FFCP PHASE1:Hg19::chr5:14441081..14441113,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7204|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12303|TSSclassifier=W|UniProt=|association_with_transcript=153bp_to_ENST00000515710,uc003jfi.1_5end|coexpression_cluster_id=C38|description=CAGE_peak_8_at_TRIO_5end|id=chr5:14441081..14441113,+|ontology_enrichment_celltype=CL:0000055!8.10e-16!180;CL:0000183!1.67e-15!59;CL:0000680!9.03e-15!57;CL:0000056!9.03e-15!57;CL:0000355!9.03e-15!57;CL:0000187!3.30e-13!54;CL:0000393!2.45e-11!60;CL:0000211!2.45e-11!60;CL:0000057!6.02e-10!75;CL:0000192!2.83e-09!42;CL:0000514!2.83e-09!42;CL:0002539!1.12e-07!10;CL:0000188!2.15e-07!9|ontology_enrichment_celltype_v019=CL:0002539;8.32e-11;10!CL:0000188;3.54e-10;9!CL:0000680;1.03e-07;7!CL:0002570;2.82e-07;8!CL:0000359;5.02e-07;32!CL:0000187;6.92e-07;55|ontology_enrichment_celltype_v019_2=CL:0000680,1.60e-12,58;CL:0000056,1.60e-12,58;CL:0000355,1.60e-12,58;CL:0002539,7.49e-11,10;CL:0000187,2.24e-10,55;CL:0000188,3.48e-10,9;CL:0000393,1.41e-09,61;CL:0000211,1.41e-09,61;CL:0002570,2.24e-07,8;CL:0000359,4.36e-07,32|ontology_enrichment_development_v019=CL:0000355;1.95e-08;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!6.07e-22!365;UBERON:0004290!4.33e-18!70;UBERON:0000119!6.75e-18!312;UBERON:0003075!7.21e-18!86;UBERON:0007284!7.21e-18!86;UBERON:0001017!1.99e-17!82;UBERON:0005743!2.28e-17!86;UBERON:0002616!4.70e-17!59;UBERON:0000073!5.64e-17!94;UBERON:0001016!5.64e-17!94;UBERON:0000914!7.24e-17!83;UBERON:0002329!7.24e-17!83;UBERON:0003077!7.24e-17!83;UBERON:0003059!7.24e-17!83;UBERON:0007282!7.24e-17!83;UBERON:0009618!7.24e-17!83;UBERON:0007285!7.24e-17!83;UBERON:0002346!1.14e-16!90;UBERON:0000483!1.77e-16!309;UBERON:0002385!3.66e-16!63;UBERON:0001015!3.66e-16!63;UBERON:0000383!3.66e-16!63;UBERON:0000955!3.91e-16!69;UBERON:0006238!3.91e-16!69;UBERON:0001134!1.36e-15!61;UBERON:0002036!1.36e-15!61;UBERON:0003082!1.36e-15!61;UBERON:0001049!3.14e-15!57;UBERON:0005068!3.14e-15!57;UBERON:0006241!3.14e-15!57;UBERON:0007135!3.14e-15!57;UBERON:0000481!3.91e-15!347;UBERON:0000153!2.50e-14!129;UBERON:0007811!2.50e-14!129;UBERON:0000486!5.68e-14!82;UBERON:0000033!9.79e-14!123;UBERON:0003056!2.90e-13!61;UBERON:0007023!7.71e-13!115;UBERON:0002780!1.39e-12!41;UBERON:0001890!1.39e-12!41;UBERON:0006240!1.39e-12!41;UBERON:0003080!5.27e-12!42;UBERON:0001893!1.85e-11!34;UBERON:0002020!2.03e-11!34;UBERON:0003528!2.03e-11!34;UBERON:0001869!3.85e-11!32;UBERON:0002791!4.39e-11!33;UBERON:0005256!8.58e-11!143;UBERON:0004121!8.85e-11!169;UBERON:0000477!9.48e-11!286;UBERON:0000468!1.32e-10!659;UBERON:0002619!1.73e-10!22;UBERON:0000924!2.72e-10!173;UBERON:0006601!2.72e-10!173;UBERON:0001950!2.09e-09!20;UBERON:0001135!2.81e-09!15;UBERON:0000956!4.21e-09!25;UBERON:0000