FFCP PHASE1:Mm9::chr10:126516215..126516226,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=216439|HGNC=|MCL_coexpression_id=2|UniProt=Q3UHD9|association_with_transcript=252bp_to_ENSMUST00000039259,ENSMUST00000105254,NM_001033263,uc007hhx.1,uc007hhy.1_5end|description=CAGE_peak_6_at_Agap2_5end|id=chr10:126516215..126516226,+|ontology_enrichment_celltype=CL:0000117!2.82e-14!23;CL:0000337!2.82e-14!23;CL:0000540!1.26e-07!33;CL:0000047!1.26e-07!33;CL:0000031!1.26e-07!33;CL:0000404!1.26e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,8.55e-20,23;CL:0000337,8.55e-20,23;CL:0000540,1.16e-12,33;CL:0000047,1.16e-12,33;CL:0000031,1.16e-12,33;CL:0000404,1.16e-12,33;CL:0000393,3.75e-10,39;CL:0000211,3.75e-10,39;CL:0002319,7.08e-09,43;CL:0000221,1.35e-08,44;CL:0000133,1.35e-08,44;CL:0002612,2.60e-07,3;CL:0002613,4.26e-07,3;CL:0000120,9.66e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.72e-23!34;UBERON:0001049!4.91e-23!52;UBERON:0005068!4.91e-23!52;UBERON:0006241!4.91e-23!52;UBERON:0007135!4.91e-23!52;UBERON:0003056!8.48e-21!49;UBERON:0001017!2.12e-20!73;UBERON:0005743!2.12e-20!73;UBERON:0002346!2.14e-20!71;UBERON:0003075!2.14e-20!71;UBERON:0007284!2.14e-20!71;UBERON:0000955!6.64e-20!50;UBERON:0006238!6.64e-20!50;UBERON:0000033!2.32e-19!63;UBERON:0000073!2.40e-19!75;UBERON:0001016!2.40e-19!75;UBERON:0003080!4.14e-19!40;UBERON:0002791!4.53e-19!29;UBERON:0003528!4.53e-19!29;UBERON:0001893!4.53e-19!29;UBERON:0002616!5.38e-19!49;UBERON:0002780!2.22e-18!39;UBERON:0001890!2.22e-18!39;UBERON:0006240!2.22e-18!39;UBERON:0004121!1.98e-15!102;UBERON:0000924!1.98e-15!102;UBERON:0006601!1.98e-15!102;UBERON:0000956!9.12e-13!21;UBERON:0001869!9.12e-13!21;UBERON:0000203!9.12e-13!21;UBERON:0002021!5.29e-11!10;UBERON:0000411!5.29e-11!10;UBERON:0001950!5.29e-11!10;UBERON:0002619!2.09e-10!17;UBERON:0007811!2.14e-10!86;UBERON:0000153!6.94e-10!94;UBERON:0002420!1.31e-07!8;UBERON:0007245!1.31e-07!8;UBERON:0010009!1.31e-07!8;UBERON:0010011!1.31e-07!8;UBERON:0000454!1.31e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.64e-40,34;UBERON:0000073,6.02e-34,54;UBERON:0001017,6.52e-31,73;UBERON:0001049,9.21e-31,52;UBERON:0005068,9.21e-31,52;UBERON:0006241,9.21e-31,52;UBERON:0007135,9.21e-31,52;UBERON:0003528,1.19e-30,29;UBERON:0002791,1.19e-30,29;UBERON:0001893,1.19e-30,29;UBERON:0001016,7.05e-30,75;UBERON:0003080,1.01e-27,40;UBERON:0002780,3.20e-26,39;UBERON:0001890,3.20e-26,39;UBERON:0006240,3.20e-26,39;UBERON:0002346,1.84e-25,64;UBERON:0003075,1.84e-25,64;UBERON:0007284,1.84e-25,64;UBERON:0000955,4.84e-25,47;UBERON:0006238,4.84e-25,47;UBERON:0003056,2.02e-23,49;UBERON:0004121,2.11e-23,95;UBERON:0000924,2.11e-23,95;UBERON:0006601,2.11e-23,95;UBERON:0002021,2.34e-23,10;UBERON:0000411,2.34e-23,10;UBERON:0001950,2.34e-23,10;UBERON:0002616,2.59e-23,46;UBERON:0010371,1.97e-21,73;UBERON:0002619,3.47e-21,17;UBERON:0000956,1.95e-19,21;UBERON:0001869,1.95e-19,21;UBERON:0000203,1.95e-19,21;UBERON:0010314,1.60e-15,92;UBERON:0002420,1.82e-12,8;UBERON:0007245,1.82e-12,8;UBERON:0010009,1.82e-12,8;UBERON:0010011,1.82e-12,8;UBERON:0000454,1.82e-12,8;UBERON:0000369,3.32e-11,5;UBERON:0002435,3.32e-11,5;UBERON:0000204,3.32e-11,5;UBERON:0010082,3.32e-11,5;UBERON:0001948,4.26e-11,5;UBERON:0002315,4.26e-11,5;UBERON:0000025,3.17e-10,114;UBERON:0002240,3.50e-09,6;UBERON:0005174,3.50e-09,6;UBERON:0001137,3.50e-09,6;UBERON:0004111,4.17e-09,122;UBERON:0002257,2.60e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46625541438102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.03474691289397,3.1739458756322,3.80298842103708,0,0,0,0,0,0.299600110518405,0.384218305321555,0.311068836925433,0.945041568321835,0.420649922702764,7.14127461009509,5.07997644188711,1.10241719293459,0.766763768145891,0,0,3.95830748064082,2.15049146558741,4.48413378282659,5.39777097254217,4.16730696445408,1.95428099300967,0.56276261003168,1.98