FFCP PHASE1:Hg19::chr12:65004194..65004235,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=283349|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14271|TSSclassifier=S|UniProt=Q86WH2,Q496A9|association_with_transcript=-57bp_to_ENST00000283172,ENST00000336061,ENST00000541539,ENST00000542104,NM_178169,NR_040718,uc001ssd.2,uc009zqn.2_5end|coexpression_cluster_id=C2|description=CAGE_peak_2_at_RASSF3_5end|id=chr12:65004194..65004235,+|ontology_enrichment_celltype=CL:0000738!1.35e-38!140;CL:0000037!1.78e-34!172;CL:0000566!1.78e-34!172;CL:0002032!3.06e-34!165;CL:0000837!3.06e-34!165;CL:0002087!9.78e-34!119;CL:0000988!1.70e-33!182;CL:0002031!1.20e-30!124;CL:0000766!6.47e-21!76;CL:0000763!9.77e-19!112;CL:0000049!9.77e-19!112;CL:0000557!3.78e-18!71;CL:0002009!7.42e-18!65;CL:0002194!1.53e-17!63;CL:0000576!1.53e-17!63;CL:0000040!1.53e-17!63;CL:0000559!1.53e-17!63;CL:0002057!1.04e-16!42;CL:0000839!2.28e-15!70;CL:0000838!8.23e-15!52;CL:0000542!9.00e-15!53;CL:0000051!9.00e-15!53;CL:0000860!1.26e-14!45;CL:0000791!8.94e-09!18;CL:0000789!8.94e-09!18;CL:0002420!8.94e-09!18;CL:0002419!8.94e-09!18;CL:0000790!8.94e-09!18;CL:0000945!8.63e-08!24;CL:0000826!8.63e-08!24;CL:0000084!1.19e-07!25;CL:0000827!1.19e-07!25|ontology_enrichment_celltype_v019=CL:0000860;2.32e-14;33!CL:0002057;2.32e-14;33!CL:0000473;4.30e-14;39!CL:0000234;4.30e-14;39!CL:0000576;3.92e-11;48!CL:0002087;1.81e-10;104!CL:0000766;9.68e-10;69!CL:0000738;2.84e-09;136!CL:0000542;6.23e-09;53!CL:0000791;8.04e-09;18!CL:0000789;8.04e-09;18!CL:0002419;8.04e-09;18!CL:0000945;6.84e-08;24!CL:0000084;1.43e-07;25|ontology_enrichment_celltype_v019_2=CL:0000738,3.50e-40,136;CL:0000037,1.07e-35,168;CL:0002032,1.68e-35,161;CL:0000837,1.68e-35,161;CL:0002087,2.22e-35,115;CL:0000988,2.86e-34,177;CL:0002031,3.94e-32,120;CL:0000766,1.49e-22,72;CL:0000763,8.01e-20,108;CL:0000049,8.01e-20,108;CL:0000557,1.10e-19,67;CL:0002009,1.71e-19,61;CL:0002194,3.37e-19,59;CL:0000576,3.37e-19,59;CL:0000040,3.37e-19,59;CL:0000559,3.37e-19,59;CL:0000473,8.01e-19,48;CL:0000234,8.01e-19,48;CL:0000839,9.76e-17,66;CL:0000860,1.04e-16,42;CL:0002057,1.04e-16,42;CL:0000838,8.21e-15,52;CL:0000542,8.98e-15,53;CL:0000051,8.98e-15,53;CL:0000791,8.93e-09,18;CL:0000789,8.93e-09,18;CL:0002420,8.93e-09,18;CL:0002419,8.93e-09,18;CL:0000790,8.93e-09,18;CL:0000945,8.62e-08,24;CL:0000826,8.62e-08,24;CL:0000084,1.19e-07,25;CL:0000827,1.19e-07,25|ontology_enrichment_development_v019=CL:0002057;2.58e-12;42!CL:0000051;6.23e-09;53!CL:0000790;8.04e-09;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.49e-21!112;UBERON:0002390!1.30e-20!102;UBERON:0003061!1.30e-20!102;UBERON:0002371!2.60e-13!80;UBERON:0003081!6.89e-13!216;UBERON:0001474!8.72e-12!86;UBERON:0002405!2.35e-10!115;UBERON:0004765!5.23e-08!101;UBERON:0001434!5.23e-08!101;UBERON:0000178!5.44e-08!15;UBERON:0000179!5.44e-08!15;UBERON:0000463!5.44e-08!15|ontology_enrichment_uberon_v019=UBERON:0000178;6.89e-08;15!UBERON:0000179;6.89e-08;15!UBERON:0000463;6.89e-08;15|ontology_enrichment_uberon_v019_2=UBERON:0002193,9.36e-23,108;UBERON:0002390,7.23e-22,98;UBERON:0003061,7.23e-22,98;UBERON:0002405,1.50e-16,93;UBERON:0003081,2.18e-14,203;UBERON:0002371,2.22e-14,76;UBERON:0001474,1.08e-12,82;UBERON:0004765,8.26e-09,90;UBERON:0000178,5.43e-08,15;UBERON:0000179,5.43e-08,15;UBERON:0000463,5.43e-08,15;UBERON:0001434,2.44e-07,100;UBERON:0000926,3.11e-07,315;UBERON:0004120,3.11e-07,315;UBERON:0006603,3.11e-07,315|phase1_expression=3.08853244759946,2.78330681058278,2.39622486963151,3.00219895059391,3.5756887554183,2.61701557230111,5.06599756336621,1.26343974685366,1.56711376919903,7.12628415854376,4.88460817580699,5.46103430325431,3.4289707169699,0.618831764800233,0.994192127183747,3.36162573225888,2.41077811209591,2.92124036154949,5.36726