203!4.21e-09!25;UBERON:0000467!8.00e-09!625;UBERON:0000480!1.05e-08!626;UBERON:0000025!1.18e-08!194;UBERON:0004111!5.72e-08!241;UBERON:0000479!9.75e-08!787;UBERON:0002200!1.00e-07!11;UBERON:0006876!1.00e-07!11;UBERON:0000922!1.05e-07!612;UBERON:0004237!1.12e-07!10;UBERON:0004695!1.12e-07!10;UBERON:0002111!1.12e-07!10;UBERON:0004178!1.12e-07!10;UBERON:0002050!3.47e-07!605;UBERON:0005423!3.47e-07!605;UBERON:0000923!7.21e-07!604;UBERON:0005291!7.21e-07!604;UBERON:0006598!7.21e-07!604;UBERON:0002532!7.21e-07!604|ontology_enrichment_uberon_v019=UBERON:0002385;9.97e-20;31!UBERON:0001015;9.97e-20;31!UBERON:0000383;9.97e-20;31!UBERON:0001134;6.31e-14;16!UBERON:0002036;6.31e-14;16!UBERON:0004237;8.32e-11;10!UBERON:0004695;8.32e-11;10!UBERON:0002111;8.32e-11;10!UBERON:0004178;8.32e-11;10!UBERON:0005284;2.54e-08;5!UBERON:0001135;4.39e-08;15!UBERON:0002619;6.28e-08;22!UBERON:0006876;7.41e-08;11!UBERON:0001950;1.93e-07;20|ontology_enrichment_uberon_v019_2=UBERON:0002329,3.79e-15,71;UBERON:0003059,3.79e-15,71;UBERON:0007282,3.79e-15,71;UBERON:0004290,3.79e-15,71;UBERON:0009618,3.79e-15,71;UBERON:0003077,8.39e-15,72;UBERON:0007285,8.39e-15,72;UBERON:0007524,1.82e-14,73;UBERON:0001134,1.37e-13,62;UBERON:0002036,1.37e-13,62;UBERON:0003082,1.37e-13,62;UBERON:0007503,6.30e-13,78;UBERON:0002385,6.68e-13,64;UBERON:0001015,6.68e-13,64;UBERON:0000383,6.68e-13,64;UBERON:0000486,1.38e-11,83;UBERON:0004237,7.49e-11,10;UBERON:0004695,7.49e-11,10;UBERON:0002111,7.49e-11,10;UBERON:0004178,7.49e-11,10;UBERON:0005256,2.25e-09,122;UBERON:0005284,2.12e-08,5;UBERON:0006876,3.70e-08,11;UBERON:0001135,5.39e-08,15;UBERON:0002619,1.30e-07,22;UBERON:0000119,1.92e-07,309;UBERON:0001950,3.91e-07,20;UBERON:0000479,9.61e-07,773|phase1_expression=0.54503513781167,1.2846031433459,0.563817616383885,0,0,0,0,3.79031924056099,0.522371256399677,0.737201809504527,0,0,0,0,0.331397375727916,1.34465029290355,1.80808358407193,1.46062018077475,1.46379839637152,1.47745269692145,1.83600622119828,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7204 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12303 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=153bp_to_ENST00000515710,uc003jfi.1_5end | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_8_at_TRIO_5end | |||
|id=chr5:14441081..14441113,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.10e-16!180;CL:0000183!1.67e-15!59;CL:0000680!9.03e-15!57;CL:0000056!9.03e-15!57;CL:0000355!9.03e-15!57;CL:0000187!3.30e-13!54;CL:0000393!2.45e-11!60;CL:0000211!2.45e-11!60;CL:0000057!6.02e-10!75;CL:0000192!2.83e-09!42;CL:0000514!2.83e-09!42;CL:0002539!1.12e-07!10;CL:0000188!2.15e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002539;8.32e-11;10!CL:0000188;3.54e-10;9!CL:0000680;1.03e-07;7!CL:0002570;2.82e-07;8!CL:0000