FFCP PHASE1:Hg19::chr1:113246314..113246331,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=669 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-39bp_to_ENST00000473074_5end | |||
|cluster_id=chr1:113246314..113246331,- | |||
|description=CAGE_peak_6_at_RHOC_5end | |||
|id=chr1:113246314..113246331,- | |||
|ontology_enrichment_celltype=CL:0000222!2.90e-24!119;CL:0000220!1.30e-20!246;CL:0002321!8.67e-20!248;CL:0000055!1.53e-15!180;CL:0000144!8.84e-14!625;CL:0002371!1.88e-13!591;CL:0000183!2.82e-13!59;CL:0000680!6.71e-13!57;CL:0000056!6.71e-13!57;CL:0000355!6.71e-13!57;CL:0000548!1.71e-12!679;CL:0000004!1.71e-12!679;CL:0000255!1.71e-12!679;CL:0000187!3.03e-12!54;CL:0000192!3.86e-12!42;CL:0000514!3.86e-12!42;CL:0000012!1.03e-11!682;CL:0000393!3.96e-11!60;CL:0000211!3.96e-11!60;CL:0000359!4.70e-11!32;CL:0000213!3.25e-10!57;CL:0000215!3.25e-10!57;CL:0002078!4.81e-09!44;CL:0000057!1.97e-08!75;CL:0000115!6.52e-08!35;CL:0000066!1.42e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.43e-11;32!CL:0000192;1.26e-08;43!CL:0000115;1.78e-07;36!CL:0002078;2.49e-07;45!CL:0000187;3.60e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.08e-24,121;CL:0002321,2.54e-20,250;CL:0000680,6.23e-13,58;CL:0000056,6.23e-13,58;CL:0000355,6.23e-13,58;CL:0000192,1.82e-12,43;CL:0000514,1.82e-12,43;CL:0000187,2.89e-12,55;CL:0000359,2.40e-11,32;CL:0000213,4.35e-10,58;CL:0000215,4.35e-10,58;CL:0002078,7.13e-10,45;CL:0000393,7.32e-10,61;CL:0000211,7.32e-10,61;CL:0000115,6.77e-09,36;CL:0000057,2.85e-07,76 | |||
|ontology_enrichment_development_v019=CL:0000514;1.26e-08;43!CL:0000222;5.46e-07;121!CL:0000355;7.66e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!4.86e-17!79;UBERON:0007798!4.86e-17!79;UBERON:0004872!5.65e-17!84;UBERON:0005256!7.80e-17!143;UBERON:0003914!1.25e-16!118;UBERON:0000055!1.37e-14!69;UBERON:0001981!2.61e-14!60;UBERON:0007500!2.61e-14!60;UBERON:0004537!2.61e-14!60;UBERON:0006965!2.61e-14!60;UBERON:0000914!3.64e-14!83;UBERON:0002329!3.64e-14!83;UBERON:0003077!3.64e-14!83;UBERON:0003059!3.64e-14!83;UBERON:0007282!3.64e-14!83;UBERON:0009618!3.64e-14!83;UBERON:0007285!3.64e-14!83;UBERON:0000490!2.51e-13!138;UBERON:0000486!3.08e-13!82;UBERON:0004290!3.09e-13!70;UBERON:0001637!3.84e-13!42;UBERON:0003509!3.84e-13!42;UBERON:0004572!3.84e-13!42;UBERON:0002100!1.83e-12!216;UBERON:0001009!4.20e-12!113;UBERON:0004535!5.73e-12!110;UBERON:0001134!3.37e-11!61;UBERON:0002036!3.37e-11!61;UBERON:0003082!3.37e-11!61;UBERON:0002385!5.17e-11!63;UBERON:0001015!5.17e-11!63;UBERON:0000383!5.17e-11!63;UBERON:0004573!1.60e-09!33;UBERON:0004571!1.60e-09!33;UBERON:0000119!1.46e-08!312;UBERON:0000483!2.14e-08!309;UBERON:0000468!3.92e-08!659;UBERON:0000926!4.24e-08!448;UBERON:0004120!4.24e-08!448;UBERON:0006603!4.24e-08!448;UBERON:0000475!1.33e-07!365;UBERON:0000477!2.39e-07!286;UBERON:0000480!3.70e-07!626;UBERON:0000467!3.80e-07!625;UBERON:0003104!7.96e-07!238;UBERON:0009142!7.96e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.44e-10;42!UBERON:0003509;3.44e-10;42!UBERON:0004572;3.44e-10;42!UBERON:0007500;1.14e-08;56!UBERON:0001981;1.14e-08;56!UBERON:0004537;1.14e-08;56!UBERON:0003914;1.41e-08;74!UBERON:0004573;1.45e-08;33!UBERON:0004571;1.45e-08;33!UBERON:0002049;2.53e-07;75!UBERON:0007798;2.53e-07;75!UBERON:0000055;3.42e-07;65!UBERON:0000353;6.16e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,2.90e-18,83;UBERON:0007503,6.44e-18,78