FFCP PHASE1:Hg19::chrX:50386616..50386637,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:50386616..50386637,-
|short_description=p3@SHROOM4
|description=CAGE_peak_3_at_SHROOM4_5end
|association_with_transcript=45bp_to_ENST00000460112,uc004dpf.1...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57477 | |EntrezGene=57477 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29215 | |HGNC=29215 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=45bp_to_ENST00000460112,uc004dpf.1_5end | |||
|cluster_id=chrX:50386616..50386637,- | |||
|coexpression_cluster_id=C2447 | |||
|description=CAGE_peak_3_at_SHROOM4_5end | |||
|id=chrX:50386616..50386637,- | |||
|ontology_enrichment_celltype=CL:0002139!3.62e-31!24;CL:0000115!1.07e-28!35;CL:0000071!2.52e-23!18;CL:0002546!2.52e-23!18;CL:0002078!8.70e-22!44;CL:0000213!2.40e-14!57;CL:0000215!2.40e-14!57;CL:1000413!1.45e-12!9;CL:0005020!2.21e-09!6;CL:0002138!2.21e-09!6;CL:0005022!2.21e-09!6;CL:0002543!2.30e-09!6;CL:0002544!4.12e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.22e-35;24!CL:0000115;2.74e-29;36!CL:0000071;1.98e-26;18!CL:0002078;2.11e-16;45!CL:1000413;4.52e-14;9!CL:0000213;2.79e-11;58!CL:0000215;2.79e-11;58!CL:0002138;1.79e-10;6!CL:0002543;1.81e-10;6!CL:0002544;3.78e-10;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.26e-35,24;CL:0000115,2.10e-34,36;CL:0000071,2.07e-26,18;CL:0002546,2.07e-26,18;CL:0002078,2.74e-25,45;CL:0000213,3.01e-17,58;CL:0000215,3.01e-17,58;CL:1000413,4.06e-14,9;CL:0005020,1.73e-10,6;CL:0002138,1.73e-10,6;CL:0005022,1.73e-10,6;CL:0002543,1.82e-10,6;CL:0002544,3.53e-10,6 | |||
|ontology_enrichment_development_v019=CL:0002546;1.98e-26;18!CL:0005022;1.79e-10;6!UBERON:0006601;3.54e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.48e-75!115;UBERON:0001049!1.28e-33!57;UBERON:0005068!1.28e-33!57;UBERON:0006241!1.28e-33!57;UBERON:0007135!1.28e-33!57;UBERON:0004111!6.94e-31!241;UBERON:0000025!2.93e-28!194;UBERON:0000477!5.04e-28!286;UBERON:0002616!4.35e-27!59;UBERON:0003080!3.62e-26!42;UBERON:0002346!6.96e-26!90;UBERON:0003075!1.56e-25!86;UBERON:0007284!1.56e-25!86;UBERON:0002780!3.88e-25!41;UBERON:0001890!3.88e-25!41;UBERON:0006240!3.88e-25!41;UBERON:0000955!1.86e-24!69;UBERON:0006238!1.86e-24!69;UBERON:0001017!4.44e-24!82;UBERON:0005743!1.66e-23!86;UBERON:0001986!2.52e-23!18;UBERON:0004638!2.52e-23!18;UBERON:0004852!2.52e-23!18;UBERON:0002020!1.23e-21!34;UBERON:0003528!1.23e-21!34;UBERON:0001893!2.01e-21!34;UBERON:0000073!1.04e-20!94;UBERON:0001016!1.04e-20!94;UBERON:0002791!1.08e-20!33;UBERON:0001869!6.28e-20!32;UBERON:0000487!7.60e-18!22;UBERON:0002619!5.09e-17!22;UBERON:0003056!1.05e-16!61;UBERON:0006914!2.54e-16!25;UBERON:0000483!1.11e-15!309;UBERON:0001950!2.02e-15!20;UBERON:0000119!2.97e-15!312;UBERON:0000153!1.63e-14!129;UBERON:0007811!1.63e-14!129;UBERON:0000956!2.67e-14!25;UBERON:0000203!2.67e-14!25;UBERON:0000033