FFCP PHASE1:Mm9::chr17:48439703..48439721,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=328833|HGNC=|MCL_coexpression_id=36|UniProt=|association_with_transcript=23bp_to_ENSMUST00000166699_5end|description=CAGE_peak_3_at_Treml2_5end|id=chr17:48439703..48439721,+|ontology_enrichment_celltype=CL:0000988!7.26e-13!32;CL:0002032!7.26e-13!32;CL:0000037!7.26e-13!32;CL:0000566!7.26e-13!32;CL:0000837!7.26e-13!32;CL:0002031!2.64e-10!25;CL:0000838!2.38e-09!12;CL:0000084!1.44e-08!11;CL:0000827!1.44e-08!11;CL:0000542!2.78e-08!13;CL:0000051!2.78e-08!13;CL:0000791!3.13e-07!9;CL:0000789!3.13e-07!9;CL:0002420!3.13e-07!9;CL:0002419!3.13e-07!9;CL:0000790!3.13e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,5.99e-17,32;CL:0002032,5.99e-17,32;CL:0000037,5.99e-17,32;CL:0000837,5.99e-17,32;CL:0002031,8.49e-14,25;CL:0000838,4.01e-11,12;CL:0000542,4.45e-10,13;CL:0000051,4.45e-10,13;CL:0002320,6.38e-10,46;CL:0000134,6.38e-10,46;CL:0000084,7.35e-10,11;CL:0000827,7.35e-10,11;CL:0000049,2.55e-08,19;CL:0000791,1.10e-07,9;CL:0000789,1.10e-07,9;CL:0002420,1.10e-07,9;CL:0002419,1.10e-07,9;CL:0000790,1.10e-07,9;CL:0000219,1.32e-07,54;CL:0000050,1.34e-07,9;CL:0000738,3.78e-07,17;CL:0002087,3.78e-07,17|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0050686,8.96e-07,6|ontology_enrichment_uberon=UBERON:0002405!1.04e-18!70;UBERON:0002193!8.82e-18!48;UBERON:0002390!2.90e-16!45;UBERON:0003061!2.90e-16!45;UBERON:0004177!7.45e-16!29;UBERON:0005057!1.64e-15!51;UBERON:0006562!1.79e-12!24;UBERON:0001557!1.79e-12!24;UBERON:0001042!1.79e-12!24;UBERON:0008814!1.79e-12!24;UBERON:0009145!1.79e-12!24;UBERON:0002370!2.83e-12!23;UBERON:0000974!2.83e-12!23;UBERON:0004807!2.83e-12!23;UBERON:0005058!2.83e-12!23;UBERON:0003351!2.83e-12!23;UBERON:0009113!2.83e-12!23;UBERON:0003295!2.83e-12!23;UBERON:0009722!2.83e-12!23;UBERON:0005562!2.83e-12!23;UBERON:0007690!2.83e-12!23;UBERON:0003408!2.02e-11!24;UBERON:0000072!3.71e-10!27;UBERON:0001041!1.51e-09!92;UBERON:0000065!2.17e-09!41;UBERON:0000077!3.37e-09!97;UBERON:0001004!6.26e-09!42;UBERON:0002368!2.58e-08!60;UBERON:0005911!3.16e-08!69;UBERON:0003104!7.61e-08!131;UBERON:0009142!7.61e-08!131;UBERON:0003929!7.68e-08!55;UBERON:0000490!5.08e-07!66;UBERON:0003081!7.18e-07!88;UBERON:0002530!8.37e-07!65|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.32e-23,45;UBERON:0003061,9.32e-23,45;UBERON:0002193,1.36e-22,48;UBERON:0002405,1.36e-22,48;UBERON:0004177,4.65e-22,29;UBERON:0005057,4.65e-22,29;UBERON:0002370,1.13e-17,23;UBERON:0000974,1.13e-17,23;UBERON:0004807,1.13e-17,23;UBERON:0005058,1.13e-17,23;UBERON:0003351,1.13e-17,23;UBERON:0009113,1.13e-17,23;UBERON:0003295,1.13e-17,23;UBERON:0009722,1.13e-17,23;UBERON:0005562,1.13e-17,23;UBERON:0007690,1.13e-17,23;UBERON:0000077,4.22e-17,35;UBERON:0006562,1.03e-16,24;UBERON:0003408,1.03e-16,24;UBERON:0001557,1.03e-16,24;UBERON:0001042,1.03e-16,24;UBERON:0008814,1.03e-16,24;UBERON:0009145,1.03e-16,24;UBERON:0000072,2.85e-14,27;UBERON:0000490,3.57e-11,66;UBERON:0003929,6.31e-11,55;UBERON:0003081,4.88e-10,87;UBERON:0002384,6.38e-10,46;UBERON:0001041,7.40e-10,80;UBERON:0002368,1.91e-09,60;UBERON:0007811,1.93e-09,36;UBERON:0000065,1.32e-08,41;UBERON:0001004,2.79e-08,42;UBERON:0002530,3.29e-08,65;UBERON:0005911,4.68e-08,69;UBERON:0000949,1.96e-07,72;UBERON:0000153,3.91e-07,43;UBERON:0000926,5.15e-07,120;UBERON:0004120,5.15e-07,120;UBERON:0006603,5.15e-07,120|phase1_expression=0,0,0,0,0,0,0,22.7257049257174