FFCP PHASE1:Mm9::chr18:31476697..31476782,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=19762|HGNC=|MCL_coexpression_id=1|UniProt=F2Z432,P70425|association_with_transcript=0bp_to_ENSMUST00000139924,NM_009065,uc008ehx.1,uc012bas.1_5end|description=CAGE_peak_1_at_Rit2_5end|id=chr18:31476697..31476782,-|ontology_enrichment_celltype=CL:0000540!1.72e-11!33;CL:0000047!1.72e-11!33;CL:0000031!1.72e-11!33;CL:0000404!1.72e-11!33;CL:0000117!7.43e-11!23;CL:0000337!7.43e-11!23;CL:0002319!5.65e-09!43;CL:0000221!7.16e-09!44;CL:0000133!7.16e-09!44;CL:0000393!1.09e-07!39;CL:0000211!1.09e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.61e-10,23;CL:0000337,2.61e-10,23;CL:0000540,7.85e-10,33;CL:0000047,7.85e-10,33;CL:0000031,7.85e-10,33;CL:0000404,7.85e-10,33;CL:0000393,6.23e-07,39;CL:0000211,6.23e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!7.22e-31!71;UBERON:0003075!7.22e-31!71;UBERON:0007284!7.22e-31!71;UBERON:0001017!1.92e-27!73;UBERON:0005743!1.92e-27!73;UBERON:0000073!2.29e-27!75;UBERON:0001016!2.29e-27!75;UBERON:0004121!3.09e-27!102;UBERON:0000924!3.09e-27!102;UBERON:0006601!3.09e-27!102;UBERON:0000033!1.57e-24!63;UBERON:0001049!1.10e-23!52;UBERON:0005068!1.10e-23!52;UBERON:0006241!1.10e-23!52;UBERON:0007135!1.10e-23!52;UBERON:0000955!1.32e-22!50;UBERON:0006238!1.32e-22!50;UBERON:0002616!5.96e-22!49;UBERON:0003056!2.57e-20!49;UBERON:0003080!2.29e-17!40;UBERON:0002780!1.39e-16!39;UBERON:0001890!1.39e-16!39;UBERON:0006240!1.39e-16!39;UBERON:0002020!1.50e-15!34;UBERON:0002791!1.21e-12!29;UBERON:0003528!1.21e-12!29;UBERON:0001893!1.21e-12!29;UBERON:0000153!9.31e-12!94;UBERON:0007811!2.55e-11!86;UBERON:0000956!6.95e-08!21;UBERON:0001869!6.95e-08!21;UBERON:0000203!6.95e-08!21;UBERON:0002021!7.57e-08!10;UBERON:0000411!7.57e-08!10;UBERON:0001950!7.57e-08!10;UBERON:0002619!1.73e-07!17;UBERON:0003076!5.91e-07!12;UBERON:0003057!5.91e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.86e-28,64;UBERON:0003075,6.86e-28,64;UBERON:0007284,6.86e-28,64;UBERON:0001017,5.26e-25,73;UBERON:0000073,1.27e-24,54;UBERON:0001016,1.87e-24,75;UBERON:0001049,5.64e-23,52;UBERON:0005068,5.64e-23,52;UBERON:0006241,5.64e-23,52;UBERON:0007135,5.64e-23,52;UBERON:0010371,2.46e-22,73;UBERON:0004121,4.76e-22,95;UBERON:0000924,4.76e-22,95;UBERON:0006601,4.76e-22,95;UBERON:0003056,1.73e-20,49;UBERON:0000955,2.77e-19,47;UBERON:0006238,2.77e-19,47;UBERON:0010314,5.02e-19,92;UBERON:0002616,1.43e-18,46;UBERON:0003080,5.02e-17,40;UBERON:0002780,3.74e-16,39;UBERON:0001890,3.74e-16,39;UBERON:0006240,3.74e-16,39;UBERON:0002020,1.96e-15,34;UBERON:0003528,3.84e-12,29;UBERON:0002791,3.84e-12,29;UBERON:0001893,3.84e-12,29;UBERON:0002021,5.84e-09,10;UBERON:0000411,5.84e-09,10;UBERON:0001950,5.84e-09,10;UBERON:0002619,1.62e-07,17;UBERON:0002420,3.23e-07,8;UBERON:0007245,3.23e-07,8;UBERON:0010009,3.23e-07,8;UBERON:0010011,3.23e-07,8;UBERON:0000454,3.23e-07,8;UBERON:0000956,6.89e-07,21;UBERON:0001869,6.89e-07,21;UBERON:0000203,6.89e-07,21|phase1_expression=1.60148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.1962987294292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0.219686182734472,0,0,0,0,0,0,0,0,0,20.2316460859598,28.0365219014177,20.2826049121977,0,0,0,0.988866362566974,0,0.299600110518405,0.768436610643109,0.518448061542388,0.810035629990144,1.26194976810829,50.5602242394732,56.1006094017098,2.69479758272899,1.72521847832825,0.919218786610021,104.610086949419,84.1459557981387,92.9319526200273,21.2336923245612,29.0930706655663,25.5247551572812,104.414441626516,128.309875087223,102.833220753793,45.0