FFCP PHASE1:Hg19::chr11:8190534..8190595,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79608 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30338 | |||
|TSSclassifier=strong | |||
|UniProt=Q7Z5B4,B0B1U0,E9PNI0,E9PKX8,E9PK46,F5GZ89,B7Z1U4,B7Z3Z0 | |||
|association_with_transcript=0bp_to_ENST00000309737,ENST00000335425,ENST00000419822,ENST00000425599,ENST00000526962,ENST00000528463,ENST00000531450,ENST00000539720,ENST00000543346,NM_001135109,NM_001206671,NM_001206672,NM_024557,NR_045405,uc001mgc.2,uc001mgd.2,uc001mge.2,uc001mgf.3,uc009yfm.2,uc009yfn.2,uc010rbl.1,uc010rbm.1_5end | |||
|cluster_id=chr11:8190534..8190595,- | |||
|coexpression_cluster_id=C652 | |||
|description=CAGE_peak_1_at_RIC3_5end | |||
|id=chr11:8190534..8190595,- | |||
|ontology_enrichment_celltype=CL:0000838!1.86e-09!52;CL:0000542!5.31e-09!53;CL:0000051!5.31e-09!53;CL:0000791!5.43e-09!18;CL:0000789!5.43e-09!18;CL:0002420!5.43e-09!18;CL:0002419!5.43e-09!18;CL:0000790!5.43e-09!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.99e-10;18!CL:0000789;3.99e-10;18!CL:0002419;3.99e-10;18!CL:0000625;2.69e-07;11!CL:0000236;3.57e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.27e-10,52;CL:0000542,3.54e-10,53;CL:0000051,3.54e-10,53;CL:0000791,4.28e-10,18;CL:0000789,4.28e-10,18;CL:0002420,4.28e-10,18;CL:0002419,4.28e-10,18;CL:0000790,4.28e-10,18;CL:0000236,2.43e-07,14;CL:0000625,2.85e-07,11 | |||
|ontology_enrichment_development_v019=UBERON:0006601;7.62e-11;82!CL:0000790;3.99e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.99e-56!115;UBERON:0001049!3.94e-34!57;UBERON:0005068!3.94e-34!57;UBERON:0006241!3.94e-34!57;UBERON:0007135!3.94e-34!57;UBERON:0001017!3.91e-30!82;UBERON:0005743!7.68e-30!86;UBERON:0000073!1.71e-28!94;UBERON:0001016!1.71e-28!94;UBERON:0003080!2.27e-27!42;UBERON:0002780!3.41e-27!41;UBERON:0001890!3.41e-27!41;UBERON:0006240!3.41e-27!41;UBERON:0002616!4.14e-27!59;UBERON:0003075!2.28e-25!86;UBERON:0007284!2.28e-25!86;UBERON:0000955!1.30e-24!69;UBERON:0006238!1.30e-24!69;UBERON:0002346!1.23e-23!90;UBERON:0002020!3.33e-22!34;UBERON:0003528!3.33e-22!34;UBERON:0001893!4.64e-22!34;UBERON:0002791!2.52e-21!33;UBERON:0001869!5.89e-21!32;UBERON:0003056!1.79e-18!61;UBERON:0002619!2.98e-17!22;UBERON:0000956!2.89e-16!25;UBERON:0000203!2.89e-16!25;UBERON:0004121!2.93e-16!169;UBERON:0001950!5.54e-16!20;UBERON:0000153!1.01e-15!129;UBERON:0007811!1.01e-15!129;UBERON:0000924!1.61e-15!173;UBERON:0006601!1.61e-15!173;UBERON:0000033!1.07e-14!123;UBERON:0003076!5.85e-08!15;UBERON:0003057!5.85e-08!15;UBERON:0002420!1.95e-07!9;UBERON:0007245!1.95e-07!9;UBERON:0010009!1.95e-07!9;UBERON:0010011!1.95e-07!9;UBERON:0000454!1.95e-07!9;UBERON:0002308!2.07e-07!9;UBERON:0000125!2.07e-07!9;UBERON:0004732!5.23e-07!13;UBERON:0001871!8.22e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;6.67e-21;41!UBERON:0001890;6.67e-21;41!UBERON:0003528;6.95e-20;34!UBERON:0002020;6.95e-20;34!UBERON:0001893;8.37e-20;34!UBERON:0001869;8.64e-20;32!UBERON:0002791;1.12e-19;32!UBERON:0000073;1.15e-19;53!UBERON:0002616;1.15e-19;53!UBERON:0002619;2.46e-19;22!UBERON:0001950;6.66e-18;20!UBERON:0000956;9.09e-17;25!UBERON:0000203;9.09e-17;25!UBERON:0007023;3.78e-16;114!UBERON:0000955;1.05e-12;68!UBERON:0001017;2.23e-12;75!UBERON:0001016;1.05e-11;83!UBERON:0002420;3.23e-08;9!UBERON:0007245;3.23e-08;9!UBERON:0010009;3.23e-08;9!UBERON:0010011;3.23e-08;9!UBERON:0000454;3.23e-08;9!UBERON:0000125;3.46e-08;9!UBERON:0002308;3.46