,1.40788722151667,1.17032263160997,0.68487187290202,0.319088635981346,16.7776715332582,23.4286678482913,1.66554880907831,3.44207954562704,0.699561878128147,13.7226041930833,13.3001000597567,12.3072999021429,0.255129870453209,5.36171136484781,3.13439746966722,0.319984845586813,0.45881856213434,0,0,0,0,0,0,1.27006134691926,0,15.8481681015439,0,0,0,19.2524550138978,8.5946887897618,15.7057123192139,14.1175557127443,15.0270006690858,16.5073520030592,0,0,0,0,0,0,0,0,0,8.55691290894455,7.25362142011344,6.38578218370682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26399978118577,0,0,0,0,0,0,0,0,0,0,0.34255163915718,8.54495016035667,0.148442139064825,0.346970653532272,0,0,0.150722640552623,0,0,0,0,1.76922110389975,0.161766849947409,2.20841518460394,0,0,0,0,0,1.7972268675888,1.19980546198682,2.92261522268049,0,0,0,0,0,0,0,0,1.7416975885413,0,0,0,0,0,0.452114453507145,0,0,0,0,0,0,0,0,0,0,0,0.398068533636986,0.702213187313235,3.3455227924913,1.70498099637356,0,0,0,0,0.196764231747404,0,0,0,0.350296027101508,0,0,0,0,0.219550115291051,0.268412837520744,0.210289948564127,0,0,0,0,0,0,0,0.22237804384487,0,0.474529061544512,0,0,0.198956472041151,0.58489226135736,0,0,0,0.189667900953082,0.114248512609729,0,0,0,0.0701358198903186,0,0,0,0,0,2.00214126859313,1.76903095601883,1.34917267430912,1.42002084971952,0.72353147925725,0.763877555344259,1.43848068725405,1.45921704097532,0.274561413188081,1.43768206527355,1.11642284300551,0.624075346229121,0,0.179397413521912,0,0.184753190166605,0,0,0,0,0,0,0.195133647857799,0.315270288212382,0.44292937929755,0.318909537314974,1.14704320301017,0.863424909329478,0.433947175744535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0,0,0.316036757935816,0,1.03135543248187,0,0,0,0,0,0.178368817602071,0,0,0.23467170806371,0,0,0,0,0.0603129249281559,0,0,0.291480836629851,0,3.75915937755276,0.412773735926445,2.77791791054568,1.69531611304222,4.10082683163076,3.20289442489132,4.58941760983409,5.45810664062266,4.69879910935041,0,0,0,0,0,0,0.134864346384821,0.0826534557253359,0,0.388844919875379,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0,0,0,9.16432249821717,2.43270258348197,3.3894615864393,2.98817892848929,3.75956060901711,5.56307793387542,7.57231331975804,8.27061352177632,8.27924889574811,8.83998957197998,9.57848758799985,10.622909000633,8.85148943091031,11.92144402252,0.226730383615211,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682934423016537,0,0.419226325255965,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0,0,0.294397840268795,0,0,0,0,0.188218760830661,0.25384382367503,0.182927972872773,0,0.271608227691724,0,0.118635018124174,0.0985044823755635,0.818462086339379,0,0,0,0.233931608445408,0,0,0.441182838239031,0.463735671240843|short_description=p3@Treml2}} | ||
|EntrezGene=328833 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|UniProt= | |||
|association_with_transcript=23bp_to_ENSMUST00000166699_5end | |||
|description=CAGE_peak_3_at_Treml2_5end | |||
|id=chr17:48439703..48439721,+ | |||
