FFCP PHASE1:Hg19::chr3:62228762..62228795,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5793|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9671|TSSclassifier=N|UniProt=|association_with_transcript=-454bp_to_ENST00000485215_5end|coexpression_cluster_id=C361|description=CAGE_peak_6_at_PTPRG_5end|id=chr3:62228762..62228795,+|ontology_enrichment_celltype=CL:0000047!8.02e-12!8;CL:0000540!4.67e-07!6;CL:0000031!4.67e-07!6;CL:0000404!4.67e-07!6|ontology_enrichment_celltype_v019=CL:0000047;6.21e-11;2|ontology_enrichment_celltype_v019_2=CL:0000047,1.70e-09,8|ontology_enrichment_development_v019=UBERON:0006215;2.95e-15;3!UBERON:0006601;1.28e-14;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.08e-94!82;UBERON:0005743!1.53e-92!86;UBERON:0001049!2.54e-90!57;UBERON:0005068!2.54e-90!57;UBERON:0006241!2.54e-90!57;UBERON:0007135!2.54e-90!57;UBERON:0002616!5.65e-83!59;UBERON:0000073!1.51e-82!94;UBERON:0001016!1.51e-82!94;UBERON:0000955!3.38e-75!69;UBERON:0006238!3.38e-75!69;UBERON:0002780!1.25e-73!41;UBERON:0001890!1.25e-73!41;UBERON:0006240!1.25e-73!41;UBERON:0003080!1.14e-71!42;UBERON:0003075!2.68e-67!86;UBERON:0007284!2.68e-67!86;UBERON:0001869!1.42e-65!32;UBERON:0001893!1.63e-65!34;UBERON:0002020!5.85e-65!34;UBERON:0003528!5.85e-65!34;UBERON:0002346!9.89e-64!90;UBERON:0002791!6.01e-63!33;UBERON:0003056!1.31e-52!61;UBERON:0002619!2.13e-51!22;UBERON:0007023!8.88e-50!115;UBERON:0000956!6.85e-49!25;UBERON:0000203!6.85e-49!25;UBERON:0001950!2.01e-46!20;UBERON:0004121!1.14e-43!169;UBERON:0000033!4.58e-43!123;UBERON:0000924!2.51e-42!173;UBERON:0006601!2.51e-42!173;UBERON:0000153!1.83e-40!129;UBERON:0007811!1.83e-40!129;UBERON:0003076!5.83e-19!15;UBERON:0003057!5.83e-19!15;UBERON:0000025!6.25e-19!194;UBERON:0002420!7.43e-18!9;UBERON:0007245!7.43e-18!9;UBERON:0010009!7.43e-18!9;UBERON:0010011!7.43e-18!9;UBERON:0000454!7.43e-18!9;UBERON:0002308!4.14e-17!9;UBERON:0000125!4.14e-17!9;UBERON:0004733!1.78e-16!12;UBERON:0002028!1.78e-16!12;UBERON:0007277!1.78e-16!12;UBERON:0000200!2.86e-16!6;UBERON:0001871!1.60e-15!7;UBERON:0004732!4.58e-15!13;UBERON:0000349!5.91e-14!5;UBERON:0001872!2.15e-13!5;UBERON:0009663!3.64e-13!7;UBERON:0002021!3.82e-13!5;UBERON:0004111!6.86e-13!241;UBERON:0003296!1.73e-11!4;UBERON:0010133!1.73e-11!4;UBERON:0000483!1.80e-11!309;UBERON:0000119!3.09e-11!312;UBERON:0000369!3.75e-11!4;UBERON:0002435!3.75e-11!4;UBERON:0000204!3.75e-11!4;UBERON:0010082!3.75e-11!4;UBERON:0000064!4.12e-11!219;UBERON:0002298!9.05e-11!8;UBERON:0000477!2.18e-10!286;UBERON:0002680!2.84e-10!9;UBERON:0001895!2.84e-10!9;UBERON:0010092!2.84e-10!9;UBERON:0001894!1.31e-09!7;UBERON:0006222!1.31e-09!7;UBERON:0000475!6.06e-09!365;UBERON:0002771!9.82e-09!3;UBERON:0005383!1.38e-08!3;UBERON:0005382!1.38e-08!3;UBERON:0001896!1.70e-08!3;UBERON:0005290!1.70e-08!3;UBERON:0010096!1.70e-08!3;UBERON:0000988!8.82e-08!3;UBERON:0000007!4.89e-07!2;UBERON:0000481!5.94