FFCP PHASE1:Mm9::chr2:132607341..132607365,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12653|HGNC=|MCL_coexpression_id=278|UniProt=P16014,E9Q957,Q3TY66|association_with_transcript=327bp_to_ENSMUST00000028826,ENSMUST00000168530,NM_007694,uc008mnf.1_5end|description=CAGE_peak_3_at_Chgb_5end|id=chr2:132607341..132607365,+|ontology_enrichment_celltype=CL:0000540!3.11e-14!33;CL:0000047!3.11e-14!33;CL:0000031!3.11e-14!33;CL:0000404!3.11e-14!33;CL:0000117!1.73e-13!23;CL:0000337!1.73e-13!23;CL:0000393!8.39e-10!39;CL:0000211!8.39e-10!39;CL:0000221!3.51e-09!44;CL:0000133!3.51e-09!44;CL:0002319!5.00e-09!43|ontology_enrichment_celltype_v019_2=CL:0000117,5.90e-16,23;CL:0000337,5.90e-16,23;CL:0000540,3.92e-14,33;CL:0000047,3.92e-14,33;CL:0000031,3.92e-14,33;CL:0000404,3.92e-14,33;CL:0000393,2.54e-10,39;CL:0000211,2.54e-10,39;CL:0000221,1.26e-08,44;CL:0000133,1.26e-08,44;CL:0002319,1.92e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.94e-32!71;UBERON:0003075!1.94e-32!71;UBERON:0007284!1.94e-32!71;UBERON:0001017!2.40e-29!73;UBERON:0005743!2.40e-29!73;UBERON:0000073!3.95e-29!75;UBERON:0001016!3.95e-29!75;UBERON:0004121!9.01e-29!102;UBERON:0000924!9.01e-29!102;UBERON:0006601!9.01e-29!102;UBERON:0000033!1.92e-27!63;UBERON:0001049!1.29e-26!52;UBERON:0005068!1.29e-26!52;UBERON:0006241!1.29e-26!52;UBERON:0007135!1.29e-26!52;UBERON:0000955!5.63e-26!50;UBERON:0006238!5.63e-26!50;UBERON:0002616!3.64e-25!49;UBERON:0003056!5.10e-23!49;UBERON:0003080!4.15e-21!40;UBERON:0002780!2.25e-20!39;UBERON:0001890!2.25e-20!39;UBERON:0006240!2.25e-20!39;UBERON:0002020!5.07e-18!34;UBERON:0002791!3.80e-15!29;UBERON:0003528!3.80e-15!29;UBERON:0001893!3.80e-15!29;UBERON:0007811!9.09e-14!86;UBERON:0000956!1.76e-10!21;UBERON:0001869!1.76e-10!21;UBERON:0000203!1.76e-10!21;UBERON:0000153!1.90e-10!94;UBERON:0002619!1.52e-08!17;UBERON:0002021!1.69e-08!10;UBERON:0000411!1.69e-08!10;UBERON:0001950!1.69e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.57e-34,54;UBERON:0001017,4.51e-33,73;UBERON:0002346,1.55e-32,64;UBERON:0003075,1.55e-32,64;UBERON:0007284,1.55e-32,64;UBERON:0001049,6.75e-32,52;UBERON:0005068,6.75e-32,52;UBERON:0006241,6.75e-32,52;UBERON:0007135,6.75e-32,52;UBERON:0001016,1.66e-31,75;UBERON:0000955,2.96e-28,47;UBERON:0006238,2.96e-28,47;UBERON:0010371,9.82e-28,73;UBERON:0002616,2.70e-27,46;UBERON:0004121,3.62e-27,95;UBERON:0000924,3.62e-27,95;UBERON:0006601,3.62e-27,95;UBERON:0003056,2.33e-26,49;UBERON:0003080,1.24e-25,40;UBERON:0002780,9.67e-25,39;UBERON:0001890,9.67e-25,39;UBERON:0006240,9.67e-25,39;UBERON:0010314,3.08e-24,92;UBERON:0002020,6.79e-22,34;UBERON:0003528,2.07e-18,29;UBERON:0002791,2.07e-18,29;UBERON:0001893,2.07e-18,29;UBERON:0000956,9.39e-13,21;UBERON:0001869,9.39e-13,21;UBERON:0000203,9.39e-13,21;UBERON:0002619,2.07e-10,17;UBERON:0002021,6.16e-10,10;UBERON:0000411,6.16e-10,10;UBERON:0001950,6.16e-10,10;UBERON:0001894,3.48e-07,10;UBERON:0006222,3.48e-07,10;UBERON:0002420,6.56e-07,8;UBERON:0007245,6.56e-07,8;UBERON:0010009,6.56e-07,8;UBERON:0010011,6.56e-07,8;UBERON:0000454,6.56e-07,8|phase1_expression=3.36312578920067,0,0,0,1.00179145989269,2.18243053485457,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,7.39876624314307,0,0,0.639969691173627,0.45881856213434,0.57423196411502,0.430761996159075,0.215471232685889,0.380046838912748,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,9.5088736604011,7.40587370980846,8.87363964908651,0,0,0,0,0,0,0,7.36196247390191,5.26523159493594,7.78202357000113,13.9968982357864,9.49734726091938,5.87955836231779,5.271500906003,4.5960939330501,28.6301