|ontology_enrichment_celltype=CL:0000988!7.26e-13!32;CL:0002032!7.26e-13!32;CL:0000037!7.26e-13!32;CL:0000566!7.26e-13!32;CL:0000837!7.26e-13!32;CL:0002031!2.64e-10!25;CL:0000838!2.38e-09!12;CL:0000084!1.44e-08!11;CL:0000827!1.44e-08!11;CL:0000542!2.78e-08!13;CL:0000051!2.78e-08!13;CL:0000791!3.13e-07!9;CL:0000789!3.13e-07!9;CL:0002420!3.13e-07!9;CL:0002419!3.13e-07!9;CL:0000790!3.13e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,5.99e-17,32;CL:0002032,5.99e-17,32;CL:0000037,5.99e-17,32;CL:0000837,5.99e-17,32;CL:0002031,8.49e-14,25;CL:0000838,4.01e-11,12;CL:0000542,4.45e-10,13;CL:0000051,4.45e-10,13;CL:0002320,6.38e-10,46;CL:0000134,6.38e-10,46;CL:0000084,7.35e-10,11;CL:0000827,7.35e-10,11;CL:0000049,2.55e-08,19;CL:0000791,1.10e-07,9;CL:0000789,1.10e-07,9;CL:0002420,1.10e-07,9;CL:0002419,1.10e-07,9;CL:0000790,1.10e-07,9;CL:0000219,1.32e-07,54;CL:0000050,1.34e-07,9;CL:0000738,3.78e-07,17;CL:0002087,3.78e-07,17 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0050686,8.96e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0002405!1.04e-18!70;UBERON:0002193!8.82e-18!48;UBERON:0002390!2.90e-16!45;UBERON:0003061!2.90e-16!45;UBERON:0004177!7.45e-16!29;UBERON:0005057!1.64e-15!51;UBERON:0006562!1.79e-12!24;UBERON:0001557!1.79e-12!24;UBERON:0001042!1.79e-12!24;UBERON:0008814!1.79e-12!24;UBERON:0009145!1.79e-12!24;UBERON:0002370!2.83e-12!23;UBERON:0000974!2.83e-12!23;UBERON:0004807!2.83e-12!23;UBERON:0005058!2.83e-12!23;UBERON:0003351!2.83e-12!23;UBERON:0009113!2.83e-12!23;UBERON:0003295!2.83e-12!23;UBERON:0009722!2.83e-12!23;UBERON:0005562!2.83e-12!23;UBERON:0007690!2.83e-12!23;UBERON:0003408!2.02e-11!24;UBERON:0000072!3.71e-10!27;UBERON:0001041!1.51e-09!92;UBERON:0000065!2.17e-09!41;UBERON:0000077!3.37e-09!97;UBERON:0001004!6.26e-09!42;UBERON:0002368!2.58e-08!60;UBERON:0005911!3.16e-08!69;UBERON:0003104!7.61e-08!131;UBERON:0009142!7.61e-08!131;UBERON:0003929!7.68e-08!55;UBERON:0000490!5.08e-07!66;UBERON:0003081!7.18e-07!88;UBERON:0002530!8.37e-07!65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.32e-23,45;UBERON:0003061,9.32e-23,45;UBERON:0002193,1.36e-22,48;UBERON:0002405,1.36e-22,48;UBERON:0004177,4.65e-22,29;UBERON:0005057,4.65e-22,29;UBERON:0002370,1.13e-17,23;UBERON:0000974,1.13e-17,23;UBERON:0004807,1.13e-17,23;UBERON:0005058,1.13e-17,23;UBERON:0003351,1.13e-17,23;UBERON:0009113,1.13e-17,23;UBERON:0003295,1.13e-17,23;UBERON:0009722,1.13e-17,23;UBERON:0005562,1.13e-17,23;UBERON:0007690,1.13e-17,23;UBERON:0000077,4.22e-17,35;UBERON:0006562,1.03e-16,24;UBERON:0003408,1.03e-16,24;UBERON:0001557,1.03e-16,24;UBERON:0001042,1.03e-16,24;UBERON:0008814,1.03e-16,24;UBERON:0009145,1.03e-16,24;UBERON:0000072,2.85e-14,27;UBERON:0000490,3.57e-11,66;UBERON:0003929,6.31e-11,55;UBERON:0003081,4.88e-10,87;UBERON:0002384,6.38e-10,46;UBERON:0001041,7.40e-10,80;UBERON:0002368,1.91e-09,60;UBERON:0007811,1.93e-09,36;UBERON:0000065,1.32e-08,41;UBERON:0001004,2.79e-08,42;UBERON:0002530,3.29e-08,65;UBERON:0005911,4.68e-08,69;UBERON:0000949,1.96e-07,72;UBERON:0000153,3.91e-07,43;UBERON:0000926,5.15e-07,120;UBERON:0004120,5.15e-07,120;UBERON:0006603,5.15e-07,120 | |||
|phase1_expression=0,0,0,0,0,0,0,22.7257049257174,1.40788722151667,1.17032263160997,0.68487187290202,0.319088635981346,16.7776715332582,23.4286678482913,1.66554880907831,3.44207954562704,0.699561878128147,13.7226041930833,13.3001000597567,12.3072999021429,0.255129870453209,5.36171136484781,3.13439746966722,0.319984845586813,0.45881856213434,0,0,0,0,0,0,1.27006134691926,0,15.8481681015439,0,0,0,19.2524550138978,8.5946887897618,15.7057123192139,14.1175557127443,15.0270006690858,16.5073520030592,0,0,0,0,0,0,0,0,0,8.55691290894455,7.25362142011344,6.38578218370682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26399978118577,0,0,0,0,0,0,0,0,0,0,0.34255163915718,8.54495016035667,0.148442139064825,0.346970653