781735774712,41.7149024741372,31.5015063444758,0.37863096666592,1.28471652181535,0,0,0,0.539703191637817,0,0,5.33688796500657,0,0,0,0.281686839553361,0,0,0,0,0,0,3.65388415100992,0,18.7037095221679,4.3371331691534,11.2652226975492,4.61230994512117,10.5505848386836,10.1126288136706,4.64966387919799,0,1.44599356919912,0,0,0,0.484875253135222,0,61.1911865754134,41.4704479490641,1.27728527604296,0,0,0,178.999814088763,102.937635634191,21.9895116197513,90.3886464999838,73.6460517111352,145.036055102573,101.725271943484,0.101839363850316,0,0,20.412860020988,1.30120442962704,1.83921683546778,5.22180176435513,4.67184935290717,7.96027040070536,8.71173297936978,9.46387418053261,49.92975055263,0.215567992932842,2.26927296201383,4.57472922826267,1.53437012699302,2.22437799380478,1.39300866608867,0.61734640922383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0.0810688095458557,0,0,0,105.565554179192,22.8448239482011,0,1.05780226665418,0.426576501070468,0.232236671860439,0.902072229254653,1.00841762311671,0.444756087689741,0.760902504450237,0.474529061544512,0.988193728344065,1.00534083520108,2.18852119245266,2.72949721966768,0,1.72910439899755,1.7922714592893,0.569003702859245,1.37098215131675,0,1.01825663922657,0.387904974335251,0.140271639780637,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,164.724905327475,125.885351400026,0,0,4.10160685241134,3.90438744296638,12.4945570685023,0.238968797952552,0.445597348164788,0.566153061577665,1.61924280669958,4.9683495844923,2.37172666767914,58.8018009051907,0.141940085208269,0.35613120733451,0,0,0,0.242780636154981,0,0.377210159511796,0.295301892880773,0.307435147943927,0.258428293168221,0,0.712994756769443,0.632073515871632,0,0,164.091889973326,0.36012218806262,2.58717367565509,4.07240366560025,5.32020700926821,11.4156043265325,14.1512157717824,19.4857567433344,0,0,5.51320995137405,0,0,0,0,0,1.7488850197791,135.175045165662,0,0,0,0,0,0,0,0,0,1.90934123603023,0.316335993581135,0.406638934253697,0.648032044930808,1.25452977608681,1.09181281873089,1.88810084938749,1.81837602595739,1.04702376793612,0.777689839750757,0,0.56369293868419,0,0,0.388902376688095,0.387479470433193,0.675824501963113,0,0,0,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0.453460767230423,0,0,0,2.89784391048286,0,1.83151624267265,0.214368379079066,0,79.0652579663893,80.0965911522488,74.4764167471216,70.975364307943,80.8397373329358,72.5178141494113,77.6275875266577,84.6603862061534,91.9879090237935,90.6080545565685,0.726511433089237,3.19219898720825,2.90247129782028,6.80698807791223,7.33646069197938,5.88299227040045,8.88986911206461,8.65347240403356,14.1204452220399,8.33900798820532,10.8996098952803,11.5062068245506,9.27050923951836,7.49094283136971,7.86865924691902,10.9547548995107,8.69132444586416,7.33055037762079,4.94503080963968,10.1567254892734,9.25746981440622,6.92155644021416,6.91464950847231,7.99405291477807,8.56395361779509,7.61531471025089,10.6098224266208,9.47050961176234,5.56796866768033,7.2948495315506,7.82991119619549,7.48634066054282,8.59385190656348,9.76102099471586,4.24394544158511,11.9909077410214,8.65546951248011,5.80151845930405,4.01705497344571,3.30887128679273,3.01428186306548|short_description=p1@Rit2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:19762 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:F2Z432,uniprot:P70425 | |||
|association_with_transcript=0bp_to_ENSMUST00000139924,NM_009065,uc008ehx.1,uc012bas.1_5end | |||
|cluster_id=chr18:31476697..31476782,- | |||
|description=CAGE_peak_1_at_Rit2_5end | |||