290598411,32.5602712117229,37.9408137142921,10.1552441552249,9.33173964744578,7.29278718779464,23.451371916116,25.3243174514256,26.4340968653881,18.2669722993674,18.3659468230843,12.4887628702951,0.302904773332736,0.529000920747499,0,0,0,0,0,0,1.96622188184453,0,0,0,1.54927761754349,0,0,0,0,0,0,1.37020655662872,0,11.2816025689267,2.94925055502431,4.26251669636998,2.07553947530453,3.61734337326294,6.23220147819235,5.52933001850572,0,0,0,0.161766849947409,0,0,1.86391761218122,45.9665851308129,33.3020263833394,0.510914110417183,0,0,0,30.1079185203694,35.6850470198529,12.8167439155122,25.2045264278801,26.338692105024,34.2850273523274,30.0146336675352,0,0,0,3.57751155007006,0.260240885925407,1.37941262660084,0.900310649026746,1.9591626318643,2.17716797284249,3.07472928683639,2.90475346135159,14.7460921321239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0.219550115291051,0,26.2862435705159,10.7020796874456,1.32167513193519,0.528901133327089,0.426576501070468,0.232236671860439,0.257734922644187,0.403367049246685,0.667134131534611,0.380451252225118,0.474529061544512,1.81168850196412,1.50801125280162,0.795825888164603,0.974820435595601,0.898819408654221,0.648414149624083,1.1948476395262,0,0.913988100877831,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8119485279613,30.592250200565,0,0,1.26203287766503,0.390438744296638,2.58508077279359,0.477937595905104,0.445597348164788,0.849229592366497,2.02405350837447,2.63030272120181,3.95287777946523,33.7387382242897,0,0,0,0,2.65490276679926,1.94224508923985,3.32555912661226,2.45186603682668,5.02013217897314,6.14870295887855,2.58428293168221,7.99774204850512,4.27796854061666,1.8962205476149,0,6.18813259489121,155.921339435235,1.44048875225048,1.4229455216103,4.50107773566344,12.945837055886,21.7609957474526,24.0241570079097,17.6589670486468,0,0,0.441056796109924,0,0,0,0,0,0.582961673259701,24.4761398653873,0,0.206386867963223,0,0,0,0,0,0,0,4.77335309007557,0.158167996790568,0.609958401380546,0.324016022465404,0.418176592028937,0.655087691238533,0.539457385539283,0.909188012978695,0.523511883968059,0.518459893167171,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0.316011120628178,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0.226730383615211,0,0,0,0,0,0,0,0,42.35638819628,37.7466693935885,37.2382083735608,28.8713346337395,26.0331357512844,23.4172108190807,32.4010800111267,31.5224842256954,33.9856806738153,33.6544202638683,0.415149390336707,1.59609949360412,1.87806966329548,2.18796045361465,1.67690530102386,2.20612210140017,1.55572709461131,2.06035057238894,3.53011130550997,0.758091635291392,2.78827229879264,0.754505365544305,2.43467919421694,2.04880487695582,1.43588672389033,1.42888107384922,2.31768651889711,0.578727661391115,2.47251540481984,1.76638704161277,2.40008476669791,1.4198064492747,1.90748951957857,1.59881058295561,1.97629698872194,1.69229215783353,1.28049581010941,1.31534855718921,2.8518863907631,3.36685362994643,2.25406534435931,1.47756723563345,2.45538625901814,1.85924209423159,0.964533054905707,3.49734809113124,2.33931608445408,2.14871054048298,1.14772999241306,1.32354851471709,0.695603506861264|short_description=p3@Chgb}} | ||
|EntrezGene=12653 | |||
|HGNC= | |||
|MCL_coexpression_id=278 | |||
|UniProt=P16014,E9Q957,Q3TY66 | |||
|association_with_transcript=327bp_to_ENSMUST00000028826,ENSMUST00000168530,NM_007694,uc008mnf.1_5end | |||
|description=CAGE_peak_3_at_Chgb_5end | |||