532272,0,0,0.150722640552623,0,0,0,0,1.76922110389975,0.161766849947409,2.20841518460394,0,0,0,0,0,1.7972268675888,1.19980546198682,2.92261522268049,0,0,0,0,0,0,0,0,1.7416975885413,0,0,0,0,0,0.452114453507145,0,0,0,0,0,0,0,0,0,0,0,0.398068533636986,0.702213187313235,3.3455227924913,1.70498099637356,0,0,0,0,0.196764231747404,0,0,0,0.350296027101508,0,0,0,0,0.219550115291051,0.268412837520744,0.210289948564127,0,0,0,0,0,0,0,0.22237804384487,0,0.474529061544512,0,0,0.198956472041151,0.58489226135736,0,0,0,0.189667900953082,0.114248512609729,0,0,0,0.0701358198903186,0,0,0,0,0,2.00214126859313,1.76903095601883,1.34917267430912,1.42002084971952,0.72353147925725,0.763877555344259,1.43848068725405,1.45921704097532,0.274561413188081,1.43768206527355,1.11642284300551,0.624075346229121,0,0.179397413521912,0,0.184753190166605,0,0,0,0,0,0,0.195133647857799,0.315270288212382,0.44292937929755,0.318909537314974,1.14704320301017,0.863424909329478,0.433947175744535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0,0,0.316036757935816,0,1.03135543248187,0,0,0,0,0,0.178368817602071,0,0,0.23467170806371,0,0,0,0,0.0603129249281559,0,0,0.291480836629851,0,3.75915937755276,0.412773735926445,2.77791791054568,1.69531611304222,4.10082683163076,3.20289442489132,4.58941760983409,5.45810664062266,4.69879910935041,0,0,0,0,0,0,0.134864346384821,0.0826534557253359,0,0.388844919875379,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0,0,0,9.16432249821717,2.43270258348197,3.3894615864393,2.98817892848929,3.75956060901711,5.56307793387542,7.57231331975804,8.27061352177632,8.27924889574811,8.83998957197998,9.57848758799985,10.622909000633,8.85148943091031,11.92144402252,0.226730383615211,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682934423016537,0,0.419226325255965,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0,0,0.294397840268795,0,0,0,0,0.188218760830661,0.25384382367503,0.182927972872773,0,0.271608227691724,0,0.118635018124174,0.0985044823755635,0.818462086339379,0,0,0,0.233931608445408,0,0,0.441182838239031,0.463735671240843 | |||
|short_description=p3@Treml2 | |||
}} |
Revision as of 14:47, 13 September 2013
Short description: | p3@Treml2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Treml2_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 23bp_to_ENSMUST00000166699_5end |
EntrezGene: | Treml2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 5.99e-17 | 32 |
hematopoietic oligopotent progenitor cell | 5.99e-17 | 32 |
hematopoietic stem cell | 5.99e-17 | 32 |
hematopoietic multipotent progenitor cell | 5.99e-17 | 32 |
hematopoietic lineage restricted progenitor cell | 8.49e-14 | 25 |
lymphoid lineage restricted progenitor cell | 4.01e-11 | 12 |
lymphocyte | 4.45e-10 | 13 |
common lymphoid progenitor | 4.45e-10 | 13 |
connective tissue cell | 6.38e-10 | 46 |
mesenchymal cell | 6.38e-10 | 46 |
T cell | 7.35e-10 | 11 |
pro-T cell | 7.35e-10 | 11 |
common myeloid progenitor | 2.55e-08 | 19 |
mature alpha-beta T cell | 1.10e-07 | 9 |
alpha-beta T cell | 1.10e-07 | 9 |
immature T cell | 1.10e-07 | 9 |
mature T cell | 1.10e-07 | 9 |
immature alpha-beta T cell | 1.10e-07 | 9 |
motile cell | 1.32e-07 | 54 |
megakaryocyte-erythroid progenitor cell | 1.34e-07 | 9 |
leukocyte | 3.78e-07 | 17 |
nongranular leukocyte | 3.78e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
organ system cancer | 8.96e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.