;UBERON:0003914,1.26e-16,117;UBERON:0002049,2.66e-15,78;UBERON:0007798,2.66e-15,78;UBERON:0007500,1.71e-14,59;UBERON:0001981,1.71e-14,59;UBERON:0004537,1.71e-14,59;UBERON:0006965,1.71e-14,59;UBERON:0000490,1.85e-14,148;UBERON:0002329,2.27e-14,71;UBERON:0003059,2.27e-14,71;UBERON:0007282,2.27e-14,71;UBERON:0004290,2.27e-14,71;UBERON:0009618,2.27e-14,71;UBERON:0007524,2.88e-14,73;UBERON:0001637,4.33e-14,42;UBERON:0003509,4.33e-14,42;UBERON:0004572,4.33e-14,42;UBERON:0003077,5.99e-14,72;UBERON:0007285,5.99e-14,72;UBERON:0000055,6.16e-14,68;UBERON:0000486,7.75e-14,83;UBERON:0005256,3.46e-13,122;UBERON:0004535,4.82e-13,109;UBERON:0001009,7.06e-13,112;UBERON:0001134,2.98e-11,62;UBERON:0002036,2.98e-11,62;UBERON:0003082,2.98e-11,62;UBERON:0003104,6.43e-11,160;UBERON:0009142,6.43e-11,160;UBERON:0000926,7.63e-11,315;UBERON:0004120,7.63e-11,315;UBERON:0006603,7.63e-11,315;UBERON:0002385,1.67e-10,64;UBERON:0001015,1.67e-10,64;UBERON:0000383,1.67e-10,64;UBERON:0000483,8.07e-10,306;UBERON:0000119,8.39e-10,309;UBERON:0004573,1.12e-09,33;UBERON:0004571,1.12e-09,33;UBERON:0002100,3.32e-08,199;UBERON:0000353,6.25e-07,15;UBERON:0006555,7.79e-07,16;UBERON:0004819,7.79e-07,16 | |||
|phase1_expression=0.908391896352783,4.28201047781966,0.986680828671798,4.00293193412522,1.78784437770915,3.48935409640147,2.53299878168311,0.631719873426831,0.783556884599516,0,4.88460817580699,1.31064823278103,3.16520373874144,0.618831764800233,1.32558950291166,11.4295274896802,3.01347264011988,5.84248072309899,3.90346239032406,0.61560529038394,3.26401105990805,0.626909442956176,0.286235987131057,1.91624195102038,1.25542639594803,0.382067028739756,0.410502947249729,0.314843125254717,0.393364276848904,0,0,5.51652734687356,4.2168828628955,4.80680213216824,0,0,0,0,0.200544447470142,0,0,0,0.257575567634187,0,0.377875943688809,0.485168122375632,0,0,0,0.28769239232215,0,0.945928919554341,0,0,0,0.941211697713023,0,0,0,0,0,0.329851300186716,0.398927315243264,0.426224750532694,0.290209238628584,0,0,0.502497330513487,0,0.217188844705117,0.605399502633369,0,0.316462387440884,3.38008458099107,0.637812899895131,1.04829322754188,0,0,0,1.71007646244749,1.9891667719909,1.46131323011707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0.25618263945135,0.260118695119756,0.328875809207352,0.552700035571697,0.289803085735052,0,0,0,0.226618685395132,0,0,0.253019692019503,0.318565414324097,0,0,0,0,0,0.473554504088034,0,0,0.267440195783507,0.144824403882799,2.43806866313962,0,0.383587685530591,0.722878304769133,1.00267582127178,1.30361867064741,0,0.973269740605272,0.661743720148475,3.76939975686359,1.75669571386252,0.261958150995425,0,0.741568885568859,0.324547393654683,0.174129737299267,1.32957960518865,0.238490624305342,0,0,0.79504962946682,2.58070378531837,1.73570250803797,1.13061588384802,2.09749718104953,5.77747888074142,2.71693456497854,0,1.77883131343355,0.33472061276467,2.01414658554573,2.28081631715554,3.66093086322254,0.735326160691737,13.7724131139899,0.982297011124877,0.44905874525234,0.900891843866578,1.53316637465883,1.89853131913626,2.01521918323448,0,0,0.436094052142534,1.98788780678127,1.77282716330412,0.132409180813219,0.286836620748814,1.41867352879343,3.92474320099615,2.1349799145941,3.20667812942308,0,2.42479209725439,2.28846664358842,0.605429710579726,2.30470369792,0.468642863667593,2.18512053781224,0,1.49448680551801,1.996386476944,1.61872944368132,1.12360