FFCP PHASE1:Mm9::chr5:112657920..112657946,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=330166|HGNC=|UniProt=|association_with_transcript=21bp_to_ENSMUST00000146058,NR_003718,NR_033657,uc008ysk.2,uc008ysl.2,uc008ysm.2,uc008ysn.2,uc008yso.2,uc008ysp.2,uc008ysq.2,uc008ysr.2,uc008yss.2,uc012ebf.1_5end|description=CAGE_peak_4_at_Miat_5end|id=chr5:112657920..112657946,-|ontology_enrichment_celltype=CL:0000540!5.13e-23!33;CL:0000047!5.13e-23!33;CL:0000031!5.13e-23!33;CL:0000404!5.13e-23!33;CL:0000117!6.44e-18!23;CL:0000337!6.44e-18!23;CL:0000393!1.64e-17!39;CL:0000211!1.64e-17!39;CL:0000221!6.13e-15!44;CL:0000133!6.13e-15!44;CL:0002319!9.58e-15!43;CL:0000055!4.66e-11!50|ontology_enrichment_celltype_v019_2=CL:0000540,3.75e-23,33;CL:0000047,3.75e-23,33;CL:0000031,3.75e-23,33;CL:0000404,3.75e-23,33;CL:0000117,1.28e-21,23;CL:0000337,1.28e-21,23;CL:0000393,1.23e-18,39;CL:0000211,1.23e-18,39;CL:0002319,2.48e-16,43;CL:0000221,8.00e-16,44;CL:0000133,8.00e-16,44;CL:0002321,8.53e-08,70;CL:0002609,1.48e-07,6;CL:0002613,4.73e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.07e-29!73;UBERON:0005743!8.07e-29!73;UBERON:0000073!1.82e-27!75;UBERON:0001016!1.82e-27!75;UBERON:0004121!2.57e-25!102;UBERON:0000924!2.57e-25!102;UBERON:0006601!2.57e-25!102;UBERON:0002346!1.03e-24!71;UBERON:0003075!1.03e-24!71;UBERON:0007284!1.03e-24!71;UBERON:0003056!2.35e-24!49;UBERON:0000033!2.24e-23!63;UBERON:0001049!6.43e-21!52;UBERON:0005068!6.43e-21!52;UBERON:0006241!6.43e-21!52;UBERON:0007135!6.43e-21!52;UBERON:0003080!1.81e-19!40;UBERON:0000955!2.25e-19!50;UBERON:0006238!2.25e-19!50;UBERON:0002780!4.69e-19!39;UBERON:0001890!4.69e-19!39;UBERON:0006240!4.69e-19!39;UBERON:0002616!5.06e-19!49;UBERON:0002020!1.27e-18!34;UBERON:0002791!2.25e-15!29;UBERON:0003528!2.25e-15!29;UBERON:0001893!2.25e-15!29;UBERON:0007811!1.97e-12!86;UBERON:0000153!1.25e-11!94;UBERON:0000956!4.38e-11!21;UBERON:0001869!4.38e-11!21;UBERON:0000203!4.38e-11!21;UBERON:0002619!1.35e-08!17;UBERON:0002021!9.11e-07!10;UBERON:0000411!9.11e-07!10;UBERON:0001950!9.11e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0003056,3.44e-30,49;UBERON:0004121,2.52e-28,95;UBERON:0000924,2.52e-28,95;UBERON:0006601,2.52e-28,95;UBERON:0002346,7.22e-28,64;UBERON:0003075,7.22e-28,64;UBERON:0007284,7.22e-28,64;UBERON:0001017,2.51e-25,73;UBERON:0001016,2.12e-24,75;UBERON:0010371,2.70e-23,73;UBERON:0002780,1.18e-21,39;UBERON:0001890,1.18e-21,39;UBERON:0006240,1.18e-21,39;UBERON:0000073,3.05e-21,54;UBERON:0003080,6.02e-21,40;UBERON:0002020,7.12e-21,34;UBERON:0001049,3.28e-19,52;UBERON:0005068,3.28e-19,52;UBERON:0006241,3.28e-19,52;UBERON:0007135,3.28e-19,52;UBERON:0003528,1.21e-18,29;UBERON:0002791,1.21e-18,29;UBERON:0001893,1.21e-18,29;UBERON:0002616,2.33e-17,46;UBERON:0000955,7.50e-17,47;UBERON:0006238,7.50e-17,47;UBERON:0010314,1.35e-16,92;UBERON:0000956,5.12e-12,21;UBERON:0001869,5.12e-12,21;UBERON:0000203,5.12e-12,21;UBERON:0002619,3.95e-11,17;UBERON:0000970,2.18e-10,9;UBERON:0000019,2.18e-10,9;UBERON:0000047,2.18e-10,9;UBERON:0010312,2.18e-10,9;UBERON:0004088,2.18e-10,9;UBERON:0002104,2.18e-10,9;UBERON:0001456,2.18e-10,9;UBERON:0003072,2.18e-10,9;UBERON:0004128,2.18e-10,9;UBERON:0003071,2.18e-10,9;UBERON:0001444,2.97e-08,