e-08;9!UBERON:0001894;3.11e-07;7!UBERON:0004732;3.36e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.63e-61,114;UBERON:0001049,4.61e-36,56;UBERON:0005068,4.61e-36,56;UBERON:0006241,4.61e-36,56;UBERON:0007135,4.61e-36,56;UBERON:0000073,5.70e-34,53;UBERON:0002616,5.70e-34,53;UBERON:0001017,3.47e-33,81;UBERON:0001016,4.30e-32,89;UBERON:0002780,5.35e-29,41;UBERON:0001890,5.35e-29,41;UBERON:0003080,5.35e-29,41;UBERON:0006240,5.35e-29,41;UBERON:0000955,5.94e-27,68;UBERON:0006238,5.94e-27,68;UBERON:0003075,1.50e-24,82;UBERON:0007284,1.50e-24,82;UBERON:0003528,2.20e-23,34;UBERON:0002020,2.20e-23,34;UBERON:0001893,3.17e-23,34;UBERON:0002346,4.93e-23,86;UBERON:0001869,5.63e-22,32;UBERON:0002791,8.48e-22,32;UBERON:0002619,2.56e-19,22;UBERON:0010371,3.40e-19,104;UBERON:0003056,2.92e-18,61;UBERON:0001950,7.01e-18,20;UBERON:0000956,1.05e-16,25;UBERON:0000203,1.05e-16,25;UBERON:0011216,6.73e-16,223;UBERON:0004121,8.81e-15,171;UBERON:0000924,8.81e-15,171;UBERON:0006601,8.81e-15,171;UBERON:0010314,3.72e-13,132;UBERON:0003076,2.76e-08,15;UBERON:0003057,2.76e-08,15;UBERON:0002420,3.27e-08,9;UBERON:0007245,3.27e-08,9;UBERON:0010009,3.27e-08,9;UBERON:0010011,3.27e-08,9;UBERON:0000454,3.27e-08,9;UBERON:0000125,3.50e-08,9;UBERON:0002308,3.50e-08,9;UBERON:0001894,3.05e-07,7;UBERON:0006222,3.05e-07,7;UBERON:0004732,3.24e-07,13 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0.331397375727916,0,0,0,0,0.246242116153576,0,1.56727360739044,1.14494394852423,0.273748850145768,0.251085279189606,13.5251728173874,12.8076919541915,13.3021220420118,2.36018566109342,3.0706351847777,0.77408061658038,0,0,0.369754010166788,0,0,3.22960483268332,1.10799081706375,3.40925560699241,4.55722828503289,0.223915474239924,2.26725566213286,0,0,0,0.485168122375632,0,0.411167888021826,0.309706370895104,0.28769239232215,0.256160706529101,0,0.344745680736619,0,0,0.188242339542605,0.545812300115692,0.449446968890169,0,0.962787081228281,0.639337125799041,0,0.199463657621632,0,0,1.13477044938228,1.24564449799115,0.251248665256743,1.0429658368404,0.217188844705117,5.44859552370032,0.368277635987565,0.316462387440884,0,0,0.209658645508376,0,0.150176892841506,0,0.285012743741249,0.19891667719909,0,17.5996244461323,22.3916830617474,26.6852776159066,29.8711155796555,28.4281150795569,25.8638597979517,23.1365705474702,35.2999889178085,51.7983801889598,44.0427892028204,65.7509952375394,10.5737062863221,8.40762844472304,2.10707267820062,42.6860201147018,40.480108563164,25.0833828779401,12.7061736496915,33.5699934632598,27.9334205383493,17.534405556712,6.23898558556972,13.2572658363677,17.7227115666897,8.12411591295047,11.1439448161337,5.72261129263464,4.76869923350661,2.48715016007264,8.98389565778663,36.0336348483807,38.7934200730084,17.7710390468461,8.49820070231746,14.9455992504749,23.7102937383015,12.9040042929946,17.8396632021494,16.9281698002669,10.4549724889321,19.2736152419549,22.3976569520232,21.2382235138988,17.7582939033013,13.1380479507367,25.8056631327658,13.1045695933919,28.095934353263,0,0,0,0,0.50133791063589,0.579386075843295,0,0,0.756278537312543,0.221729397462564,0.966182642624386,17.2892379656981,0,0.370784442784429,1.29818957461873,1.0447784237956,0.531831842075461,2.14641561874808,2.85997455390064,2.97166001063652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788280363383256,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0.252433774244115,0,0,0,0,0,1.35282597214308,1.90922284413584,2