645361799,0.816616685019573,2.57952066354713,0.723280468230358,1.18800285728205,6.67620709052104,0.910161361938026,0.718618141816238,0.168336113954066,1.50142223846357,0,2.19488810440419,4.90380473278431,1.35214253015937,1.47461838108027,1.25572744982203,1.2813443329114,0.847727604638247,1.20036438433761,1.23663035086127,1.28820270022815,0.744467425326359,0,1.75386609290158,0,0.644349290496095,1.45481451136931,1.42003837006646,2.21654616100809,1.3564847384839,1.35282597214308,0.272746120590835,1.14721838155602,0,0,0.116193942869518,0.414644220061482,0.252320850875628,0.72995471815166,1.56449532329816,5.78916844373597,5.52539685409922,2.3218396401599,4.33127689001751,0.828147600278907,1.01150814046861,0.964044119533928,0.772057809126758,0.435758888184812,0,0.269662616320329,0.196221465125346,0.769494313892781,2.95262181849859,8.41450642820675,0.8231480226628,1.47008711385542,1.26755034821831,0,0.590789906681404,0.882926198829301,0.368965315629341,0.343135620597051,0.98775256867763,3.37205259772859,0.703702806881416,0.462942225792648,0.325808305310325,1.03993478527958,1.44331342025273,0.34779121492523,0.587043471179108,1.44366447761074,3.24089858803628,1.52203321787679,0.790204397959275,0.858486162094873,0.246217006087397,0.234004265139238,0.297262324577456,1.87467667973554,1.34385702559088,0.283550194484773,0.179117045405697,1.45316969256981,1.15014803749563,0,0,0,0,0,0.190493682876507,0,0,0,0.514137463516618,0.901029173531752,0.285826432630578,0.336393253036082,1.74384027533312,0.4400297149257,0.258543431515556,0,5.071816515336,1.32969058292435,0,0.771622122786426,0,3.19706614819319,0.714889968290738,0.542621605391443,0,0.65147236858747,0,2.37585561880029,1.50719688529793,4.35766729300147,2.99918973546171,0,0,0,0.958499421966331,1.14861935834114,0,2.02693829334611,4.72595541865882,0.358121926479791,0.112085143993527,0,0.646882724578552,0.128343036279748,0.254094624222463,0,0.773288812777695,0.167516265334349,0,0,0,0,0.49076596687656,3.50119364741774,1.08506009479894,2.49565033836969,4.28229573113188,1.26161932027148,1.63997980989798,0.902838299183157,9.09630016223939,1.03473071292505,0,1.65932251687533,1.99832313276591,0.391602314925481,1.71571711905428,0,0.215714200818617,0.106727557803444,2.42502057157008,6.65741758041988,7.86214762657169,1.48864684691266,0.153461973288062,3.36792113319688,0.896974044789907,1.02341449813341,0.64341568457443,2.96836132889982,2.62156479464514,2.13074070375753,0.574890092096664,3.63478100428535,4.29978400301849,0.241718899183244,6.21570057940183,0.552485933615378,0.459257792658427,3.27764102412091,3.01586154406675,0,1.23224539367064,1.56869953835371,1.46139224653261,0.844413031143006,2.27466768141793,2.72149928442425,2.15915916102139,3.08454505380579,1.35473218771926,1.50506932156456,1.01950509218015,2.49322802678617,1.79099803777743,0,0,0,0.656029291399411,0.325378394664303,0.103041011647722,1.64825036673018,0.577566499444116,1.14853107599234,1.95018073810956,4.82051789532479,0.870036464629098,2.00263202249038,1.68854042198743,2.06754858726796,0.644521469209642,2.0302337147992,1.53407929348982,0.356128142586949,2.14870389969272,2.69066094311149,0,0.809262246844399,7.43752878875657,0.31481234683064,0,0.616067160352178,1.59691809095107,1.73986598415015,1.11194531462352,6.01124524316363,2.97726695487734,0.949138274156178,2.09693213316207,1.02359116524534,0.855877976067841,0.95460974377781