637722109853,7.36571463684169,10.3931326983345,4.10078780815661,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,0,0.628340120440365,0,0,0,0,1.9472783122627,28.3650373747548,4.64921102817598,17.0347833788431,13.0414883238469,5.61027720310812,10.3834408363365,0.407357455401265,0.248813941220186,0,0.210441855886474,0,0,0.180062129805349,0.452114453507145,0.272145996605311,0.2562274405697,0.655912071918102,1.29351685369508,0,0.189106080167819,0.351902248327898,0.219195732427575,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0.164167464079095,0.0810688095458557,0,0,0,16.6129059365661,2.57261530948211,0,0,0,0,0,0,0,0,0.474529061544512,0,0,0.198956472041151,0,0,0,0,0,0,1.1270773567308,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.468846746368813,0,0.252470927204373,0,0,0,0,0,0,0,0,0,19.2792789853084,0.283880170416537,1.06839362200353,0.162886959353576,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258717367565509,0,0.354680467284547,0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| ||
|EntrezGene=216439 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=Q3UHD9 | |||
|association_with_transcript=252bp_to_ENSMUST00000039259,ENSMUST00000105254,NM_001033263,uc007hhx.1,uc007hhy.1_5end | |||
|description=CAGE_peak_6_at_Agap2_5end | |||
|id=chr10:126516215..126516226,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.82e-14!23;CL:0000337!2.82e-14!23;CL:0000540!1.26e-07!33;CL:0000047!1.26e-07!33;CL:0000031!1.26e-07!33;CL:0000404!1.26e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.55e-20,23;CL:0000337,8.55e-20,23;CL:0000540,1.16e-12,33;CL:0000047,1.16e-12,33;CL:0000031,1.16e-12,33;CL:0000404,1.16e-12,33;CL:0000393,3.75e-10,39;CL:0000211,3.75e-10,39;CL:0002319,7.08e-09,43;CL:0000221,1.35e-08,44;CL:0000133,1.35e-08,44;CL:0002612,2.60e-07,3;CL:0002613,4.26e-07,3;CL:0000120,9.66e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.72e-23!34;UBERON:0001049!4.91e-23!52;UBERON:0005068!4.91e-23!52;UBERON:0006241!4.91e-23!52;UBERON:0007135!4.91e-23!52;UBERON:0003056!8.48e-21!49;UBERON:0001017!2.12e-20!73;UBERON:0005743!2.12e-20!73;UBERON:0002346!2.14e-20!71;UBERON:0003075!2.14e-20!71;UBERON:0007284!2.14e-20!71;UBERON:0000955!6.64e-20!50;UBERON:0006238!6.64e-20!50;UBERON:0000033!2.32e-19!63;UBERON:0000073!2.40e-19!75;UBERON:0001016!2.40e-19!75;UBERON:0003080!4.14e-19!40;UBERON:0002791!4.53e-19!29;UBERON:0003528!4.53e-19!29;UBERON:0001893!4.53e-19!29;UBERON:0002616!5.38e-19!49;UBERON:0002780!2.22e-18!39;UBERON:0001890!2.22e-18!39;UBERON:0006240!2.22e-18!39;UBERON:0004121!1.98e-15!102;UBERON:0000924!1.98e-15!102;UBERON:0006601!1.98e-15!102;UBERON:0000956!9.12e-13!21;UBERON:0001869!9.12e-13!21;UBERON:0000203!9.12e-13!21;UBERON:0002021!5.29e-11!10;UBERON:0000411!5.29e-11!10;UBERON:0001950!5.29e-11!10;UBERON:0002619!2.09e-10!17;UBERON:0007811!2.14e-10!86;UBERON:0000153!6.94e-10!94;UBERON:0002420!1.31e-07!8;UBERON:0007245!1.31e-07!8;UBERON:0010009!1.31e-07!8;UBERON:0010011!1.31e-07!8;UBERON:0000454!1.31e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.64e-40,34;UBERON:0000073,6.02e-34,54;UBERON:0001017,6.52e-31,73;UBERON:0001049,9.21e-31,52;UBERON:0005068,9.21e-31,52;UBERON:0006241,9.21e-31,52;UBERON:0007135,9.21e-31,52;UBERON:0003528,1.19e-30,29;UBERON:0002791,1.19e-30,29;UBERON:0001893,1.19e-30,29;UBERON:0001016,7.05e-30,75;UBERON:0003080,1.01e-27,40;UBERON:0002780,3.20e-26,39;UBERON:0001890,3.20e-26,39;UBERON:0006240,3.20e-26,39;UBERON:0002346,1.84e-25,64;UBERON:0003075,1.84e-25,64;UBERON:0007284,1.84e-25,64;UBERON:0000955,4.84e-25,47;UBERON:0006238,4.84e-25,47;UBERON:0003056,2.02e-23,49;UBERON:0004121,2.11e-23,95;UBERON:0000924,2.11e-23,95;UBERON:0006601,2.11e-23,95;UBERON:0002021,2.34e-23,10;UBERON:0000411,2.34e-23,10;UBERON:0001950,2.34e-23,10;UBERON:0002616,2.59e-23,46;UBERON:0010371,1.97e-21,73;UBERON:0002619,3.47e-21,17;UBERON:0000956,1.95e-19,21