|id=chr18:31476697..31476782,- | |||
|ontology_enrichment_celltype=CL:0000540!1.72e-11!33;CL:0000047!1.72e-11!33;CL:0000031!1.72e-11!33;CL:0000404!1.72e-11!33;CL:0000117!7.43e-11!23;CL:0000337!7.43e-11!23;CL:0002319!5.65e-09!43;CL:0000221!7.16e-09!44;CL:0000133!7.16e-09!44;CL:0000393!1.09e-07!39;CL:0000211!1.09e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.61e-10,23;CL:0000337,2.61e-10,23;CL:0000540,7.85e-10,33;CL:0000047,7.85e-10,33;CL:0000031,7.85e-10,33;CL:0000404,7.85e-10,33;CL:0000393,6.23e-07,39;CL:0000211,6.23e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!7.22e-31!71;UBERON:0003075!7.22e-31!71;UBERON:0007284!7.22e-31!71;UBERON:0001017!1.92e-27!73;UBERON:0005743!1.92e-27!73;UBERON:0000073!2.29e-27!75;UBERON:0001016!2.29e-27!75;UBERON:0004121!3.09e-27!102;UBERON:0000924!3.09e-27!102;UBERON:0006601!3.09e-27!102;UBERON:0000033!1.57e-24!63;UBERON:0001049!1.10e-23!52;UBERON:0005068!1.10e-23!52;UBERON:0006241!1.10e-23!52;UBERON:0007135!1.10e-23!52;UBERON:0000955!1.32e-22!50;UBERON:0006238!1.32e-22!50;UBERON:0002616!5.96e-22!49;UBERON:0003056!2.57e-20!49;UBERON:0003080!2.29e-17!40;UBERON:0002780!1.39e-16!39;UBERON:0001890!1.39e-16!39;UBERON:0006240!1.39e-16!39;UBERON:0002020!1.50e-15!34;UBERON:0002791!1.21e-12!29;UBERON:0003528!1.21e-12!29;UBERON:0001893!1.21e-12!29;UBERON:0000153!9.31e-12!94;UBERON:0007811!2.55e-11!86;UBERON:0000956!6.95e-08!21;UBERON:0001869!6.95e-08!21;UBERON:0000203!6.95e-08!21;UBERON:0002021!7.57e-08!10;UBERON:0000411!7.57e-08!10;UBERON:0001950!7.57e-08!10;UBERON:0002619!1.73e-07!17;UBERON:0003076!5.91e-07!12;UBERON:0003057!5.91e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.86e-28,64;UBERON:0003075,6.86e-28,64;UBERON:0007284,6.86e-28,64;UBERON:0001017,5.26e-25,73;UBERON:0000073,1.27e-24,54;UBERON:0001016,1.87e-24,75;UBERON:0001049,5.64e-23,52;UBERON:0005068,5.64e-23,52;UBERON:0006241,5.64e-23,52;UBERON:0007135,5.64e-23,52;UBERON:0010371,2.46e-22,73;UBERON:0004121,4.76e-22,95;UBERON:0000924,4.76e-22,95;UBERON:0006601,4.76e-22,95;UBERON:0003056,1.73e-20,49;UBERON:0000955,2.77e-19,47;UBERON:0006238,2.77e-19,47;UBERON:0010314,5.02e-19,92;UBERON:0002616,1.43e-18,46;UBERON:0003080,5.02e-17,40;UBERON:0002780,3.74e-16,39;UBERON:0001890,3.74e-16,39;UBERON:0006240,3.74e-16,39;UBERON:0002020,1.96e-15,34;UBERON:0003528,3.84e-12,29;UBERON:0002791,3.84e-12,29;UBERON:0001893,3.84e-12,29;UBERON:0002021,5.84e-09,10;UBERON:0000411,5.84e-09,10;UBERON:0001950,5.84e-09,10;UBERON:0002619,1.62e-07,17;UBERON:0002420,3.23e-07,8;UBERON:0007245,3.23e-07,8;UBERON:0010009,3.23e-07,8;UBERON:0010011,3.23e-07,8;UBERON:0000454,3.23e-07,8;UBERON:0000956,6.89e-07,21;UBERON:0001869,6.89e-07,21;UBERON:0000203,6.89e-07,21 | |||
|phase1_expression=1.60148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.1962987294292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0.219686182734472,0,0,0,0,0,0,0,0,0,20.2316460859598,28.0365219014177,20.2826049121977,0,0,0,0.988866362566974,0,0.299600110518405,0.768436610643109,0.518448061542388,0.810035629990144,1.26194976810829,50.5602242394732,56.1006094017098,2.69479758272899,1.72521847832825,0.919218786610021,104.610086949419,84.1459557981387,92.9319526200273,21.2336923245612,29.0930706655663,25.5247551572812,104.414441626516,128.309875087223,102.833220753793,45.0781735774712,41.7149024741372,31.5015063444758,0.37863096666592,1.28471652181535,0,0,0,0.539703191637817,0,0,5.33688796500657,0,0,0,0.281686839553361,0,0,0,0,0,0,3.65388415100992,0,18.7037095221679,4.3371331691534,11.2652226975492,4.61230994512117,10.5505848386836,10.1126288136