,10.9892809627892,1.43897966066652,3.84351841630477,2.94531005864216,2.02182481573316,7.92551605865041,7.58265221230166,0.48763373908959,3.89941583410055,9.50851320810799,0.272999822815972,2.12108147930569,6.78048699721457,0.551365343546124,9.95158462861829,5.69986150829892,1.73632660280006,0,0.608731130888112,4.957175969596,5.35221644811259,0.430234056612155,0.589494246078727,2.1400263088875,3.54761064070598,1.26664581178598,1.64647446479951,0.75894634753143,2.0996083214699,0.192444225451024,0.670302275535787,4.3556393944529,0,0.86101074534246,1.68471475667626,1.33029046061003,0.459446800413919,0,0,0.569647187174163,0,0,0,0,0,0.534120355637366,0.962479855263359,0.490080431962063,0,0,0,0,0,0,0.211673582723883,0,0,0.228234679033192,0,0,0.50787533340481,0,0,0,0.687010689511529,0,0,0.166849141711909,0,0.556812347790485,0,0.270455678475983,0,0,0.37428108081644,1.02555725490326,0,0.334330152832435,0.568272293612826,1.43246690842614,0.296964680832639,1.22864280839693,0,0.281338832821026,0.111308705022906,0,0.211125408127993,0.597743964753209,1.10513566212459,0.251932747854276,0.20453736500431,0,2.17727711363265,0.359473404589307,1.07412704805365,0,0.789147245095469,0,0,0,0,1.99613798001194,1.30213880542617,0.174919999992391,0.724999575434793,0,0.254253650292766,0,0,0,0.173624994933292,0,0.241192877250816,0,0,0,1.09692698576986,0,0.41827123283581,0.153900517007594,0.569710279235006,0,0.269272933229316,0.217294743844016,0.957003479195758,0.915975934018623,4.79731298416771,0,0.31396051279005,0,0.902382642468723,0.784250137270958,0.503464760927528,0,0,2.53197677433632,0.489698424477443,0,0,0,0.707660516026713,0,0,0.123563938946503,0,0,0.802577647298789,0.234264445725339,0.547364367646998,0,0,0.789168805698781,0,0.30607276163049,0.063186579628488,0.150323419414493,0.207376382794494,0,0,0.313932918407225,0,0.284609546029793,1.24807205711825,3.99187398170801,0.195984794828755,0,2.79562669187248,1.20390222730132,0.580537987734511,0.146178634172371,0.492692742319255,0.484945082442097,0.0882561266915003,0.90392296312213,0,0.993573058514948,0.0633107959558787,0.195551382734803,0.320635281006135,1.70762395791482,2.59752492456769,0,0,0.514784993585894,0,0.248505071130865,0.235694034616795,0.135904206073614,0.523014231561666,0.305994652908965,0,0.600420288709789,0.410716136675979,0,3.0083580899397,0,0,0.458320848023367,0,0.599037001496973,2.14613024068285,0.223171457441873,0.0671834724867263,0.360299883542404,1.16495949527454,0.315132729228895,0.412079291905832,0.202210631562555,0.196854963029498,0.169346664131569,0,0,0.643012593860077,0.412618309791701,0.83088067605837,0.449947783103001,0.77380195455795,0,0.670869375198532,0.788057072991982,0.209818352539992,0.105600336519406,0.537862017998534,0,0.714695326373367,2.64836788146173,0,13.5749900438428,7.77799342081141,7.83809664262582,1.19730191562487,0.164185041498678,0.511164065356265,0.226624183040251,0.293104467356165,0,0.129282956361551,0.26446520348538,0,0,0.533937062838473,0,0.414239055347196,0.992332043623902,0.395223263795889,0,0,0,0.2506898940227,0,0.327872630709804,0,0,0.610131324509816,0.1251909307065,0.573409195690071,0.332787154610557,0,0,0,0.151649117541648,0.285465333544967,5.17584803335978,0,0,1.94031243752936,0.467426619694449,3.32883516901568,1.7046270474758,0.754703705257725,0,1.37304041038154,1.96600200892211,1.39893480524502,1.18284119991707,1.59296767163702,0.899606224