.00763216772303,11.7094757884412,14.5782745153634,10.8060366868652,11.5063771067061,8.32658807889574,13.1391849267299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.07020139287323,1.96565443335525,11.8157981336281,0,0,0,0.329250856225877,0,1.3068766413512,0.185176890317059,0,0,0,1.04337364477569,0,0,0,0,0,0,0,0,0,1.87467667973554,3.52762469217605,0.708875486211932,0.447792613514241,1.16253575405585,0.766765358330422,2.46331618947972,0.792435906119034,6.01251535068239,10.9531164596891,8.71072790642022,0.063497894292169,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31583314765545,1.74306691720059,1.69954085009497,1.2162378064119,0,0,0,0,0,0,0,0,0,13.9891839743368,10.7813787429759,12.7059605916951,5.59008173289419,9.10978977003352,6.18631050222156,6.5331343480396,13.3967137847164,0,0,0.414415513436035,0,0,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,16.7482101159539,15.9628508605776,13.1274896098237,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00506470303285,0.644566922551274,0,0,0,1.35359883872224,1.23224539367064,1.56869953835371,1.46139224653261,1.37217117560738,0,0,0,0,0,0,1.01950509218015,0,0,0,0,0.256450125116389,0,1.30151357865721,5.46117361732928,0,0,0,0.650060246036521,0,0,0,0.15350367472613,0,0,0,0.170453254832202,0,1.4875642382488,0,2.4246415373971,1.2138933702666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10674542563371,0,1.68471475667626,0.443430153536676,0,10.6563997938756,4.58782324285425,10.8232965563091,12.8645158747206,15.2204041041892,10.3755729790835,6.48037724685738,5.55187623405989,0.747768497892312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,9.22339965296302,0,0,0.95497793895076,1.48482340416319,1.22864280839693,39.7659059106519,39.1060977621225,0,0,1.47787785689595,8.76691148304707,22.378997158023,0,0,0,0,0,0,0,10.1602707806042,9.57932369387759,0,30.0493151289518,29.964095706278,29.9420697001791,0,0,7.24999575434793,2.95862965542299,0,0,21.3740891409708,0,0,34.5439140467397,41.1233855712641,57.9810598004916,57.7223736840993,62.9516428371056,40.8056838706389,0,0,10.619135673524,7.40623363005508,7.37804494041792,0,2.82483166997221,0.638002319463839,0,0,0,0,0,0,0,0,0,0,2.10998064528027,0,0,0,5.97157158647103,7.25352028927381,5.49927130440263,0,0,0,22.0401704846814,4.01288823649394,28.1117334870407,0,0,0,29.1992458108549,18.1486074072996,31.5254944479405,9.92029300167261,5.71228993775072,0.622129148383483,2.65861549082874,1.323967823502,3.45326210247948,7.16834578637753,1.42304773014896,0,0,0,0,27.7815402504828,0,0,0,0,7.66213230258513,22.0640316728751,21.24218963337,0,0,40.202355431983,0,0,10.6726497369676,0,9.79814836647921,0,32.0882646001874,0,0,0.707082103850386,0,0,0,0,28.8201738580699,20.261996076015,2.55493176133945,0,0.525774708558629,14.8019672674295,14.4371067127361,6.46085722119133,12.3800980309374,13.7352335403703,8.48051538279116,3.22480667936286,0,0,0,0,0,0,0,34.9901063516093,29.2837323139888,14.3070302133867,13.7539436597234,10.8014487887588,0.899895566206002,41.7853055461293,46.5949099567049,6.03782437678679,9.69310199780138,9.12709833548967,0,3.94432146532259,0,5.00286728461357,9.93137955548147,0,0,0,0.326587360109409,0,0.082092520749339,0,0.79318464064088,1.17241786942466,1.32506888912221,45.1197517701811,31.6035918165029,5.8169524880672,0,2.77647272676006,2.98688179689365,15.7410841031934,20.8389729161019,0,0,0,2.1760712134779,2.2562090462043,3.06345576763462,1.63936315354902,1.