11;UBERON:0002021,3.65e-08,10;UBERON:0000411,3.65e-08,10;UBERON:0001950,3.65e-08,10;UBERON:0002420,4.87e-08,8;UBERON:0007245,4.87e-08,8;UBERON:0010009,4.87e-08,8;UBERON:0010011,4.87e-08,8;UBERON:0000454,4.87e-08,8;UBERON:0000020,1.87e-07,12;UBERON:0001032,1.87e-07,12;UBERON:0004456,1.87e-07,12;UBERON:0000033,8.82e-07,13;UBERON:0005085,8.82e-07,13|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63011399117477,4.7609188134483,1.26766280701236,0,0,0,0,0,0,0,1.34796496001021,1.4850653216486,0.841299845405528,1.14260393761521,0.441737081903227,1.34739879136449,2.30029130443767,5.51531271966013,1.10115880999389,1.0214987046815,0.614426133024974,5.80299666012853,3.20206752608434,3.12548022334056,0.279182999001381,2.8138130501584,1.22238598221448,1.47314292736834,1.85083185038834,0.931997229126503,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0.301445281105245,0.23517741427141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449371918214468,0,1.00523481690292,0.869121600961382,1.02286182932132,1.66230435647648,2.10913641988085,0,0,0,0,1.17108398666433,2.06911893990126,4.86167750474443,4.37043971723574,9.25296388458059,6.40568601424249,5.05989312622536,0,0.215567992932842,0.189106080167819,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,1.85228302282712,0,0,0.213288250535234,0.464473343720877,0.38660238396628,0,0,0,0,0,0.251335208800269,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.468846746368813,0,0,0.315508219416257,0.390438744296638,1.07711698866399,0.238968797952552,1.33679204449436,1.13230612315533,0.809621403349789,1.75353514746787,1.58115111178609,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680879211507576,2.16073312837572,1.94038025674132,1.28602221018955,0,0.356737635204141,0.493647061806363,0,0.23467170806371,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.216010681643603,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,2.30162618253588,1.71868654031819,1.3748254587495,2.74033007908257,0,0.675022500231806,1.35096360967266,0.453142408984205,1.55328093525546,0.62272408550506,1.19707462020309,2.04880326904961,0.729320151204882,0.628839487883947,0.919217542250071,0,0.412070114477788,0.64183841918363,0.758091635291392,1.01391719956096,1.50901073108861,0.187283014939765,0.384150914429216,0.34461281373368,0.952587382566147,0.115884325944855,1.15745532278223,0,0.588795680537589,0.685738504770831,0.354951612318675,0.953744759789284,1.16277133305863,0.752875043322645,0.676916863133412,0.365855945745545,0.526139422875686,1.35804113845862,0,0.593175090620871,0.689531376628944,0.818462086339379,0.309873682371932,0.192906610981141,0.749431733813838,0,0.859484216193193,0,0,0.231867835620421|short_description=p4@Miat}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:330166 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=21bp_to_ENSMUST00000146058,NR_003718,NR_033657,uc008ysk.2,uc008ysl.2,uc008ysm.2,uc008ysn.2,uc008yso.2,uc008ysp.2,uc008ysq.2,uc008ysr.2,uc008yss.2,uc012ebf.1_5end | |||
|cluster_id=chr5:112657920..112657946,- | |||
|description=CAGE_peak_4_at_Miat_5end | |||
|id=chr5:112657920..112657946,- | |||