078669558,3.69363174230364,5.30401797235058,3.44800193625897,1.43117993565528,2.46373965131192,3.76627918784408,10.0865695587296,7.63535481884495,9.36658297632783,9.04737836752479,7.29275856384704,12.0756576186539,2.75826367343678,5.12050061923025,2.9580320813343,6.66217924990594,8.81449241422014,4.69760702935756,14.4038806218288,8.62341124121609,12.8036413722353,13.2110129801555,17.8141516310439,20.0908942754665,18.1747798474456,18.1380452970629,20.3770611397766,11.8538808821899,11.9238687526329,11.4591357231188,12.6584652621746,21.5174993484445,10.8781825748749,23.4427062900901,25.1739026597692,9.47985406160392,12.9887214284397,14.191119803008,7.64059847113288,19.8954530041087,19.5766706516417,17.9014395223732,23.4194423132568,22.1404659960011,22.1636870277001,10.7377418292576,23.2627942123367,9.34233373493363,12.8136819280939,20.8593167368081,9.55630916702513,12.1079900526674,12.5214396235772,12.6584954976354,8.66146673878961,7.86635909870661,9.22498040236854,10.89587722121,15.7685737483582,17.1976377765876,4.56020389985998,7.55883373356542,8.40255107317316,8.79981222306614,25.6685147293202,18.6796943311347,17.0692089026603,16.4162354684765,19.5415829584524,13.2208974556972,17.17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4805861502613,3.59865710022669,1.50940741051545,2.66943366478961,4.34796129954155,3.32708032279126,1.39893480524502,3.84423389973048,5.89398038505699,5.84744045812686,6.36578123192664,3.31764966272684,6.11435943483388,6.26094074174081,3.45592500693602,4.18885733385675,4.06870733204662,6.00100575368446,4.94088562395447,8.35260767781289,7.16572599657509,1.20008329398946,1.03018711554838,1.34699795506368,12.6184898228651,17.14316490625,7.93433888087225,4.17590867144339,5.44094221229454,1.389134845943,4.16052397660995,5.01448755028165,5.24962460173653,3.50854479325931,3.7104720648635,5.40159307158561,6.58875518546983,2.04993214870357,3.10887307558079,3.03859956177382,2.35039341457942,11.1070376038451,18.9996721648109,30.423163331587,2.94848863961771,7.6189601713653,9.50904555113822,6.39959666735776,2.66729324235352,2.06657975592979,4.54012762853469,2.02516545277025,5.87493932421667,4.35454082023081,4.85998610953876,6.46948868380091,8.8068927439302,4.80522408044861,3.22491806912648,2.55089904122019,9.17124655516616,8.9383186875719,4.45206090914786,9.54227114515166,0,3.17408349321616,4.593682160298,1.92687675289379,2.8339315265117,1.91560630868582,2.05116364240755,1.51243017733031,3.1120763608898,2.09918339321406,5.71077681036618,1.57036349601641,4.60081921056187,1.83428598521679,7.27811696747131,4.19520305013884,20.0204378557429,3.38157577597667,5.79119528289281,4.63921658018096,3.90757005616546,19.3810953916253,2.62035068016155,6.2099556211159,2.16120270778863,0.781078098613847,1.65349437200947,2.34638497717455,1.09394961803644,7.67560873600055,8.9318012110073,2.98981115411355,2.55524855279191,1.60710550763486,1.00885116665647,1.82089681270989,2.95960848756687,9.1363441267518,10.1405909049086,6.5165443586219,1.97112225632812,2.17050152757402,8.39176270276174,5.22787588892725,10.989032999072,0.942693539496011,8.12789273609988,10.9579046461139,4.31855182437243,5.7330202546446,6.36141243172241,2.21219056425817,4.53341558935688,2.26015753993353,3.20684545892101,3.52267479077163,1.87790324803345,0.691259661814092,11.1859113293272,5.91660003652827,6.6466455712143,5.08064460229115,4.1239236337929,4.34288939930048,2.8666168169323,1.00669888618013,4.80936144714691,5.85206039914893,1.94228651156368,3.2852098193999,4.6392577253528,2.91426595835484,6.08242605001475,3.18321240258189,4.63788354032517,9.26157872719472,1.20934568419972,6.49140227336696,7.9489382851183,5.02686989159102,1.88126918544609,23.7793872101288,33.4660696884309,2.35570160537934,9.50548481046