FFCP PHASE1:Hg19::chr17:42422637..42422655,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:42422637..42422655,+ to FFCP PHASE1:Hg19::chr17:42422637..42422655,+: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2896 | |EntrezGene=2896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4601 | |HGNC=4601 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H8S1 | |UniProt=Q9H8S1 | ||
|association_with_transcript=-14bp_to_ENST00000357351,ENST00000393566_5end | |||
|cluster_id=chr17:42422637..42422655,+ | |||
|coexpression_cluster_id=C1750 | |||
|description=CAGE_peak_2_at_GRN_5end | |||
|id=chr17:42422637..42422655,+ | |||
|ontology_enrichment_celltype=CL:0002009!2.45e-22!65;CL:0002371!5.59e-22!591;CL:0002194!7.14e-22!63;CL:0000576!7.14e-22!63;CL:0000040!7.14e-22!63;CL:0000559!7.14e-22!63;CL:0000557!1.83e-19!71;CL:0000144!6.31e-19!625;CL:0000548!1.69e-18!679;CL:0000004!1.69e-18!679;CL:0000255!1.69e-18!679;CL:0000766!1.18e-17!76;CL:0002057!1.21e-17!42;CL:0000012!2.04e-17!682;CL:0000839!3.10e-17!70;CL:0000860!2.81e-15!45;CL:0000063!3.00e-13!578;CL:0000222!3.44e-11!119;CL:0002078!1.40e-09!44;CL:0000213!4.97e-09!57;CL:0000215!4.97e-09!57;CL:0000048!1.12e-08!430;CL:0000115!1.19e-08!35;CL:0000723!1.34e-08!436;CL:0000003!6.07e-08!722;CL:0002320!4.23e-07!365;CL:0000034!6.09e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.51e-17;39!CL:0000234;1.51e-17;39!CL:0000860;6.84e-17;33!CL:0002057;6.84e-17;33!CL:0000576;8.43e-13;48!CL:0000766;1.02e-08;69!CL:0000115;1.15e-07;36!CL:0002078;1.27e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,1.72e-24,61;CL:0002194,4.78e-24,59;CL:0000576,4.78e-24,59;CL:0000040,4.78e-24,59;CL:0000559,4.78e-24,59;CL:0000473,1.36e-21,48;CL:0000234,1.36e-21,48;CL:0000557,3.04e-21,67;CL:0000766,3.33e-19,72;CL:0000839,7.30e-19,66;CL:0000860,1.21e-17,42;CL:0002057,1.21e-17,42;CL:0000222,1.43e-11,121;CL:0002078,8.26e-10,45;CL:0000213,2.99e-09,58;CL:0000215,2.99e-09,58;CL:0000048,4.37e-09,427;CL:0000723,5.27e-09,433;CL:0000115,7.07e-09,36;CL:0002320,2.34e-07,361;CL:0000034,2.68e-07,441;CL:0000763,4.39e-07,108;CL:0000049,4.39e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;3.74e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.15e-24!216;UBERON:0000926!5.75e-22!448;UBERON:0004120!5.75e-22!448;UBERON:0006603!5.75e-22!448;UBERON:0002371!2.28e-19!80;UBERON:0002204!1.30e-18!167;UBERON:0001474!1.08e-17!86;UBERON:0002405!2.76e-17!115;UBERON:0004765!6.28e-17!101;UBERON:0001434!6.28e-17!101;UBERON:0002193!6.60e-15!112;UBERON:0000468!1.01e-13!659;UBERON:0000467!4.31e-12!625;UBERON:0002390!4.53e-12!102;UBERON:0003061!4.53e-12!102;UBERON:0000480!7.58e-12!626;UBERON:0000923!6.24e-08!604;UBERON:0005291!6.24e-08!604;UBERON:0006598!6.24e-08!604;UBERON:0002532!6.24e-08!604;UBERON:0002050!6.42e-08!605;UBERON:0005423!6.42e-08!605;UBERON:0000062!2.16e-07!511;UBERON:0002384!5.29e-07!375;UBERON:0002049!8.76e-07!79;UBERON:0007798!8.76e-07!79;UBERON:0000922!9.01e-07!