|ontology_enrichment_celltype=CL:0000540!5.13e-23!33;CL:0000047!5.13e-23!33;CL:0000031!5.13e-23!33;CL:0000404!5.13e-23!33;CL:0000117!6.44e-18!23;CL:0000337!6.44e-18!23;CL:0000393!1.64e-17!39;CL:0000211!1.64e-17!39;CL:0000221!6.13e-15!44;CL:0000133!6.13e-15!44;CL:0002319!9.58e-15!43;CL:0000055!4.66e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.75e-23,33;CL:0000047,3.75e-23,33;CL:0000031,3.75e-23,33;CL:0000404,3.75e-23,33;CL:0000117,1.28e-21,23;CL:0000337,1.28e-21,23;CL:0000393,1.23e-18,39;CL:0000211,1.23e-18,39;CL:0002319,2.48e-16,43;CL:0000221,8.00e-16,44;CL:0000133,8.00e-16,44;CL:0002321,8.53e-08,70;CL:0002609,1.48e-07,6;CL:0002613,4.73e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.07e-29!73;UBERON:0005743!8.07e-29!73;UBERON:0000073!1.82e-27!75;UBERON:0001016!1.82e-27!75;UBERON:0004121!2.57e-25!102;UBERON:0000924!2.57e-25!102;UBERON:0006601!2.57e-25!102;UBERON:0002346!1.03e-24!71;UBERON:0003075!1.03e-24!71;UBERON:0007284!1.03e-24!71;UBERON:0003056!2.35e-24!49;UBERON:0000033!2.24e-23!63;UBERON:0001049!6.43e-21!52;UBERON:0005068!6.43e-21!52;UBERON:0006241!6.43e-21!52;UBERON:0007135!6.43e-21!52;UBERON:0003080!1.81e-19!40;UBERON:0000955!2.25e-19!50;UBERON:0006238!2.25e-19!50;UBERON:0002780!4.69e-19!39;UBERON:0001890!4.69e-19!39;UBERON:0006240!4.69e-19!39;UBERON:0002616!5.06e-19!49;UBERON:0002020!1.27e-18!34;UBERON:0002791!2.25e-15!29;UBERON:0003528!2.25e-15!29;UBERON:0001893!2.25e-15!29;UBERON:0007811!1.97e-12!86;UBERON:0000153!1.25e-11!94;UBERON:0000956!4.38e-11!21;UBERON:0001869!4.38e-11!21;UBERON:0000203!4.38e-11!21;UBERON:0002619!1.35e-08!17;UBERON:0002021!9.11e-07!10;UBERON:0000411!9.11e-07!10;UBERON:0001950!9.11e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,3.44e-30,49;UBERON:0004121,2.52e-28,95;UBERON:0000924,2.52e-28,95;UBERON:0006601,2.52e-28,95;UBERON:0002346,7.22e-28,64;UBERON:0003075,7.22e-28,64;UBERON:0007284,7.22e-28,64;UBERON:0001017,2.51e-25,73;UBERON:0001016,2.12e-24,75;UBERON:0010371,2.70e-23,73;UBERON:0002780,1.18e-21,39;UBERON:0001890,1.18e-21,39;UBERON:0006240,1.18e-21,39;UBERON:0000073,3.05e-21,54;UBERON:0003080,6.02e-21,40;UBERON:0002020,7.12e-21,34;UBERON:0001049,3.28e-19,52;UBERON:0005068,3.28e-19,52;UBERON:0006241,3.28e-19,52;UBERON:0007135,3.28e-19,52;UBERON:0003528,1.21e-18,29;UBERON:0002791,1.21e-18,29;UBERON:0001893,1.21e-18,29;UBERON:0002616,2.33e-17,46;UBERON:0000955,7.50e-17,47;UBERON:0006238,7.50e-17,47;UBERON:0010314,1.35e-16,92;UBERON:0000956,5.12e-12,21;UBERON:0001869,5.12e-12,21;UBERON:0000203,5.12e-12,21;UBERON:0002619,3.95e-11,17;UBERON:0000970,2.18e-10,9;UBERON:0000019,2.18e-10,9;UBERON:0000047,2.18e-10,9;UBERON:0010312,2.18e-10,9;UBERON:0004088,2.18e-10,9;UBERON:0002104,2.18e-10,9;UBERON:0001456,2.18e-10,9;UBERON:0003072,2.18e-10,9;UBERON:0004128,2.18e-10,9;UBERON:0003071,2.18e-10,9;UBERON:0001444,2.97e-08,11;UBERON:0002021,3.65e-08,10;UBERON:0000411,3.65e-08,10;UBERON:0001950,3.65e-08,10;UBERON:0002420,4.87e-08,8;UBERON:0007245,4.87e-08,8;UBERON:0010009,4.87e-08,8;UBERON:0010011,4.87e-08,8;UBERON:0000454,4.87e-08,8;UBERON:0000020,1.87e-07,12;UBERON:0001032,1.87e-07,12;UBERON:0004456,1.87e-07,12;UBERON:0000033,8.82e-07,13;UBERON:0005085,8.82e-07,13 