e-07!347;UBERON:0001870!6.31e-07!2|ontology_enrichment_uberon_v019=UBERON:0002619;8.40e-58;22!UBERON:0001869;4.75e-51;32!UBERON:0000956;1.20e-50;25!UBERON:0000203;1.20e-50;25!UBERON:0001950;6.41e-50;20!UBERON:0002791;8.02e-48;32!UBERON:0001893;9.15e-48;34!UBERON:0003528;3.50e-44;34!UBERON:0002020;3.50e-44;34!UBERON:0000073;4.69e-41;53!UBERON:0002616;4.69e-41;53!UBERON:0002780;2.21e-40;41!UBERON:0001890;2.21e-40;41!UBERON:0000955;4.52e-31;68!UBERON:0001017;3.65e-30;75!UBERON:0000200;5.80e-26;6!UBERON:0001016;5.76e-21;83!UBERON:0000349;7.09e-15;5!UBERON:0001870;1.84e-14;3!UBERON:0002021;3.50e-14;5!UBERON:0001872;5.60e-14;5!UBERON:0001896;1.65e-13;3!UBERON:0005290;1.65e-13;3!UBERON:0004733;3.45e-13;12!UBERON:0002028;3.45e-13;12!UBERON:0004732;3.98e-12;13!UBERON:0007023;1.12e-11;114!UBERON:0003296;4.17e-11;4!UBERON:0010133;4.17e-11;4!UBERON:0000007;9.76e-11;2!UBERON:0001871;3.13e-10;6!UBERON:0002702;4.95e-10;2!UBERON:0001954;5.93e-10;2!UBERON:0003022;5.93e-10;2!UBERON:0002421;5.93e-10;2!UBERON:0002600;5.93e-10;2!UBERON:0002771;1.42e-09;2!UBERON:0011216;3.33e-09;132!UBERON:0002420;2.48e-08;9!UBERON:0007245;2.48e-08;9!UBERON:0010009;2.48e-08;9!UBERON:0010011;2.48e-08;9!UBERON:0000454;2.48e-08;9!UBERON:0002037;7.79e-08;6!UBERON:0002298;5.47e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.03e-72,53;UBERON:0002616,1.03e-72,53;UBERON:0001017,1.46e-70,81;UBERON:0001049,1.61e-68,56;UBERON:0005068,1.61e-68,56;UBERON:0006241,1.61e-68,56;UBERON:0007135,1.61e-68,56;UBERON:0001016,6.83e-63,89;UBERON:0000955,1.58e-62,68;UBERON:0006238,1.58e-62,68;UBERON:0002780,1.29e-60,41;UBERON:0001890,1.29e-60,41;UBERON:0003080,1.29e-60,41;UBERON:0006240,1.29e-60,41;UBERON:0001869,6.70e-60,32;UBERON:0002619,7.14e-58,22;UBERON:0001893,3.53e-56,34;UBERON:0002791,2.96e-54,32;UBERON:0003075,1.79e-51,82;UBERON:0007284,1.79e-51,82;UBERON:0003528,7.19e-51,34;UBERON:0002020,7.19e-51,34;UBERON:0000956,1.04e-50,25;UBERON:0000203,1.04e-50,25;UBERON:0001950,5.38e-50,20;UBERON:0002346,9.01e-49,86;UBERON:0003056,3.00e-46,61;UBERON:0010371,5.09e-42,104;UBERON:0007023,2.95e-38,114;UBERON:0004121,1.54e-35,171;UBERON:0000924,1.54e-35,171;UBERON:0006601,1.54e-35,171;UBERON:0010314,1.61e-31,132;UBERON:0000200,3.57e-26,6;UBERON:0011216,3.25e-22,223;UBERON:0000025,2.67e-15,192;UBERON:0000349,6.73e-15,5;UBERON:0001870,2.84e-14,3;UBERON:0001872,3.45e-14,5;UBERON:0002021,3.97e-14,5;UBERON:0001896,3.72e-13,3;UBERON:0005290,3.72e-13,3;UBERON:0010096,3.72e-13,3;UBERON:0004733,4.95e-13,12;UBERON:0002028,4.95e-13,12;UBERON:0007277,4.95e-13,12;UBERON:0004732,5.55e-12,13;UBERON:0003296,3.65e-11,4;UBERON:0010133,3.65e-11,4;UBERON:0004111,7.00e-11,240;UBERON:0000007,1.00e-10,2;UBERON:0003076,2.65e-10,15;UBERON:0003057,2.65e-10,15;UBERON:0001871,2.67e-10,6;UBERON:0001954,6.08e-10,2;UBERON:0003022,6.08e-10,2;UBERON:0002421,6.08e-10,2;UBERON:0002600,6.08e-10,2;UBERON:0002702,7.62e-10,2;UBERON:0002771,8.33e-10,2;UBERON:0000483,1.84e-09,306;UBERON:0000119,2.67e-09,309;UBERON:0002420,2.14e-08,9;UBERON:0007245,2.14e-08,9;UBERON:0010009,2.14e-08,9;UBERON:0010011,2.14e-08,9;UBERON:0000454,2.14e-08,9;UBERON:0002037,7.45e-08,6;UBERON:0006215,7.45e-08,6;UBERON:0002298,8.10e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580969714347592,1.45125477021519,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43453850447661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,63.2695614313934,18.219579540067,0.773288812777695,1.17261385734044,2.55175500661265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,3.97659059106519,0.984685914873589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87733098438087,2.50473865036998,0,0,0,0,0,0,0,4.82640722538051,0,0,0.885741385813839,0.60298219312704,7.62908681585416,17.4715230691335,7.68423809279223,2.4132393686937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0.404406797884062,0,0.702793337176017,0,0,0,0,0,0.61214552326098,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.23138370497704,0,0,6.39439039154375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80126086612937,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.18091875923721,1.63444087333891,0.160753148465019,0,0,0,0,3.03747783290123,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.43034089983493,1.95242023843141,1.1267183763585,1.14681839138014,1.33114861844223,1.36612086471044,0,0,0,0,0,0,9.99955097414693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65910123382077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.46837815520881,1.41696576325585,1.43670473151436,2.46139637088906,0.252071696221718,1.65977405914123,2.58361033010962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.76904096935418,0.781078098613847,1.44680757550829,1.9024743058172,1.64092442705466,0,0,0,0,0.535701835878287,1.68141861109412,7.28358725083958,8.87882546270061,0,0,0,0.679697329768317,1.71009211263408,0,0,0,4.24212092773205,0,0,0,0,1.85839014859306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0.0771741581079447,0,0,0,0,0.785233868459781,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,1.15585533324555,0.436350690340377,0,0,0,0,0.378499274505237,0.109265571963696,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p6@PTPRG}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=5793 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9671 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-454bp_to_ENST00000485215_5end | |||
|coexpression_cluster_id=C361 | |||
|description=CAGE_peak_6_at_PTPRG_5end | |||
|id=chr3:62228762..62228795,+ | |||