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,9.45e-25,315;UBERON:0004120,9.45e-25,315;UBERON:0006603,9.45e-25,315;UBERON:0003081,9.78e-24,203;UBERON:0002371,5.70e-21,76;UBERON:0002405,9.06e-21,93;UBERON:0002204,9.31e-21,167;UBERON:0004765,3.71e-20,90;UBERON:0001434,2.94e-19,100;UBERON:0001474,4.28e-19,82;UBERON:0002193,6.75e-16,108;UBERON:0002390,5.69e-13,98;UBERON:0003061,5.69e-13,98;UBERON:0005423,7.26e-08,581;UBERON:0000923,2.69e-07,560;UBERON:0010316,2.69e-07,560;UBERON:0005291,2.69e-07,560;UBERON:0006598,2.69e-07,560;UBERON:0010317,2.69e-07,560;UBERON:0002532,2.69e-07,560;UBERON:0002384,2.97e-07,371;UBERON:0002050,3.19e-07,564;UBERON:0000922,6.72e-07,592 | |||
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| ||
|short_description=p2@GRN | |||
}} | }} |
Latest revision as of 20:59, 24 September 2015
Short description: | p2@GRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GRN_5end |
Coexpression cluster: | C1750_Monocytederived_Fibroblast_Mesenchymal_Smooth_Macrophage_CD14_Pericytes |
Association with transcript: | -14bp_to_ENST00000357351, ENST00000393566_5end |
EntrezGene: | GRN |
HGNC: | 4601 |
UniProt: | Q9H8S1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 1.72e-24 | 61 |
monopoietic cell | 4.78e-24 | 59 |
monocyte | 4.78e-24 | 59 |
monoblast | 4.78e-24 | 59 |
promonocyte | 4.78e-24 | 59 |
defensive cell | 1.36e-21 | 48 |
phagocyte | 1.36e-21 | 48 |
granulocyte monocyte progenitor cell | 3.04e-21 | 67 |
myeloid leukocyte | 3.33e-19 | 72 |
myeloid lineage restricted progenitor cell | 7.30e-19 | 66 |
classical monocyte | 1.21e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.21e-17 | 42 |
mesodermal cell | 1.43e-11 | 121 |
meso-epithelial cell | 8.26e-10 | 45 |
lining cell | 2.99e-09 | 58 |
barrier cell | 2.99e-09 | 58 |
multi fate stem cell | 4.37e-09 | 427 |
somatic stem cell | 5.27e-09 | 433 |
endothelial cell | 7.07e-09 | 36 |
connective tissue cell | 2.34e-07 | 361 |
stem cell | 2.68e-07 | 441 |
myeloid cell | 4.39e-07 | 108 |
common myeloid progenitor | 4.39e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 9.45e-25 | 315 |
mesoderm-derived structure | 9.45e-25 | 315 |
presumptive mesoderm | 9.45e-25 | 315 |
lateral plate mesoderm | 9.78e-24 | 203 |
bone marrow | 5.70e-21 | 76 |
immune system | 9.06e-21 | 93 |
musculoskeletal system | 9.31e-21 | 167 |
skeletal element | 3.71e-20 | 90 |
skeletal system | 2.94e-19 | 100 |
bone element | 4.28e-19 | 82 |
hemolymphoid system | 6.75e-16 | 108 |
hematopoietic system | 5.69e-13 | 98 |
blood island | 5.69e-13 | 98 |
developing anatomical structure | 7.26e-08 | 581 |
germ layer | 2.69e-07 | 560 |
germ layer / neural crest | 2.69e-07 | 560 |
embryonic tissue | 2.69e-07 | 560 |
presumptive structure | 2.69e-07 | 560 |
germ layer / neural crest derived structure | 2.69e-07 | 560 |
epiblast (generic) | 2.69e-07 | 560 |
connective tissue | 2.97e-07 | 371 |
embryonic structure | 3.19e-07 | 564 |
embryo | 6.72e-07 | 592 |