FFCP PHASE1:Mm9::chr18:36124663..36124677,+: Difference between revisions
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{{FFCP|EntrezGene=74002|HGNC=|MCL_coexpression_id=22|UniProt=Q6P1I6|association_with_transcript=174bp_to_ENSMUST00000115716,NM_028707,uc008ena.1,uc008enb.1,uc008enc.1,uc008end.1,uc012bbk.1_5end|description=CAGE_peak_3_at_Psd2_5end|id=chr18:36124663..36124677,+|ontology_enrichment_celltype=CL:0000117!1.29e-21!23;CL:0000337!1.29e-21!23;CL:0002319!2.44e-16!43;CL:0000221!1.10e-15!44;CL:0000133!1.10e-15!44;CL:0000540!1.98e-15!33;CL:0000047!1.98e-15!33;CL:0000031!1.98e-15!33;CL:0000404!1.98e-15!33;CL:0000055!2.29e-12!50;CL:0000393!1.62e-11!39;CL:0000211!1.62e-11!39;CL:0002609!3.63e-07!6|ontology_enrichment_celltype_v019_2=CL:0000117,2.32e-44,23;CL:0000337,2.32e-44,23;CL:0000540,3.11e-29,33;CL:0000047,3.11e-29,33;CL:0000031,3.11e-29,33;CL:0000404,3.11e-29,33;CL:0000393,6.95e-24,39;CL:0000211,6.95e-24,39;CL:0002319,1.84e-23,43;CL:0000221,8.48e-23,44;CL:0000133,8.48e-23,44;CL:0002609,1.97e-14,6;CL:0002321,3.17e-12,70;CL:0002613,1.81e-08,3;CL:0000120,4.32e-08,3;CL:0002608,4.32e-08,3;CL:0002612,1.30e-07,3;CL:0000723,3.34e-07,91;CL:0000048,3.34e-07,91;CL:0002614,6.47e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.56e-30!73;UBERON:0005743!1.56e-30!73;UBERON:0000073!3.91e-29!75;UBERON:0001016!3.91e-29!75;UBERON:0001049!6.99e-27!52;UBERON:0005068!6.99e-27!52;UBERON:0006241!6.99e-27!52;UBERON:0007135!6.99e-27!52;UBERON:0000033!4.80e-26!63;UBERON:0002346!9.65e-26!71;UBERON:0003075!9.65e-26!71;UBERON:0007284!9.65e-26!71;UBERON:0000955!3.78e-25!50;UBERON:0006238!3.78e-25!50;UBERON:0004121!5.43e-25!102;UBERON:0000924!5.43e-25!102;UBERON:0006601!5.43e-25!102;UBERON:0002616!2.10e-24!49;UBERON:0003056!1.23e-22!49;UBERON:0002020!1.27e-22!34;UBERON:0003080!6.40e-19!40;UBERON:0002791!1.50e-18!29;UBERON:0003528!1.50e-18!29;UBERON:0001893!1.50e-18!29;UBERON:0002780!5.55e-18!39;UBERON:0001890!5.55e-18!39;UBERON:0006240!5.55e-18!39;UBERON:0007811!3.18e-14!86;UBERON:0000153!1.37e-11!94;UBERON:0000956!1.39e-11!21;UBERON:0001869!1.39e-11!21;UBERON:0000203!1.39e-11!21;UBERON:0003076!1.62e-08!12;UBERON:0003057!1.62e-08!12;UBERON:0002420!1.69e-08!8;UBERON:0007245!1.69e-08!8;UBERON:0010009!1.69e-08!8;UBERON:0010011!1.69e-08!8;UBERON:0000454!1.69e-08!8;UBERON:0002619!2.87e-08!17;UBERON:0001954!6.14e-07!7;UBERON:0003022!6.14e-07!7;UBERON:0002421!6.14e-07!7;UBERON:0000349!6.14e-07!7;UBERON:0002600!6.14e-07!7|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.87e-36,54;UBERON:0001017,1.01e-33,73;UBERON:0001016,1.29e-32,75;UBERON:0001049,6.48e-31,52;UBERON:0005068,6.48e-31,52;UBERON:0006241,6.48e-31,52;UBERON:0007135,6.48e-31,52;UBERON:0002020,1.84e-30,34;UBERON:0002616,1.03e-25,46;UBERON:0000955,4.89e-25,47;UBERON:0006238,4.89e-25,47;UBERON:0003528,2.50e-24,29;UBERON:0002791,2.50e-24,29;UBERON:0001893,2.50e-24,29;UBERON:0004121,4.16e-24,95;UBERON:0000924,4.16e-24,95;UBERON:0006601,4.16e-24,95;UBERON:0002346,7.96e-24,64;UBERON:0003075,7.96e-24,64;UBERON:0007284,7.96e-24,64;UBERON:0003080,6.04e-23,40;UBERON:0002780,3.40e-21,39;UBERON:0001890,3.40e-21,39;UBERON:0006240,3.40e-21,39;UBERON:0010371,4.87e-20,73;UBERON:0003056,9.99e-18,49;UBERON:0010314,1.75e-14,92;UBERON:0002420,6.03e-14,8;UBERON:0007245,6.03e-14,8;UBERON:0010009,6.03e-14,8;UBERON:0010011,6.03e-14,8;UBERON:0000454,6.03e-14,8;UBERON:0000956