72759505875258,38.1009317385804,43.6854028349028,40.1862887567865,22.3629586319128,27.5104047811394,33.035286364816,8.02422082630139,0,0,0,0,24.8217500077647,22.3178384060671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0.214821114084977,0,0,0,0.343395705182793,0,0,0,0.214441591374926,1.04397716786085,0.226705925512272,1.85217979459067,0,0,0,7.89422578483346,0,0,0,0,0,0,35.94719339945,0.779441235357554,0.132864840313363,2.12635012532597,0,0.983091635014877,0,0.999936979274649,0,0,0,0,0.139879507719444,0.622077260032973,24.5557192903011,9.91988264849473,0,34.0734071159083,0,0,0,0,0,0,16.0114149657094,0,0,37.9594720320076,52.4277332404664,33.8423781201161,43.8949019475216,38.0628261294794,38.5205896225694,44.0828512574953,58.5354623062533,0,0,0,0,0,0,0,16.0950102667411,0,21.1008783032935,0,5.89578903036348,0,40.6576259402736,40.6160611279201,41.9574196897404,40.9031975750699,31.1775641140385,12.061670870858,17.3673912436253,5.80375106386748,0,70.7126423359339,52.4602606661365,51.5920763601137,58.5091831772835,0.443511850813194,4.37889152711961,0,41.1216884509832,34.004523931993,0.709163045303809,0,17.5039597056646,45.5635210756406,0,9.13158720509496,0,9.07728206985395,27.2325633313061,15.9593747850054,0,0,0,0.828864656652147,2.7314956335032,1.38251932362818,19.3602311469125,0,0,36.4112863164199,0.68732060563215,0,0,0,0,0,11.6537190693821,5.2358031496686,0,5.82853191670967,15.2060651250369,0,12.3676894408671,2.14597555874024,10.6642301243066,36.6839709867017,3.08696632431779,3.49695296806332,0,21.5730523143437,18.1470941268252,34.9429071464603,21.6843872238773,25.359343655004,0,7.14277776646887,1.93373663920732,16.7901141953881,0,0,7.78341256884932,8.76403665895821,36.6983426723633,25.2277666346554,1.41994405973866,31.888008899539,33.1626524658687,16.3998320559774,0,0,0,18.2941316010864,4.04282616265674,0.886889507080059,8.77103935781043,9.08539177902906,19.0222442037129,4.51273570726275,10.457460354117,21.4371304124943,38.9709636545626,25.8582489654738,21.5366321719991,14.2838658878244,2.00225620491619,2.29676442894674,0,22.4674468721922,34.5620393118555,5.660635445321,3.08009970976753,13.4704106029175,7.81772038780172,5.65522606128223,0,0,0,0,4.69281884806909,14.3022489693954,5.2896503181046,10.6521083869682,13.8878917577808,12.5021711998261 | |||
|short_description=p1@RIC3 | |||
}} |
Latest revision as of 17:31, 24 September 2015
Short description: | p1@RIC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RIC3_5end |
Coexpression cluster: | C652_cerebellum_occipital_pineal_pituitary_medial_parietal_amygdala |
Association with transcript: | 0bp_to_ENST00000309737, ENST00000335425, ENST00000419822, ENST00000425599, ENST00000526962, ENST00000528463, ENST00000531450, ENST00000539720, ENST00000543346, NM_001135109, NM_001206671, NM_001206672, NM_024557, NR_045405, uc001mgc.2, uc001mgd.2, uc001mge.2, uc001mgf.3, uc009yfm.2, uc009yfn.2, uc010rbl.1, uc010rbm.1_5end |
EntrezGene: | RIC3 |
HGNC: | 30338 |
UniProt: | Q7Z5B4B0B1U0E9PNI0E9PKX8E9PK46F5GZ89B7Z1U4B7Z3Z0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.27e-10 | 52 |
lymphocyte | 3.54e-10 | 53 |
common lymphoid progenitor | 3.54e-10 | 53 |
mature alpha-beta T cell | 4.28e-10 | 18 |
alpha-beta T cell | 4.28e-10 | 18 |
immature T cell | 4.28e-10 | 18 |
mature T cell | 4.28e-10 | 18 |
immature alpha-beta T cell | 4.28e-10 | 18 |
B cell | 2.43e-07 | 14 |
CD8-positive, alpha-beta T cell | 2.85e-07 | 11 |