3.88e-34,108;CL:0000738,1.02e-25,136;CL:0002031,7.52e-25,120;CL:0002087,3.10e-23,115;CL:0002032,1.06e-18,161;CL:0000837,1.06e-18,161;CL:0000037,2.25e-18,168;CL:0000988,8.44e-17,177;CL:0002393,5.23e-15,9;CL:0002397,5.23e-15,9;CL:0002139,6.17e-11,24;CL:0000115,1.18e-10,36;CL:0005020,2.16e-09,6;CL:0002138,2.16e-09,6;CL:0005022,2.16e-09,6;CL:0000048,2.43e-08,427;CL:0000723,5.22e-08,433;CL:0002078,8.32e-08,45;CL:0000767,1.09e-07,3;CL:0000034,1.40e-07,441;CL:0002144,2.21e-07,3;CL:0000875,3.37e-07,3;CL:0002396,3.37e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;8.85e-47;42!CL:0000049;5.32e-12;108!CL:0005022;3.22e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.96e-21!112;UBERON:0002371!3.06e-21!80;UBERON:0002405!3.70e-21!115;UBERON:0003081!4.18e-21!216;UBERON:0001474!5.54e-20!86;UBERON:0002390!7.50e-18!102;UBERON:0003061!7.50e-18!102;UBERON:0002204!7.92e-18!167;UBERON:0004765!1.74e-17!101;UBERON:0001434!1.74e-17!101;UBERON:0001049!4.28e-14!57;UBERON:0005068!4.28e-14!57;UBERON:0006241!4.28e-14!57;UBERON:0007135!4.28e-14!57;UBERON:0000467!1.95e-13!625;UBERON:0000055!2.58e-13!69;UBERON:0000480!2.63e-13!626;UBERON:0002049!8.65e-13!79;UBERON:0007798!8.65e-13!79;UBERON:0001893!1.11e-12!34;UBERON:0002780!1.43e-12!41;UBERON:0001890!1.43e-12!41;UBERON:0006240!1.43e-12!41;UBERON:0002020!2.46e-12!34;UBERON:0003528!2.46e-12!34;UBERON:0002791!3.75e-12!33;UBERON:0003080!5.10e-12!42;UBERON:0002616!6.12e-12!59;UBERON:0001869!9.44e-12!32;UBERON:0000025!1.41e-11!194;UBERON:0001017!7.20e-11!82;UBERON:0001981!2.54e-10!60;UBERON:0007500!2.54e-10!60;UBERON:0004537!2.54e-10!60;UBERON:0006965!2.54e-10!60;UBERON:0005743!3.58e-10!86;UBERON:0004111!4.18e-10!241;UBERON:0000468!5.06e-10!659;UBERON:0000955!6.51e-10!69;UBERON:0006238!6.51e-10!69;UBERON:0001950!1.75e-09!20;UBERON:0002619!2.06e-09!22;UBERON:0003075!2.17e-09!86;UBERON:0007284!2.17e-09!86;UBERON:0001637!2.24e-09!42;UBERON:0003509!2.24e-09!42;UBERON:0004572!2.24e-09!42;UBERON:0000073!2.28e-09!94;UBERON:0001016!2.28e-09!94;UBERON:0000956!2.89e-09!25;UBERON:0000203!2.89e-09!25;UBERON:0004535!3.74e-09!110;UBERON:0003056!5.50e-09!61;UBERON:0001009!1.76e-08!113;UBERON:0002346!2.36e-08!90;UBERON:0000477!2.65e-08!286;UBERON:0004573!4.79e-08!33;UBERON:0004571!4.79e-08!33;UBERON:0000923!4.80e-08!604;UBERON:0005291!4.80e-08!604;UBERON:0006598!4.80e-08!604;UBERON:0002532!4.80e-08!604;UBERON:0002050!6.07e-08!605;UBERON:0005423!6.07e-08!605;UBERON:0004872!8.84e-08!84;UBERON:0000922!1.53e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;1.72e-09;8!UBERON:0004536;1.72e-09;8!UBERON:0006558;1.72e-09;8!UBERON:0002465;1.92e-07;10!UBERON:0010523;2.80e-07;3!UBERON:0001915;2.80e-07;3!UBERON:0001982;2.80e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,4.43e-48,93;UBERON:0002371,2.77e-46,76;UBERON:0001474,5.28e-42,82;UBERON:0002193,1.70e-39,108;UBERON:0004765,3.49e-37,90;UBERON:0002390,3.76e-33,98;UBERON:0003061,3.76e-33,98;UBERON:0001434,3.04e-32,100;UBERON:0003081,9.92e-29,203;UBERON:0002204,6.37e-22,167;UBERON:0000926,1.62e-13,315;UBERON:0004120,1.62e-13,315;UBERON:0006603,1.62e-13,315;UBERON:0000055,4.17e-10,68;UBERON:0001473,1.25e-09,8;UBERON:0004536,1.25e-09,8;UBERON:0006558,1.25e-09,8;UBERON:0002049,4.00e-08,78;UBERON:0007798,4.00e-08,78;UBERON:0002465,1.49e-07,10;UBERON:0010523,2.21e-07,3;UBERON:0001915,2.21e-07,3;UBERON:0001982,2.21e-07,3 | |||
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| ||
|short_description=p5@RGS12 | |||
}} | }} |
Latest revision as of 14:04, 17 September 2015
Short description: | p5@RGS12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RGS12_5end |
Coexpression cluster: | NA |
Association with transcript: | 21bp_to_ENST00000506998_5end |
EntrezGene: | RGS12 |
HGNC: | 9994 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immune system | 4.43e-48 | 93 |
bone marrow | 2.77e-46 | 76 |
bone element | 5.28e-42 | 82 |
hemolymphoid system | 1.70e-39 | 108 |
skeletal element | 3.49e-37 | 90 |
hematopoietic system | 3.76e-33 | 98 |
blood island | 3.76e-33 | 98 |
skeletal system | 3.04e-32 | 100 |
lateral plate mesoderm | 9.92e-29 | 203 |
musculoskeletal system | 6.37e-22 | 167 |
mesoderm | 1.62e-13 | 315 |
mesoderm-derived structure | 1.62e-13 | 315 |
presumptive mesoderm | 1.62e-13 | 315 |
vessel | 4.17e-10 | 68 |
lymphatic vessel | 1.25e-09 | 8 |
lymph vasculature | 1.25e-09 | 8 |
lymphatic part of lymphoid system | 1.25e-09 | 8 |
vasculature | 4.00e-08 | 78 |
vascular system | 4.00e-08 | 78 |
lymphoid system | 1.49e-07 | 10 |
microcirculatory vessel | 2.21e-07 | 3 |
endothelium of capillary | 2.21e-07 | 3 |
capillary | 2.21e-07 | 3 |