;UBERON:0001869,1.95e-19,21;UBERON:0000203,1.95e-19,21;UBERON:0010314,1.60e-15,92;UBERON:0002420,1.82e-12,8;UBERON:0007245,1.82e-12,8;UBERON:0010009,1.82e-12,8;UBERON:0010011,1.82e-12,8;UBERON:0000454,1.82e-12,8;UBERON:0000369,3.32e-11,5;UBERON:0002435,3.32e-11,5;UBERON:0000204,3.32e-11,5;UBERON:0010082,3.32e-11,5;UBERON:0001948,4.26e-11,5;UBERON:0002315,4.26e-11,5;UBERON:0000025,3.17e-10,114;UBERON:0002240,3.50e-09,6;UBERON:0005174,3.50e-09,6;UBERON:0001137,3.50e-09,6;UBERON:0004111,4.17e-09,122;UBERON:0002257,2.60e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46625541438102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.03474691289397,3.1739458756322,3.80298842103708,0,0,0,0,0,0.299600110518405,0.384218305321555,0.311068836925433,0.945041568321835,0.420649922702764,7.14127461009509,5.07997644188711,1.10241719293459,0.766763768145891,0,0,3.95830748064082,2.15049146558741,4.48413378282659,5.39777097254217,4.16730696445408,1.95428099300967,0.56276261003168,1.98637722109853,7.36571463684169,10.3931326983345,4.10078780815661,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,0,0.628340120440365,0,0,0,0,1.9472783122627,28.3650373747548,4.64921102817598,17.0347833788431,13.0414883238469,5.61027720310812,10.3834408363365,0.407357455401265,0.248813941220186,0,0.210441855886474,0,0,0.180062129805349,0.452114453507145,0.272145996605311,0.2562274405697,0.655912071918102,1.29351685369508,0,0.189106080167819,0.351902248327898,0.219195732427575,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0.164167464079095,0.0810688095458557,0,0,0,16.6129059365661,2.57261530948211,0,0,0,0,0,0,0,0,0.474529061544512,0,0,0.198956472041151,0,0,0,0,0,0,1.1270773567308,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.468846746368813,0,0.252470927204373,0,0,0,0,0,0,0,0,0,19.2792789853084,0.283880170416537,1.06839362200353,0.162886959353576,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258717367565509,0,0.354680467284547,0.178368817602071,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0.13020438484395,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,29.9318476587045,29.9211403729665,28.0718801585304,25.7779773515531,13.0165678756422,15.8632718451837,14.8504950050997,21.1650965515384,15.406841905463,12.4262474820437,0.103787347584177,0.399024873401031,0.170733605754134,0.486213434136588,0,0.183843508450014,0.222246727801615,0.412070114477788,0.320919209591815,0.505394423527595,0.25347929989024,0.377252682772152,0.842773567228942,0.704276676453562,0.402048282689293,0.952587382566147,0.347652977834566,0.578727661391115,0,0.441596760403192,0,0.887379030796687,0.238436189947321,0.145346416632329,0.470546902076653,0.592302255241736,0.548783918618318,0.526139422875686,0.543216455383447,1.68342681497322,0.711810108745045,1.28055827088233,0.409231043169689,0.309873682371932,0.192906610981141,0.999242311751784,0.701794825336225,0,0.57386499620653,0,0 | |||
|short_description=p6@Agap2 | |||
}} |
Revision as of 15:59, 12 September 2013
Short description: | p6@Agap2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Agap2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 252bp_to_ENSMUST00000039259, ENSMUST00000105254, NM_001033263, uc007hhx.1, uc007hhy.1_5end |
EntrezGene: | Agap2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.55e-20 | 23 |
neuroblast (sensu Vertebrata) | 8.55e-20 | 23 |
neuron | 1.16e-12 | 33 |
neuronal stem cell | 1.16e-12 | 33 |
neuroblast | 1.16e-12 | 33 |
electrically signaling cell | 1.16e-12 | 33 |
electrically responsive cell | 3.75e-10 | 39 |
electrically active cell | 3.75e-10 | 39 |
neural cell | 7.08e-09 | 43 |
ectodermal cell | 1.35e-08 | 44 |
neurectodermal cell | 1.35e-08 | 44 |
neuron of the ventral spinal cord | 2.60e-07 | 3 |
striatum neuron | 4.26e-07 | 3 |
granule cell | 9.66e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.