359;5.02e-07;32!CL:0000187;6.92e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.60e-12,58;CL:0000056,1.60e-12,58;CL:0000355,1.60e-12,58;CL:0002539,7.49e-11,10;CL:0000187,2.24e-10,55;CL:0000188,3.48e-10,9;CL:0000393,1.41e-09,61;CL:0000211,1.41e-09,61;CL:0002570,2.24e-07,8;CL:0000359,4.36e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000355;1.95e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002385;9.97e-20;31!UBERON:0001015;9.97e-20;31!UBERON:0000383;9.97e-20;31!UBERON:0001134;6.31e-14;16!UBERON:0002036;6.31e-14;16!UBERON:0004237;8.32e-11;10!UBERON:0004695;8.32e-11;10!UBERON:0002111;8.32e-11;10!UBERON:0004178;8.32e-11;10!UBERON:0005284;2.54e-08;5!UBERON:0001135;4.39e-08;15!UBERON:0002619;6.28e-08;22!UBERON:0006876;7.41e-08;11!UBERON:0001950;1.93e-07;20 | |||
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| |||
|short_description=p8@TRIO | |||
}} |
Revision as of 13:47, 13 September 2013
Short description: | p8@TRIO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_TRIO_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 153bp_to_ENST00000515710, uc003jfi.1_5end |
EntrezGene: | TRIO |
HGNC: | 12303 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.60e-12 | 58 |
myoblast | 1.60e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.60e-12 | 58 |
aortic smooth muscle cell | 7.49e-11 | 10 |
muscle cell | 2.24e-10 | 55 |
cell of skeletal muscle | 3.48e-10 | 9 |
electrically responsive cell | 1.41e-09 | 61 |
electrically active cell | 1.41e-09 | 61 |
mesenchymal stem cell of adipose | 2.24e-07 | 8 |
vascular associated smooth muscle cell | 4.36e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
somite | 3.79e-15 | 71 |
presomitic mesoderm | 3.79e-15 | 71 |
presumptive segmental plate | 3.79e-15 | 71 |
dermomyotome | 3.79e-15 | 71 |
trunk paraxial mesoderm | 3.79e-15 | 71 |
paraxial mesoderm | 8.39e-15 | 72 |
presumptive paraxial mesoderm | 8.39e-15 | 72 |
dense mesenchyme tissue | 1.82e-14 | 73 |
skeletal muscle tissue | 1.37e-13 | 62 |
striated muscle tissue | 1.37e-13 | 62 |
myotome | 1.37e-13 | 62 |
epithelial vesicle | 6.30e-13 | 78 |
muscle tissue | 6.68e-13 | 64 |
musculature | 6.68e-13 | 64 |
musculature of body | 6.68e-13 | 64 |
multilaminar epithelium | 1.38e-11 | 83 |
blood vessel smooth muscle | 7.49e-11 | 10 |
arterial system smooth muscle | 7.49e-11 | 10 |
artery smooth muscle tissue | 7.49e-11 | 10 |
aorta smooth muscle tissue | 7.49e-11 | 10 |
trunk mesenchyme | 2.25e-09 | 122 |
brain vasculature | 2.12e-08 | 5 |
vasculature of organ | 3.70e-08 | 11 |
smooth muscle tissue | 5.39e-08 | 15 |
regional part of cerebral cortex | 1.30e-07 | 22 |
cell layer | 1.92e-07 | 309 |
neocortex | 3.91e-07 | 20 |
tissue | 9.61e-07 | 773 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.