!5.81e-13!123;UBERON:0003915!1.45e-12!9;UBERON:0004700!1.45e-12!9;UBERON:0001917!1.45e-12!9;UBERON:0000468!6.62e-12!659;UBERON:0000055!6.86e-12!69;UBERON:0000924!3.79e-11!173;UBERON:0006601!3.79e-11!173;UBERON:0000467!6.56e-11!625;UBERON:0000480!7.97e-11!626;UBERON:0004121!1.08e-10!169;UBERON:0002049!9.97e-10!79;UBERON:0007798!9.97e-10!79;UBERON:0000064!1.14e-09!219;UBERON:0002308!4.21e-09!9;UBERON:0000125!4.21e-09!9;UBERON:0002420!1.15e-08!9;UBERON:0007245!1.15e-08!9;UBERON:0010009!1.15e-08!9;UBERON:0010011!1.15e-08!9;UBERON:0000454!1.15e-08!9;UBERON:0002298!1.48e-08!8;UBERON:0003076!1.50e-08!15;UBERON:0003057!1.50e-08!15;UBERON:0004872!1.84e-08!84;UBERON:0000922!1.87e-08!612;UBERON:0001981!1.94e-08!60;UBERON:0007500!1.94e-08!60;UBERON:0004537!1.94e-08!60;UBERON:0006965!1.94e-08!60;UBERON:0001009!2.53e-08!113;UBERON:0002465!2.95e-08!10;UBERON:0002050!4.64e-08!605;UBERON:0005423!4.64e-08!605;UBERON:0000923!1.05e-07!604;UBERON:0005291!1.05e-07!604;UBERON:0006598!1.05e-07!604;UBERON:0002532!1.05e-07!604;UBERON:0001871!1.17e-07!7;UBERON:0001638!1.29e-07!9;UBERON:0003920!1.29e-07!9;UBERON:0004582!1.29e-07!9;UBERON:0000481!2.25e-07!347;UBERON:0009663!2.79e-07!7;UBERON:0004535!6.36e-07!110;UBERON:0004732!9.06e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.98e-26;18!UBERON:0001986;1.98e-26;18!UBERON:0004852;1.98e-26;18!UBERON:0000487;1.88e-20;22!UBERON:0003528;2.39e-19;34!UBERON:0002020;2.39e-19;34!UBERON:0002791;2.92e-19;32!UBERON:0001893;3.25e-19;34!UBERON:0001869;3.41e-19;32!UBERON:0002780;6.49e-19;41!UBERON:0001890;6.49e-19;41!UBERON:0002619;2.14e-17;22!UBERON:0006914;3.01e-17;25!UBERON:0000073;4.54e-16;53!UBERON:0002616;4.54e-16;53!UBERON:0007023;1.25e-15;114!UBERON:0001950;1.26e-15;20!UBERON:0000956;1.02e-14;25!UBERON:0000203;1.02e-14;25!UBERON:0003915;4.52e-14;9!UBERON:0004700;4.52e-14;9!UBERON:0001917;4.52e-14;9!UBERON:0000955;4.61e-11;68!UBERON:0001017;6.40e-11;75!UBERON:0000490;8.64e-11;33!UBERON:0000125;3.28e-10;9!UBERON:0002308;3.28e-10;9!UBERON:0002465;2.03e-09;10!UBERON:0001016;8.30e-09;83!UBERON:0001638;1.27e-08;9!UBERON:0003920;1.27e-08;9!UBERON:0004582;1.27e-08;9!UBERON:0009663;3.38e-08;7!UBERON:0002420;5.33e-08;9!UBERON:0007245;5.33e-08;9!UBERON:0010009;5.33e-08;9!UBERON:0010011;5.33e-08;9!UBERON:0000454;5.33e-08;9!UBERON:0000055;1.36e-07;65!UBERON:0001473;1.56e-07;8!UBERON:0004536;1.56e-07;8!UBERON:0006558;1.56e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.57e-60,114;UBERON:0001049,8.40e-33,56;UBERON:0005068,8.40e-33,56;UBERON:0006241,8.40e-33,56;UBERON:0007135,8.40e-33,56;UBERON:0004111,4.07e-31,240;UBERON:0000073,7.61e-30,53;UBERON:0002616,7.61e-30,53;UBERON:0000025,5.45e-29,192;UBERON:0004638,2.07e-26,18;UBERON:0001986,2.07e-26,18;UBERON:0004852,2.07e-26,18;UBERON:0002780,1.16e-25,41;UBERON:0001890,1.16e-25,41;UBERON:0003080,1.16e-25,41;UBERON:0006240,1.16e-25,41;UBERON:0003075