|id=chr2:132607341..132607365,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.11e-14!33;CL:0000047!3.11e-14!33;CL:0000031!3.11e-14!33;CL:0000404!3.11e-14!33;CL:0000117!1.73e-13!23;CL:0000337!1.73e-13!23;CL:0000393!8.39e-10!39;CL:0000211!8.39e-10!39;CL:0000221!3.51e-09!44;CL:0000133!3.51e-09!44;CL:0002319!5.00e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.90e-16,23;CL:0000337,5.90e-16,23;CL:0000540,3.92e-14,33;CL:0000047,3.92e-14,33;CL:0000031,3.92e-14,33;CL:0000404,3.92e-14,33;CL:0000393,2.54e-10,39;CL:0000211,2.54e-10,39;CL:0000221,1.26e-08,44;CL:0000133,1.26e-08,44;CL:0002319,1.92e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.94e-32!71;UBERON:0003075!1.94e-32!71;UBERON:0007284!1.94e-32!71;UBERON:0001017!2.40e-29!73;UBERON:0005743!2.40e-29!73;UBERON:0000073!3.95e-29!75;UBERON:0001016!3.95e-29!75;UBERON:0004121!9.01e-29!102;UBERON:0000924!9.01e-29!102;UBERON:0006601!9.01e-29!102;UBERON:0000033!1.92e-27!63;UBERON:0001049!1.29e-26!52;UBERON:0005068!1.29e-26!52;UBERON:0006241!1.29e-26!52;UBERON:0007135!1.29e-26!52;UBERON:0000955!5.63e-26!50;UBERON:0006238!5.63e-26!50;UBERON:0002616!3.64e-25!49;UBERON:0003056!5.10e-23!49;UBERON:0003080!4.15e-21!40;UBERON:0002780!2.25e-20!39;UBERON:0001890!2.25e-20!39;UBERON:0006240!2.25e-20!39;UBERON:0002020!5.07e-18!34;UBERON:0002791!3.80e-15!29;UBERON:0003528!3.80e-15!29;UBERON:0001893!3.80e-15!29;UBERON:0007811!9.09e-14!86;UBERON:0000956!1.76e-10!21;UBERON:0001869!1.76e-10!21;UBERON:0000203!1.76e-10!21;UBERON:0000153!1.90e-10!94;UBERON:0002619!1.52e-08!17;UBERON:0002021!1.69e-08!10;UBERON:0000411!1.69e-08!10;UBERON:0001950!1.69e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.57e-34,54;UBERON:0001017,4.51e-33,73;UBERON:0002346,1.55e-32,64;UBERON:0003075,1.55e-32,64;UBERON:0007284,1.55e-32,64;UBERON:0001049,6.75e-32,52;UBERON:0005068,6.75e-32,52;UBERON:0006241,6.75e-32,52;UBERON:0007135,6.75e-32,52;UBERON:0001016,1.66e-31,75;UBERON:0000955,2.96e-28,47;UBERON:0006238,2.96e-28,47;UBERON:0010371,9.82e-28,73;UBERON:0002616,2.70e-27,46;UBERON:0004121,3.62e-27,95;UBERON:0000924,3.62e-27,95;UBERON:0006601,3.62e-27,95;UBERON:0003056,2.33e-26,49;UBERON:0003080,1.24e-25,40;UBERON:0002780,9.67e-25,39;UBERON:0001890,9.67e-25,39;UBERON:0006240,9.67e-25,39;UBERON:0010314,3.08e-24,92;UBERON:0002020,6.79e-22,34;UBERON:0003528,2.07e-18,29;UBERON:0002791,2.07e-18,29;UBERON:0001893,2.07e-18,29;UBERON:0000956,9.39e-13,21;UBERON:0001869,9.39e-13,21;UBERON:0000203,9.39e-13,21;UBERON:0002619,2.07e-10,17;UBERON:0002021,6.16e-10,10;UBERON:0000411,6.16e-10,10;UBERON:0001950,6.16e-10,10;UBERON:0001894,3.48e-07,10;UBERON:0006222,3.48e-07,10;UBERON:0002420,6.56e-07,8;UBERON:0007245,6.56e-07,8;UBERON:0010009,6.56e-07,8;UBERON:0010011,6.56e-07,8;UBERON:0000454,6.56e-07,8 | |||
|phase1_expression=3.36312578920067,0,0,0,1.00179145989269,2.18243053485457,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,7.39876624314307,0,0,0.639969691173627,0.45881856213434,0.57423196411502,0.430761996159075,0.215471232685889,0.380046838912748,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,9.5088736604011,7.40587370980846,8.87363964908651,0,0,0,0,0,0,0,7.36196247390191,5.26523159493594,7.78202357000113,13.9968982357864,9.49734726091938,5.87955836231779,5.271500906003,4.5960939330501,28.6301290598411,32.5602712117229,37.9408137142921,10.1552441552249,9.33173964744578,7.29278718779464,23.451371916116,25.3243174514256,26.4340968653881,18.2669722993674,18.3659468230843,12.4887628702951,0.302904773332736,0.529000920747499,0,0,0,0,0,0,1.96622188184453,0,0,0,1.54927761754349,0,0,0,0,0,0,1.37020655662872,0,11.2816025689267,2.94925055502431,4.26251669636998,2.07553947530453,3.61734337326294,6.23220147819235,5.