,6.65e-13,21;UBERON:0001869,6.65e-13,21;UBERON:0000203,6.65e-13,21;UBERON:0000025,2.24e-10,114;UBERON:0004111,2.96e-09,122;UBERON:0002950,4.06e-09,4;UBERON:0001891,4.06e-09,4;UBERON:0009616,4.06e-09,4;UBERON:0010286,4.06e-09,4;UBERON:0000369,1.20e-08,5;UBERON:0002435,1.20e-08,5;UBERON:0000204,1.20e-08,5;UBERON:0010082,1.20e-08,5;UBERON:0011216,1.63e-08,194;UBERON:0003076,2.79e-08,12;UBERON:0003057,2.79e-08,12;UBERON:0002257,1.30e-07,3;UBERON:0001948,2.42e-07,5;UBERON:0002315,2.42e-07,5;UBERON:0002619,5.10e-07,17;UBERON:0002038,6.47e-07,3;UBERON:0009663,6.47e-07,3;UBERON:0009661,6.47e-07,3;UBERON:0000125,6.47e-07,3;UBERON:0002308,6.47e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0.878744730937887,0.777719596297134,0.419959264876088,2.87505128729943,0,0,0,0,0,0,3.23706337375356,3.70293685490423,2.53532561402472,0,0,0,0,0,0.898800331555214,0,2.48855069540346,2.70011876663381,3.78584930432488,0.571301968807607,1.32521124570968,3.1847607795888,2.68367318851062,3.67687514644008,1.10115880999389,1.40456071893706,1.84327839907492,4.48413378282659,3.65950574409639,3.64639359389732,1.95428099300967,1.12552522006336,2.44477196442896,2.35702868378934,2.84743361598206,2.60959224155421,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,1.86391761218122,2.92780797011547,1.8850203613211,0,0,0,0,3.59497534571574,0.915001205637253,6.78533501409468,1.56441888173049,0.767146371990992,2.0778804455956,3.0825839982874,0,0,0,0.210441855886474,0.390361328888111,0.229902104433473,0.360124259610698,0.30140963567143,0.340182495756639,0.2562274405697,0.562210347358373,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,2.26390147234426,0,0,0,0,0.128867461322093,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0.963303539926752,2.22702204525186,0,0,0.315508219416257,0,0,0,0,0,0,0.292255857911312,0.395287777946524,0.963963949265421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0.214337035031592,0,0,0,0.608929898229199,0,0,0,0,0,0,0.119372344003136,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,1.03111909406213,1.37016503954128,0,1.35004500046361,0.45032120322422,0,1.55328093525546,0.207574695168353,0.399024873401031,0.341467211508268,0.486213434136588,0,0.735374033800057,0.44449345560323,0.618105171716683,0.320919209591815,1.01078884705519,0.50695859978048,0.754505365544305,0.280924522409647,0.640251524048693,0.631790158511746,1.42888107384922,0.695305955669133,1.35036454324594,0.824171801606613,0.294397840268795,0.685738504770831,0.177475806159338,0.953744759789284,0.145346416632329,0.282328141245992,0.507687647350059,0.182927972872773,0.263069711437843,0.407412341537585,0.561142271657738,0.474540072496697,0.689531376628944,0.409231043169689,0.309873682371932,0,2.24829520144151,0,0.429742108096597,0,0,0.231867835620421|short_description=p3@Psd2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=74002 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q6P1I6 | |||
|association_with_transcript=174bp_to_ENSMUST00000115716,NM_028707,uc008ena.1,uc008enb.1,uc008enc.1,uc008end.1,uc012bbk.1_5end | |||
|cluster_id=chr18:36124663..36124677,+ | |||
|description=CAGE_peak_3_at_Psd2_5end | |||