,7.03e-25,82;UBERON:0007284,7.03e-25,82;UBERON:0002346,2.31e-24,86;UBERON:0001017,3.69e-23,81;UBERON:0003528,4.30e-23,34;UBERON:0002020,4.30e-23,34;UBERON:0000955,6.44e-23,68;UBERON:0006238,6.44e-23,68;UBERON:0001893,7.43e-23,34;UBERON:0001869,3.66e-21,32;UBERON:0002791,4.42e-21,32;UBERON:0001016,1.73e-20,89;UBERON:0000487,1.95e-20,22;UBERON:0010371,1.55e-17,104;UBERON:0002619,1.59e-17,22;UBERON:0006914,3.11e-17,25;UBERON:0010314,4.84e-17,132;UBERON:0003056,1.94e-16,61;UBERON:0001950,1.01e-15,20;UBERON:0000483,3.94e-15,306;UBERON:0000956,7.88e-15,25;UBERON:0000203,7.88e-15,25;UBERON:0000119,9.57e-15,309;UBERON:0003915,4.06e-14,9;UBERON:0004700,4.06e-14,9;UBERON:0001917,4.06e-14,9;UBERON:0000055,4.29e-14,68;UBERON:0002049,4.83e-11,78;UBERON:0007798,4.83e-11,78;UBERON:0011216,6.30e-11,223;UBERON:0000125,3.62e-10,9;UBERON:0002308,3.62e-10,9;UBERON:0007500,5.84e-10,59;UBERON:0001981,5.84e-10,59;UBERON:0004537,5.84e-10,59;UBERON:0006965,5.84e-10,59;UBERON:0004121,1.10e-09,171;UBERON:0000924,1.10e-09,171;UBERON:0006601,1.10e-09,171;UBERON:0002465,2.43e-09,10;UBERON:0001009,7.11e-09,112;UBERON:0001638,1.30e-08,9;UBERON:0003920,1.30e-08,9;UBERON:0004582,1.30e-08,9;UBERON:0003076,2.74e-08,15;UBERON:0003057,2.74e-08,15;UBERON:0009663,4.32e-08,7;UBERON:0004872,7.05e-08,83;UBERON:0002420,7.63e-08,9;UBERON:0007245,7.63e-08,9;UBERON:0010009,7.63e-08,9;UBERON:0010011,7.63e-08,9;UBERON:0000454,7.63e-08,9;UBERON:0001473,1.53e-07,8;UBERON:0004536,1.53e-07,8;UBERON:0006558,1.53e-07,8;UBERON:0004535,2.60e-07,109;UBERON:0002050,4.06e-07,564;UBERON:0003914,4.74e-07,117;UBERON:0000922,4.88e-07,592;UBERON:0000923,5.76e-07,560;UBERON:0010316,5.76e-07,560;UBERON:0005291,5.76e-07,560;UBERON:0006598,5.76e-07,560;UBERON:0010317,5.76e-07,560;UBERON:0002532,5.76e-07,560;UBERON:0005423,7.17e-07,581;UBERON:0003103,9.76e-07,68;UBERON:0000200,9.78e-07,6 | |||
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|short_description=p3@SHROOM4 | |||
}} | }} |
Latest revision as of 22:29, 15 September 2015
Short description: | p3@SHROOM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHROOM4_5end |
Coexpression cluster: | C2447_Renal_lung_Endothelial_adipose_heart_Hepatic_mature |
Association with transcript: | 45bp_to_ENST00000460112, uc004dpf.1_5end |
EntrezGene: | SHROOM4 |
HGNC: | 29215 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.26e-35 | 24 |
endothelial cell | 2.10e-34 | 36 |
blood vessel endothelial cell | 2.07e-26 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.07e-26 | 18 |
meso-epithelial cell | 2.74e-25 | 45 |
lining cell | 3.01e-17 | 58 |
barrier cell | 3.01e-17 | 58 |
endothelial cell of artery | 4.06e-14 | 9 |
lymphangioblast | 1.73e-10 | 6 |
endothelial cell of lymphatic vessel | 1.73e-10 | 6 |
vascular lymphangioblast | 1.73e-10 | 6 |
vein endothelial cell | 1.82e-10 | 6 |
aortic endothelial cell | 3.53e-10 | 6 |