675,2.113278637917,5.09781344063451,17.4810087442528,11.6024198352439,13.5919972057903,2.32120120187355,2.11736923029415,4.01206833445841,10.9550458236978,7.33966853447265,3.72682916193773,5.52200467676146,2.58367662725476,1.74540276136151,3.7031878836078,3.34795516350076,2.31087814315709,2.16313281061895,8.83164973845552,6.44666874585804,7.98200556372053,5.609385635809,4.27547848424897,6.61643276650883,3.0084904715085,7.27475502895098,6.16317499359211,6.63335551567024,3.82702084689012,2.77204176471275,3.57096647195611,5.61923515573253,4.84182771507692,5.94298871677251,2.73682780596109,1.41482032270754,3.48346796635138,4.44903291410865,11.6519051715236,6.95705392308961,4.32458463509817,3.66314708749385,5.44309463976349,3.8614456457388,4.85056091375569,11.7320471201727,10.7572470880922,10.1724044578935,12.6493787095247,10.0636896795513,14.4255821536455|short_description=p2@RASSF3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=283349 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14271 | |||
|TSSclassifier=S | |||
|UniProt=Q86WH2,Q496A9 | |||
|association_with_transcript=-57bp_to_ENST00000283172,ENST00000336061,ENST00000541539,ENST00000542104,NM_178169,NR_040718,uc001ssd.2,uc009zqn.2_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_2_at_RASSF3_5end | |||
|id=chr12:65004194..65004235,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.35e-38!140;CL:0000037!1.78e-34!172;CL:0000566!1.78e-34!172;CL:0002032!3.06e-34!165;CL:0000837!3.06e-34!165;CL:0002087!9.78e-34!119;CL:0000988!1.70e-33!182;CL:0002031!1.20e-30!124;CL:0000766!6.47e-21!76;CL:0000763!9.77e-19!112;CL:0000049!9.77e-19!112;CL:0000557!3.78e-18!71;CL:0002009!7.42e-18!65;CL:0002194!1.53e-17!63;CL:0000576!1.53e-17!63;CL:0000040!1.53e-17!63;CL:0000559!1.53e-17!63;CL:0002057!1.04e-16!42;CL:0000839!2.28e-15!70;CL:0000838!8.23e-15!52;CL:0000542!9.00e-15!53;CL:0000051!9.00e-15!53;CL:0000860!1.26e-14!45;CL:0000791!8.94e-09!18;CL:0000789!8.94e-09!18;CL:0002420!8.94e-09!18;CL:0002419!8.94e-09!18;CL:0000790!8.94e-09!18;CL:0000945!8.63e-08!24;CL:0000826!8.63e-08!24;CL:0000084!1.19e-07!25;CL:0000827!1.19e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.32e-14;33!CL:0002057;2.32e-14;33!CL:0000473;4.30e-14;39!CL:0000234;4.30e-14;39!CL:0000576;3.92e-11;48!CL:0002087;1.81e-10;104!CL:0000766;9.68e-10;69!CL:0000738;2.84e-09;136!CL:0000542;6.23e-09;53!CL:0000791;8.04e-09;18!CL:0000789;8.04e-09;18!CL:0002419;8.04e-09;18!CL:0000945;6.84e-08;24!CL:0000084;1.43e-07;25 | |||
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|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000178;6.89e-08;15!UBERON:0000179;6.89e-08;15!UBERON:0000463;6.89e-08;15 | |||
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| |||
|short_description=p2@RASSF3 | |||
}} |
Revision as of 23:55, 10 September 2013
Short description: | p2@RASSF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RASSF3_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -57bp_to_ENST00000283172, ENST00000336061, ENST00000541539, ENST00000542104, NM_178169, NR_040718, uc001ssd.2, uc009zqn.2_5end |
EntrezGene: | RASSF3 |
HGNC: | 14271 |
UniProt: | Q86WH2Q496A9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 9.36e-23 | 108 |
hematopoietic system | 7.23e-22 | 98 |
blood island | 7.23e-22 | 98 |
immune system | 1.50e-16 | 93 |
lateral plate mesoderm | 2.18e-14 | 203 |
bone marrow | 2.22e-14 | 76 |
bone element | 1.08e-12 | 82 |
skeletal element | 8.26e-09 | 90 |
blood | 5.43e-08 | 15 |
haemolymphatic fluid | 5.43e-08 | 15 |
organism substance | 5.43e-08 | 15 |
skeletal system | 2.44e-07 | 100 |
mesoderm | 3.11e-07 | 315 |
mesoderm-derived structure | 3.11e-07 | 315 |
presumptive mesoderm | 3.11e-07 | 315 |
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