|id=chr18:36124663..36124677,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.29e-21!23;CL:0000337!1.29e-21!23;CL:0002319!2.44e-16!43;CL:0000221!1.10e-15!44;CL:0000133!1.10e-15!44;CL:0000540!1.98e-15!33;CL:0000047!1.98e-15!33;CL:0000031!1.98e-15!33;CL:0000404!1.98e-15!33;CL:0000055!2.29e-12!50;CL:0000393!1.62e-11!39;CL:0000211!1.62e-11!39;CL:0002609!3.63e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.32e-44,23;CL:0000337,2.32e-44,23;CL:0000540,3.11e-29,33;CL:0000047,3.11e-29,33;CL:0000031,3.11e-29,33;CL:0000404,3.11e-29,33;CL:0000393,6.95e-24,39;CL:0000211,6.95e-24,39;CL:0002319,1.84e-23,43;CL:0000221,8.48e-23,44;CL:0000133,8.48e-23,44;CL:0002609,1.97e-14,6;CL:0002321,3.17e-12,70;CL:0002613,1.81e-08,3;CL:0000120,4.32e-08,3;CL:0002608,4.32e-08,3;CL:0002612,1.30e-07,3;CL:0000723,3.34e-07,91;CL:0000048,3.34e-07,91;CL:0002614,6.47e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.56e-30!73;UBERON:0005743!1.56e-30!73;UBERON:0000073!3.91e-29!75;UBERON:0001016!3.91e-29!75;UBERON:0001049!6.99e-27!52;UBERON:0005068!6.99e-27!52;UBERON:0006241!6.99e-27!52;UBERON:0007135!6.99e-27!52;UBERON:0000033!4.80e-26!63;UBERON:0002346!9.65e-26!71;UBERON:0003075!9.65e-26!71;UBERON:0007284!9.65e-26!71;UBERON:0000955!3.78e-25!50;UBERON:0006238!3.78e-25!50;UBERON:0004121!5.43e-25!102;UBERON:0000924!5.43e-25!102;UBERON:0006601!5.43e-25!102;UBERON:0002616!2.10e-24!49;UBERON:0003056!1.23e-22!49;UBERON:0002020!1.27e-22!34;UBERON:0003080!6.40e-19!40;UBERON:0002791!1.50e-18!29;UBERON:0003528!1.50e-18!29;UBERON:0001893!1.50e-18!29;UBERON:0002780!5.55e-18!39;UBERON:0001890!5.55e-18!39;UBERON:0006240!5.55e-18!39;UBERON:0007811!3.18e-14!86;UBERON:0000153!1.37e-11!94;UBERON:0000956!1.39e-11!21;UBERON:0001869!1.39e-11!21;UBERON:0000203!1.39e-11!21;UBERON:0003076!1.62e-08!12;UBERON:0003057!1.62e-08!12;UBERON:0002420!1.69e-08!8;UBERON:0007245!1.69e-08!8;UBERON:0010009!1.69e-08!8;UBERON:0010011!1.69e-08!8;UBERON:0000454!1.69e-08!8;UBERON:0002619!2.87e-08!17;UBERON:0001954!6.14e-07!7;UBERON:0003022!6.14e-07!7;UBERON:0002421!6.14e-07!7;UBERON:0000349!6.14e-07!7;UBERON:0002600!6.14e-07!7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.87e-36,54;UBERON:0001017,1.01e-33,73;UBERON:0001016,1.29e-32,75;UBERON:0001049,6.48e-31,52;UBERON:0005068,6.48e-31,52;UBERON:0006241,6.48e-31,52;UBERON:0007135,6.48e-31,52;UBERON:0002020,1.84e-30,34;UBERON:0002616,1.03e-25,46;UBERON:0000955,4.89e-25,47;UBERON:0006238,4.89e-25,47;UBERON:0003528,2.50e-24,29;UBERON:0002791,2.50e-24,29;UBERON:0001893,2.50e-24,29;UBERON:0004121,4.16e-24,95;UBERON:0000924,4.16e-24,95;UBERON:0006601,4.16e-24,95;UBERON:0002346,7.96e-24,64;UBERON:0003075,7.96e-24,64;UBERON:0007284,7.96e-24,64;UBERON:0003080,6.04e-23,40;UBERON:0002780,3.40e-21,39;UBERON:0001890,3.40e-21,39;UBERON:0006240,3.40e-21,39;UBERON:0010371,4.87e-20,73;UBERON:0003056,9.99e-18,49;UBERON:0010314,1.75e-14,92;UBERON:0002420,6.03e-14,8;UBERON:0007245,6.03e-14,8;UBERON:0010009,6.03e-14,8;UBERON:0010011,6.03e-14,8;UBERON:0000454,6.03e-14,8;UBERON:0000956,6.65e-13,21;UBERON:0001869,6.65e-13,21;UBERON:0000203,6.65e-13,21;UBERON:0000025,2.24e-10,114;UBERON:0004111,2.96e-09,122;UBERON:0002950,4.06e-09,4;UBERON:0001891,4.06e-09,4;UBERON:0009616,4.06e-09,4;UBERON:0010286,4.06e-09,4;UBERON:0000369,1.20e-08,5;UBERON:0002435,1.20e-08,5;UBERON:0000204,1.20e-08,5;UBERON:0010082,1.20e-08,5;UBERON:0011216,1.63e-08,194;UBERON:0003076,2.79e-08,12;UBERON:0003057,2.79e-08,12;UBERON:0002257,1.30e-07,3;UBERON:0001948,2.42e-07,5;UBERON:0002315,2.42e-07,5;UBERON:0002619,5.10e-07,17;UBERON:0002038,6.47e-07,3;UBERON:0009663,6.