327209,2.01841843939137,2.48823724704513,0.53168342911599,2.08698024724694,1.05180326298053,7.61610424337591,2.03435366602331,1.09109195521536,0.966695013382396,0.464033759878494,1.19428766609585,9.20063858725253,0.686791410365586,1.34699795506368,1.26184898228651,0.385239660814607,0.643324774124777,2.87093721161733,0.453411851024545,1.85217979459067,0.97894681802587,1.07453304648892,1.23520578864389,1.53498834705095,0.353378291891762,1.15748422962549,0.506827321959218,1.02496607435179,0,0.911579868532147,0.138258436151731,0.584580926518165,0.664324201566815,0.817826971279221,3.27609848846413,2.21195617878347,0,0.19998739585493,0.106691729694141,0.172214979660816,0.567515953566836,0.368211900503681,0.419638523158333,0,0,0,0,0,0,0.212574920101683,0.247871528518004,0,1.27201740261367,0,0,1.41070377476274,6.7374005017704,0,0,0.159633859057151,0,0.504143392443436,0.0691572524642179,0.322951291263702,0,0.294443155503077,0,3.11828617486854,0.231051332300676,1.52552838186867,0,0,0.300841313397029,0.80682027481408,0,0,1.63771917510097,0,0.0675375846183947,0,0.206686796501184,0,0.546974809018219,0,0.992422356778588,0.351742488719241,0.127762427639595,0,0,0,0,0.266107110487916,0.230467975111559,1.37190407549935,0,0,0.236387681767936,0.111231401892069,0.078493092850514,0,0,0,0.431855182437243,0.9555033757741,0.214429632529969,0,0,0,0.801711364730253,1.03608082081518,2.0486217251274,0,0,0,0.596493833314104,1.27016115057279,1.8328549483524,3.1020638566432,3.82215575590973,0.111855431797792,0,0.487671699929078,0,0.102662806856247,0,1.45713297917742,0.467878926924211,0.198950775161368,0.356760272332706,0,0,0.150962843566674,0.463044948647668,0,0,0.490296643507811,0,0,0,2.113278637917,1.52934403219035,0.657887425858975,0.257831551894309,0,0,1.41157948686277,0.0802413666891683,0,0,0.286679166302903,0.157771562193185,0.0679914901909147,0.436350690340377,1.5870805215462,2.97596014533401,0.462175628631418,2.59575937274273,0.126166424835079,0.109265571963696,0.253397002022874,0,0.534434810531121,0.36757959813938,1.0028301571695,0.303114792872958,0.535928260312357,0,0.103432995861895,1.49263787330687,0.23806443146374,0.0645889098360061,0,0.224263725161227,0.12729431655633,0.404234377916439,0.870866991587845,1.36893320434112,0,0.0717222053926763,0.332660356546013,0.0814032686109745,0.106727345877715,0,0.359300808426348,0,0.122241444182866,1.22068853494722,0.665756774185513,1.40891655513718,1.9234109538194 | |||
|short_description=p6@RHOC | |||
}} |
Latest revision as of 05:04, 16 September 2015
Short description: | p6@RHOC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RHOC_5end |
Coexpression cluster: | NA |
Association with transcript: | -39bp_to_ENST00000473074_5end |
EntrezGene: | RHOC |
HGNC: | 669 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.08e-24 | 121 |
embryonic cell | 2.54e-20 | 250 |
muscle precursor cell | 6.23e-13 | 58 |
myoblast | 6.23e-13 | 58 |
multi-potent skeletal muscle stem cell | 6.23e-13 | 58 |
smooth muscle cell | 1.82e-12 | 43 |
smooth muscle myoblast | 1.82e-12 | 43 |
muscle cell | 2.89e-12 | 55 |
vascular associated smooth muscle cell | 2.40e-11 | 32 |
lining cell | 4.35e-10 | 58 |
barrier cell | 4.35e-10 | 58 |
meso-epithelial cell | 7.13e-10 | 45 |
electrically responsive cell | 7.32e-10 | 61 |
electrically active cell | 7.32e-10 | 61 |
endothelial cell | 6.77e-09 | 36 |
fibroblast | 2.85e-07 | 76 |