52933001850572,0,0,0,0.161766849947409,0,0,1.86391761218122,45.9665851308129,33.3020263833394,0.510914110417183,0,0,0,30.1079185203694,35.6850470198529,12.8167439155122,25.2045264278801,26.338692105024,34.2850273523274,30.0146336675352,0,0,0,3.57751155007006,0.260240885925407,1.37941262660084,0.900310649026746,1.9591626318643,2.17716797284249,3.07472928683639,2.90475346135159,14.7460921321239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0.219550115291051,0,26.2862435705159,10.7020796874456,1.32167513193519,0.528901133327089,0.426576501070468,0.232236671860439,0.257734922644187,0.403367049246685,0.667134131534611,0.380451252225118,0.474529061544512,1.81168850196412,1.50801125280162,0.795825888164603,0.974820435595601,0.898819408654221,0.648414149624083,1.1948476395262,0,0.913988100877831,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8119485279613,30.592250200565,0,0,1.26203287766503,0.390438744296638,2.58508077279359,0.477937595905104,0.445597348164788,0.849229592366497,2.02405350837447,2.63030272120181,3.95287777946523,33.7387382242897,0,0,0,0,2.65490276679926,1.94224508923985,3.32555912661226,2.45186603682668,5.02013217897314,6.14870295887855,2.58428293168221,7.99774204850512,4.27796854061666,1.8962205476149,0,6.18813259489121,155.921339435235,1.44048875225048,1.4229455216103,4.50107773566344,12.945837055886,21.7609957474526,24.0241570079097,17.6589670486468,0,0,0.441056796109924,0,0,0,0,0,0.582961673259701,24.4761398653873,0,0.206386867963223,0,0,0,0,0,0,0,4.77335309007557,0.158167996790568,0.609958401380546,0.324016022465404,0.418176592028937,0.655087691238533,0.539457385539283,0.909188012978695,0.523511883968059,0.518459893167171,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0.316011120628178,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0.226730383615211,0,0,0,0,0,0,0,0,42.35638819628,37.7466693935885,37.2382083735608,28.8713346337395,26.0331357512844,23.4172108190807,32.4010800111267,31.5224842256954,33.9856806738153,33.6544202638683,0.415149390336707,1.59609949360412,1.87806966329548,2.18796045361465,1.67690530102386,2.20612210140017,1.55572709461131,2.06035057238894,3.53011130550997,0.758091635291392,2.78827229879264,0.754505365544305,2.43467919421694,2.04880487695582,1.43588672389033,1.42888107384922,2.31768651889711,0.578727661391115,2.47251540481984,1.76638704161277,2.40008476669791,1.4198064492747,1.90748951957857,1.59881058295561,1.97629698872194,1.69229215783353,1.28049581010941,1.31534855718921,2.8518863907631,3.36685362994643,2.25406534435931,1.47756723563345,2.45538625901814,1.85924209423159,0.964533054905707,3.49734809113124,2.33931608445408,2.14871054048298,1.14772999241306,1.32354851471709,0.695603506861264 | |||
|short_description=p3@Chgb | |||
}} |
Revision as of 22:09, 13 September 2013
Short description: | p3@Chgb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Chgb_5end |
Coexpression cluster: | MCL_coexpression_mm9:278 |
Association with transcript: | 327bp_to_ENSMUST00000028826, ENSMUST00000168530, NM_007694, uc008mnf.1_5end |
EntrezGene: | Chgb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.90e-16 | 23 |
neuroblast (sensu Vertebrata) | 5.90e-16 | 23 |
neuron | 3.92e-14 | 33 |
neuronal stem cell | 3.92e-14 | 33 |
neuroblast | 3.92e-14 | 33 |
electrically signaling cell | 3.92e-14 | 33 |
electrically responsive cell | 2.54e-10 | 39 |
electrically active cell | 2.54e-10 | 39 |
ectodermal cell | 1.26e-08 | 44 |
neurectodermal cell | 1.26e-08 | 44 |
neural cell | 1.92e-08 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.