47e-07,3;UBERON:0009661,6.47e-07,3;UBERON:0000125,6.47e-07,3;UBERON:0002308,6.47e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0.878744730937887,0.777719596297134,0.419959264876088,2.87505128729943,0,0,0,0,0,0,3.23706337375356,3.70293685490423,2.53532561402472,0,0,0,0,0,0.898800331555214,0,2.48855069540346,2.70011876663381,3.78584930432488,0.571301968807607,1.32521124570968,3.1847607795888,2.68367318851062,3.67687514644008,1.10115880999389,1.40456071893706,1.84327839907492,4.48413378282659,3.65950574409639,3.64639359389732,1.95428099300967,1.12552522006336,2.44477196442896,2.35702868378934,2.84743361598206,2.60959224155421,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,1.86391761218122,2.92780797011547,1.8850203613211,0,0,0,0,3.59497534571574,0.915001205637253,6.78533501409468,1.56441888173049,0.767146371990992,2.0778804455956,3.0825839982874,0,0,0,0.210441855886474,0.390361328888111,0.229902104433473,0.360124259610698,0.30140963567143,0.340182495756639,0.2562274405697,0.562210347358373,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,2.26390147234426,0,0,0,0,0.128867461322093,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0.963303539926752,2.22702204525186,0,0,0.315508219416257,0,0,0,0,0,0,0.292255857911312,0.395287777946524,0.963963949265421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0.214337035031592,0,0,0,0.608929898229199,0,0,0,0,0,0,0.119372344003136,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,1.03111909406213,1.37016503954128,0,1.35004500046361,0.45032120322422,0,1.55328093525546,0.207574695168353,0.399024873401031,0.341467211508268,0.486213434136588,0,0.735374033800057,0.44449345560323,0.618105171716683,0.320919209591815,1.01078884705519,0.50695859978048,0.754505365544305,0.280924522409647,0.640251524048693,0.631790158511746,1.42888107384922,0.695305955669133,1.35036454324594,0.824171801606613,0.294397840268795,0.685738504770831,0.177475806159338,0.953744759789284,0.145346416632329,0.282328141245992,0.507687647350059,0.182927972872773,0.263069711437843,0.407412341537585,0.561142271657738,0.474540072496697,0.689531376628944,0.409231043169689,0.309873682371932,0,2.24829520144151,0,0.429742108096597,0,0,0.231867835620421 | |||
|short_description=p3@Psd2 | |||
}} |
Latest revision as of 05:06, 27 September 2015
Short description: | p3@Psd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Psd2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 174bp_to_ENSMUST00000115716, NM_028707, uc008ena.1, uc008enb.1, uc008enc.1, uc008end.1, uc012bbk.1_5end |
EntrezGene: | Psd2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.32e-44 | 23 |
neuroblast (sensu Vertebrata) | 2.32e-44 | 23 |
neuron | 3.11e-29 | 33 |
neuronal stem cell | 3.11e-29 | 33 |
neuroblast | 3.11e-29 | 33 |
electrically signaling cell | 3.11e-29 | 33 |
electrically responsive cell | 6.95e-24 | 39 |
electrically active cell | 6.95e-24 | 39 |
neural cell | 1.84e-23 | 43 |
ectodermal cell | 8.48e-23 | 44 |
neurectodermal cell | 8.48e-23 | 44 |
neuron of cerebral cortex | 1.97e-14 | 6 |
embryonic cell | 3.17e-12 | 70 |
striatum neuron | 1.81e-08 | 3 |
granule cell | 4.32e-08 | 3 |
hippocampal neuron | 4.32e-08 | 3 |
neuron of the ventral spinal cord | 1.30e-07 | 3 |
somatic stem cell | 3.34e-07 | 91 |
multi fate stem cell | 3.34e-07 | 91 |
neuron of the substantia nigra | 6.47e-07 | 3 |