706,4.64966387919799,0,1.44599356919912,0,0,0,0.484875253135222,0,61.1911865754134,41.4704479490641,1.27728527604296,0,0,0,178.999814088763,102.937635634191,21.9895116197513,90.3886464999838,73.6460517111352,145.036055102573,101.725271943484,0.101839363850316,0,0,20.412860020988,1.30120442962704,1.83921683546778,5.22180176435513,4.67184935290717,7.96027040070536,8.71173297936978,9.46387418053261,49.92975055263,0.215567992932842,2.26927296201383,4.57472922826267,1.53437012699302,2.22437799380478,1.39300866608867,0.61734640922383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0.0810688095458557,0,0,0,105.565554179192,22.8448239482011,0,1.05780226665418,0.426576501070468,0.232236671860439,0.902072229254653,1.00841762311671,0.444756087689741,0.760902504450237,0.474529061544512,0.988193728344065,1.00534083520108,2.18852119245266,2.72949721966768,0,1.72910439899755,1.7922714592893,0.569003702859245,1.37098215131675,0,1.01825663922657,0.387904974335251,0.140271639780637,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,164.724905327475,125.885351400026,0,0,4.10160685241134,3.90438744296638,12.4945570685023,0.238968797952552,0.445597348164788,0.566153061577665,1.61924280669958,4.9683495844923,2.37172666767914,58.8018009051907,0.141940085208269,0.35613120733451,0,0,0,0.242780636154981,0,0.377210159511796,0.295301892880773,0.307435147943927,0.258428293168221,0,0.712994756769443,0.632073515871632,0,0,164.091889973326,0.36012218806262,2.58717367565509,4.07240366560025,5.32020700926821,11.4156043265325,14.1512157717824,19.4857567433344,0,0,5.51320995137405,0,0,0,0,0,1.7488850197791,135.175045165662,0,0,0,0,0,0,0,0,0,1.90934123603023,0.316335993581135,0.406638934253697,0.648032044930808,1.25452977608681,1.09181281873089,1.88810084938749,1.81837602595739,1.04702376793612,0.777689839750757,0,0.56369293868419,0,0,0.388902376688095,0.387479470433193,0.675824501963113,0,0,0,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0.453460767230423,0,0,0,2.89784391048286,0,1.83151624267265,0.214368379079066,0,79.0652579663893,80.0965911522488,74.4764167471216,70.975364307943,80.8397373329358,72.5178141494113,77.6275875266577,84.6603862061534,91.9879090237935,90.6080545565685,0.726511433089237,3.19219898720825,2.90247129782028,6.80698807791223,7.33646069197938,5.88299227040045,8.88986911206461,8.65347240403356,14.1204452220399,8.33900798820532,10.8996098952803,11.5062068245506,9.27050923951836,7.49094283136971,7.86865924691902,10.9547548995107,8.69132444586416,7.33055037762079,4.94503080963968,10.1567254892734,9.25746981440622,6.92155644021416,6.91464950847231,7.99405291477807,8.56395361779509,7.61531471025089,10.6098224266208,9.47050961176234,5.56796866768033,7.2948495315506,7.82991119619549,7.48634066054282,8.59385190656348,9.76102099471586,4.24394544158511,11.9909077410214,8.65546951248011,5.80151845930405,4.01705497344571,3.30887128679273,3.01428186306548 | |||
|short_description=p1@Rit2 | |||
}} |
Revision as of 15:03, 5 August 2015
Short description: | p1@Rit2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rit2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000139924, NM_009065, uc008ehx.1, uc012bas.1_5end |
EntrezGene: | 19762 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.61e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.61e-10 | 23 |
neuron | 7.85e-10 | 33 |
neuronal stem cell | 7.85e-10 | 33 |
neuroblast | 7.85e-10 | 33 |
electrically signaling cell | 7.85e-10 | 33 |
electrically responsive cell | 6.23e-07 | 39 |
electrically active cell | 6.23e-07 | 39 |