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63011399117477,4.7609188134483,1.26766280701236,0,0,0,0,0,0,0,1.34796496001021,1.4850653216486,0.841299845405528,1.14260393761521,0.441737081903227,1.34739879136449,2.30029130443767,5.51531271966013,1.10115880999389,1.0214987046815,0.614426133024974,5.80299666012853,3.20206752608434,3.12548022334056,0.279182999001381,2.8138130501584,1.22238598221448,1.47314292736834,1.85083185038834,0.931997229126503,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0.301445281105245,0.23517741427141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449371918214468,0,1.00523481690292,0.869121600961382,1.02286182932132,1.66230435647648,2.10913641988085,0,0,0,0,1.17108398666433,2.06911893990126,4.86167750474443,4.37043971723574,9.25296388458059,6.40568601424249,5.05989312622536,0,0.215567992932842,0.189106080167819,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,1.85228302282712,0,0,0.213288250535234,0.464473343720877,0.38660238396628,0,0,0,0,0,0.251335208800269,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.468846746368813,0,0,0.315508219416257,0.390438744296638,1.07711698866399,0.238968797952552,1.33679204449436,1.13230612315533,0.809621403349789,1.75353514746787,1.58115111178609,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680879211507576,2.16073312837572,1.94038025674132,1.28602221018955,0,0.356737635204141,0.493647061806363,0,0.23467170806371,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.216010681643603,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,2.30162618253588,1.71868654031819,1.3748254587495,2.74033007908257,0,0.675022500231806,1.35096360967266,0.453142408984205,1.55328093525546,0.62272408550506,1.19707462020309,2.04880326904961,0.729320151204882,0.628839487883947,0.919217542250071,0,0.412070114477788,0.64183841918363,0.758091635291392,1.01391719956096,1.50901073108861,0.187283014939765,0.384150914429216,0.34461281373368,0.952587382566147,0.115884325944855,1.15745532278223,0,0.588795680537589,0.685738504770831,0.354951612318675,0.953744759789284,1.16277133305863,0.752875043322645,0.676916863133412,0.365855945745545,0.526139422875686,1.35804113845862,0,0.593175090620871,0.689531376628944,0.818462086339379,0.309873682371932,0.192906610981141,0.749431733813838,0,0.859484216193193,0,0,0.231867835620421 | |||
|short_description=p4@Miat | |||
}} |
Revision as of 00:58, 6 August 2015
Short description: | p4@Miat |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Miat_5end |
Coexpression cluster: | NA |
Association with transcript: | 21bp_to_ENSMUST00000146058, NR_003718, NR_033657, uc008ysk.2, uc008ysl.2, uc008ysm.2, uc008ysn.2, uc008yso.2, uc008ysp.2, uc008ysq.2, uc008ysr.2, uc008yss.2, uc012ebf.1_5end |
EntrezGene: | 330166 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.75e-23 | 33 |
neuronal stem cell | 3.75e-23 | 33 |
neuroblast | 3.75e-23 | 33 |
electrically signaling cell | 3.75e-23 | 33 |
CNS neuron (sensu Vertebrata) | 1.28e-21 | 23 |
neuroblast (sensu Vertebrata) | 1.28e-21 | 23 |
electrically responsive cell | 1.23e-18 | 39 |
electrically active cell | 1.23e-18 | 39 |
neural cell | 2.48e-16 | 43 |
ectodermal cell | 8.00e-16 | 44 |
neurectodermal cell | 8.00e-16 | 44 |
embryonic cell | 8.53e-08 | 70 |
neuron of cerebral cortex | 1.48e-07 | 6 |
striatum neuron | 4.73e-07 | 3 |