FFCP PHASE1:Hg19::chr18:29523118..29523134,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=22878 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29169 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-19bp_to_uc002kxd.3_5end | |||
|description=CAGE_peak_2_at_TRAPPC8_5end | |||
|id=chr18:29523118..29523134,- | |||
|ontology_enrichment_celltype=CL:0000037!8.38e-20!172;CL:0000566!8.38e-20!172;CL:0002032!4.24e-17!165;CL:0000837!4.24e-17!165;CL:0000738!4.37e-17!140;CL:0000988!7.09e-17!182;CL:0002087!4.33e-14!119;CL:0002031!7.29e-13!124;CL:0000763!2.67e-09!112;CL:0000049!2.67e-09!112;CL:0000838!6.86e-09!52;CL:0000084!1.39e-08!25;CL:0000827!1.39e-08!25;CL:0000791!1.46e-08!18;CL:0000789!1.46e-08!18;CL:0002420!1.46e-08!18;CL:0002419!1.46e-08!18;CL:0000790!1.46e-08!18;CL:0000542!2.01e-08!53;CL:0000051!2.01e-08!53;CL:0000766!5.43e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.75e-09;25!CL:0000791;7.74e-09;18!CL:0000789;7.74e-09;18!CL:0002419;7.74e-09;18!CL:0000860;5.61e-07;33!CL:0002057;5.61e-07;33!CL:0000625;7.38e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,5.58e-20,168;CL:0000738,1.45e-17,136;CL:0002032,3.32e-17,161;CL:0000837,3.32e-17,161;CL:0000988,4.18e-17,177;CL:0002087,1.28e-14,115;CL:0002031,3.86e-13,120;CL:0000763,1.85e-09,108;CL:0000049,1.85e-09,108;CL:0000838,7.05e-09,52;CL:0000084,8.55e-09,25;CL:0000827,8.55e-09,25;CL:0000791,9.01e-09,18;CL:0000789,9.01e-09,18;CL:0002420,9.01e-09,18;CL:0002419,9.01e-09,18;CL:0000790,9.01e-09,18;CL:0000542,2.52e-08,53;CL:0000051,2.52e-08,53;CL:0000766,1.86e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000790;7.74e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.85e-29!115;UBERON:0001049!6.83e-14!57;UBERON:0005068!6.83e-14!57;UBERON:0006241!6.83e-14!57;UBERON:0007135!6.83e-14!57;UBERON:0003080!4.44e-13!42;UBERON:0002780!8.16e-13!41;UBERON:0001890!8.16e-13!41;UBERON:0006240!8.16e-13!41;UBERON:0002616!1.87e-11!59;UBERON:0001017!4.25e-11!82;UBERON:0000073!2.05e-10!94;UBERON:0001016!2.05e-10!94;UBERON:0005743!3.72e-10!86;UBERON:0001893!7.94e-10!34;UBERON:0002020!1.11e-09!34;UBERON:0003528!1.11e-09!34;UBERON:0000955!1.25e-09!69;UBERON:0006238!1.25e-09!69;UBERON:0002791!2.01e-09!33;UBERON:0001869!5.15e-09!32;UBERON:0002346!1.08e-07!90;UBERON:0002390!1.36e-07!102;UBERON:0003061!1.36e-07!102;UBERON:0002619!7.16e-07!22;UBERON:0002193!9.59e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.75e-09;41!UBERON:0001890;1.75e-09;41!UBERON:0007023;6.48e-09;114!UBERON:0000073;1.66e-08;53!UBERON:0002616;1.66e-08;53!UBERON:0003528;3.32e-08;34!UBERON:0002020;3.32e-08;34!UBERON:0001893;3.55e-08;34!UBERON:0002791;4.63e-08;32!UBERON:0001869;6.15e-08;32!UBERON:0002619;9.06e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.79e-29,114;UBERON:0001049,2.31e-14,56;UBERON:0005068,2.31e-14,56;UBERON:0006241,2.31e-14,56;UBERON:0007135,2.31e-14,56;UBERON:0000073,3.51e-14,53;UBERON:0002616,3.51e-14,53;UBERON:0002780,3.93e-13,41;UBERON:0001890,3.93e-13,41;UBERON:0003080,3.93e-13,41;UBERON:0006240,3.93e-13,41;UBERON:0001016,1.47e-11,89;UBERON:0001017,2.56e-11,81;UBERON:0001893,4.69e-10,34;UBERON:0003528,6.63e-10,34;UBERON:0002020,6.63e-10,34;UBERON:0000955,6.76e-10,68;UBERON:0006238,6.76e-10,68;UBERON:0002791,2.96e-09,32;UBERON:0001869,3.22e-09,32;UBERON:0002346,4.74e-08,86;UBERON:0002390,8.00e-08,98;UBERON:0003061,8.00e-08,98;UBERON:0002619,4.94e-07,22;UBERON:0003075,5.17e-07,82;UBERON:0007284,5.17e-07,82 | |||
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| |||
|short_description=p2@TRAPPC8 | |||
}} |
Revision as of 17:13, 11 September 2013
Short description: | p2@TRAPPC8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TRAPPC8_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_uc002kxd.3_5end |
EntrezGene: | TRAPPC8 |
HGNC: | 29169 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 5.58e-20 | 168 |
leukocyte | 1.45e-17 | 136 |
hematopoietic oligopotent progenitor cell | 3.32e-17 | 161 |
hematopoietic multipotent progenitor cell | 3.32e-17 | 161 |
hematopoietic cell | 4.18e-17 | 177 |
nongranular leukocyte | 1.28e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 3.86e-13 | 120 |
myeloid cell | 1.85e-09 | 108 |
common myeloid progenitor | 1.85e-09 | 108 |
lymphoid lineage restricted progenitor cell | 7.05e-09 | 52 |
T cell | 8.55e-09 | 25 |
pro-T cell | 8.55e-09 | 25 |
mature alpha-beta T cell | 9.01e-09 | 18 |
alpha-beta T cell | 9.01e-09 | 18 |
immature T cell | 9.01e-09 | 18 |
mature T cell | 9.01e-09 | 18 |
immature alpha-beta T cell | 9.01e-09 | 18 |
lymphocyte | 2.52e-08 | 53 |
common lymphoid progenitor | 2.52e-08 | 53 |
myeloid leukocyte | 1.86e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.79e-29 | 114 |
neural tube | 2.31e-14 | 56 |
neural rod | 2.31e-14 | 56 |
future spinal cord | 2.31e-14 | 56 |
neural keel | 2.31e-14 | 56 |
regional part of nervous system | 3.51e-14 | 53 |
regional part of brain | 3.51e-14 | 53 |
regional part of forebrain | 3.93e-13 | 41 |
forebrain | 3.93e-13 | 41 |
anterior neural tube | 3.93e-13 | 41 |
future forebrain | 3.93e-13 | 41 |
nervous system | 1.47e-11 | 89 |
central nervous system | 2.56e-11 | 81 |
telencephalon | 4.69e-10 | 34 |
brain grey matter | 6.63e-10 | 34 |
gray matter | 6.63e-10 | 34 |
brain | 6.76e-10 | 68 |
future brain | 6.76e-10 | 68 |
regional part of telencephalon | 2.96e-09 | 32 |
cerebral hemisphere | 3.22e-09 | 32 |
neurectoderm | 4.74e-08 | 86 |
hematopoietic system | 8.00e-08 | 98 |
blood island | 8.00e-08 | 98 |
regional part of cerebral cortex | 4.94e-07 | 22 |
neural plate | 5.17e-07 | 82 |
presumptive neural plate | 5.17e-07 | 82 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.