|ontology_enrichment_celltype=CL:0000047!8.02e-12!8;CL:0000540!4.67e-07!6;CL:0000031!4.67e-07!6;CL:0000404!4.67e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000047;6.21e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.70e-09,8 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.95e-15;3!UBERON:0006601;1.28e-14;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.08e-94!82;UBERON:0005743!1.53e-92!86;UBERON:0001049!2.54e-90!57;UBERON:0005068!2.54e-90!57;UBERON:0006241!2.54e-90!57;UBERON:0007135!2.54e-90!57;UBERON:0002616!5.65e-83!59;UBERON:0000073!1.51e-82!94;UBERON:0001016!1.51e-82!94;UBERON:0000955!3.38e-75!69;UBERON:0006238!3.38e-75!69;UBERON:0002780!1.25e-73!41;UBERON:0001890!1.25e-73!41;UBERON:0006240!1.25e-73!41;UBERON:0003080!1.14e-71!42;UBERON:0003075!2.68e-67!86;UBERON:0007284!2.68e-67!86;UBERON:0001869!1.42e-65!32;UBERON:0001893!1.63e-65!34;UBERON:0002020!5.85e-65!34;UBERON:0003528!5.85e-65!34;UBERON:0002346!9.89e-64!90;UBERON:0002791!6.01e-63!33;UBERON:0003056!1.31e-52!61;UBERON:0002619!2.13e-51!22;UBERON:0007023!8.88e-50!115;UBERON:0000956!6.85e-49!25;UBERON:0000203!6.85e-49!25;UBERON:0001950!2.01e-46!20;UBERON:0004121!1.14e-43!169;UBERON:0000033!4.58e-43!123;UBERON:0000924!2.51e-42!173;UBERON:0006601!2.51e-42!173;UBERON:0000153!1.83e-40!129;UBERON:0007811!1.83e-40!129;UBERON:0003076!5.83e-19!15;UBERON:0003057!5.83e-19!15;UBERON:0000025!6.25e-19!194;UBERON:0002420!7.43e-18!9;UBERON:0007245!7.43e-18!9;UBERON:0010009!7.43e-18!9;UBERON:0010011!7.43e-18!9;UBERON:0000454!7.43e-18!9;UBERON:0002308!4.14e-17!9;UBERON:0000125!4.14e-17!9;UBERON:0004733!1.78e-16!12;UBERON:0002028!1.78e-16!12;UBERON:0007277!1.78e-16!12;UBERON:0000200!2.86e-16!6;UBERON:0001871!1.60e-15!7;UBERON:0004732!4.58e-15!13;UBERON:0000349!5.91e-14!5;UBERON:0001872!2.15e-13!5;UBERON:0009663!3.64e-13!7;UBERON:0002021!3.82e-13!5;UBERON:0004111!6.86e-13!241;UBERON:0003296!1.73e-11!4;UBERON:0010133!1.73e-11!4;UBERON:0000483!1.80e-11!309;UBERON:0000119!3.09e-11!312;UBERON:0000369!3.75e-11!4;UBERON:0002435!3.75e-11!4;UBERON:0000204!3.75e-11!4;UBERON:0010082!3.75e-11!4;UBERON:0000064!4.12e-11!219;UBERON:0002298!9.05e-11!8;UBERON:0000477!2.18e-10!286;UBERON:0002680!2.84e-10!9;UBERON:0001895!2.84e-10!9;UBERON:0010092!2.84e-10!9;UBERON:0001894!1.31e-09!7;UBERON:0006222!1.31e-09!7;UBERON:0000475!6.06e-09!365;UBERON:0002771!9.82e-09!3;UBERON:0005383!1.38e-08!3;UBERON:0005382!1.38e-08!3;UBERON:0001896!1.70e-08!3;UBERON:0005290!1.70e-08!3;UBERON:0010096!1.70e-08!3;UBERON:0000988!8.82e-08!3;UBERON:0000007!4.89e-07!2;UBERON:0000481!5.94e-07!347;UBERON:0001870!6.31e-07!2 | |||
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|short_description=p6@PTPRG | |||
}} |
Revision as of 01:07, 13 September 2013
Short description: | p6@PTPRG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_PTPRG_5end |
Coexpression cluster: | C361_Neural_Astrocyte_Neurons_spinal_Chondrocyte_Fibroblast_sacrococcigeal |
Association with transcript: | -454bp_to_ENST00000485215_5end |
EntrezGene: | PTPRG |
HGNC: | 9671 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.70e-09 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.