FFCP PHASE1:Mm9::chr17:56279737..56279750,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20359|HGNC=|MCL_coexpression_id=1|UniProt=O54951,Q3UTK5|association_with_transcript=15bp_to_ENSMUST00000001256,NM_001130456,uc008dbe.1_5end|description=CAGE_peak_5_at_Sema6b_5end|id=chr17:56279737..56279750,-|ontology_enrichment_celltype=CL:0000117!1.10e-14!23;CL:0000337!1.10e-14!23;CL:0000221!1.00e-10!44;CL:0000133!1.00e-10!44;CL:0002319!2.80e-10!43;CL:0000540!3.65e-10!33;CL:0000047!3.65e-10!33;CL:0000031!3.65e-10!33;CL:0000404!3.65e-10!33;CL:0000055!8.28e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.25e-24,23;CL:0000337,1.25e-24,23;CL:0000540,1.27e-16,33;CL:0000047,1.27e-16,33;CL:0000031,1.27e-16,33;CL:0000404,1.27e-16,33;CL:0000221,1.21e-15,44;CL:0000133,1.21e-15,44;CL:0002319,7.51e-15,43;CL:0000393,5.45e-13,39;CL:0000211,5.45e-13,39;CL:0002321,8.41e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.64e-27!73;UBERON:0005743!1.64e-27!73;UBERON:0000073!3.04e-27!75;UBERON:0001016!3.04e-27!75;UBERON:0001049!1.75e-26!52;UBERON:0005068!1.75e-26!52;UBERON:0006241!1.75e-26!52;UBERON:0007135!1.75e-26!52;UBERON:0000033!2.80e-26!63;UBERON:0002346!3.66e-26!71;UBERON:0003075!3.66e-26!71;UBERON:0007284!3.66e-26!71;UBERON:0000955!8.09e-26!50;UBERON:0006238!8.09e-26!50;UBERON:0002616!5.71e-25!49;UBERON:0004121!7.69e-25!102;UBERON:0000924!7.69e-25!102;UBERON:0006601!7.69e-25!102;UBERON:0003056!8.21e-22!49;UBERON:0003080!9.06e-21!40;UBERON:0002020!2.06e-20!34;UBERON:0002780!4.88e-20!39;UBERON:0001890!4.88e-20!39;UBERON:0006240!4.88e-20!39;UBERON:0002791!4.06e-17!29;UBERON:0003528!4.06e-17!29;UBERON:0001893!4.06e-17!29;UBERON:0000153!2.59e-16!94;UBERON:0007811!7.22e-15!86;UBERON:0000956!6.50e-12!21;UBERON:0001869!6.50e-12!21;UBERON:0000203!6.50e-12!21;UBERON:0002619!7.10e-10!17;UBERON:0002021!1.79e-07!10;UBERON:0000411!1.79e-07!10;UBERON:0001950!1.79e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.28e-40,54;UBERON:0001017,2.08e-39,73;UBERON:0001016,5.92e-38,75;UBERON:0001049,2.49e-36,52;UBERON:0005068,2.49e-36,52;UBERON:0006241,2.49e-36,52;UBERON:0007135,2.49e-36,52;UBERON:0004121,2.79e-33,95;UBERON:0000924,2.79e-33,95;UBERON:0006601,2.79e-33,95;UBERON:0002346,5.12e-33,64;UBERON:0003075,5.12e-33,64;UBERON:0007284,5.12e-33,64;UBERON:0002020,2.31e-31,34;UBERON:0000955,1.02e-30,47;UBERON:0006238,1.02e-30,47;UBERON:0010371,2.53e-30,73;UBERON:0002616,2.74e-29,46;UBERON:0003528,2.94e-25,29;UBERON:0002791,2.94e-25,29;UBERON:0001893,2.94e-25,29;UBERON:0003080,3.15e-25,40;UBERON:0003056,2.40e-24,49;UBERON:0002780,5.60e-24,39;UBERON:0001890,5.60e-24,39;UBERON:0006240,5.60e-24,39;UBERON:0010314,3.33e-21,92;UBERON:0000956,9.17e-16,21;UBERON:0001869,9.17e-16,21;UBERON:0000203,9.17e-16,21;UBERON:0002619,4.92e-12,17;UBERON:0003076,2.86e-11,12;UBERON:0003057,2.86e-11,12;UBERON:0002021,3.38e-11,10;UBERON:0000411,3.38e-11,10;UBERON:0001950,3.38e-11,10;UBERON:0002420,6.37e-11,8;UBERON:0007245,6.37e-11,8;UBERON:0010009,6.37e-11,8;UBERON:0010011,6.37e-11,8;UBERON:0000454,6.37e-11,8;UBERON:0000025,9.82e-11,114;UBERON:0004111,1.03e-10,122;UBERON:0002240,5.01e-08,6;UBERON:0005174,5.01e-08,6;UBERON:0001137,5.01e-08,6;UBERON:0001948,2.89e-07,5;UBERON:0002315,2.89e-07,5;UBERON:0000369,5.28e-07,5;UBERON:0002435,5.28e-07,5;UBERON:0000204,5.28e-07,5;UBERON:0010082,5.28e-07,5;UBERON:0011216,5.55e-07,194;UBERON:0002950,9.02e-07,4;UBERON:0001891,9.02e-07,4;UBERON:0009616,9.02e-07,4;UBERON:0010286,9.02e-07,4|phase1_expression=2.08193501236232,0,0,0,0,0,0,0,0,0,0,0,0,0,0.666219523631325,0,0,0.157731082679119,0,0,1.02051948181284,0.595745707205312,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0,0.439372365468944,0.388859798148567,0.279972843250725,0,0,0,0,0,0,0,2.22548106945558,2.64495489636016,1.26766280701236,0,0,0,0,0,1.79760066311043,3.07374644257244,2.28117147078651,1.35005938331691,1.68259969081106,3.99911378165325,3.53389665522582,3.55223317723367,1.82106394934649,0.919218786610021,9.91042928994498,8.93811366596314,5.9906547969935,3.82470234417562,3.11057988248193,2.08365348222704,5.30447698102624,6.19038871034848,3.97275444219706,5.89257170947335,2.98980529678116,2.23679334990361,0.151452386666368,0.226714680320357,2.6087803983151,0,0,0,0,0,0.561777680527007,0,0,0,1.97180787687353,0,0,0,0,0,0,0.34255163915718,0.517875767294343,0.29688427812965,0.346970653532272,0.304465478312141,0.461230994512117,0.301445281105245,0.117588707135705,0.251333182659351,0,0.289198713839823,0,0.647067399789637,0,0,0,1.17112318804619,2.51336048176146,0,0,0,0,4.49371918214468,3.20250421973039,3.76963056338593,4.17178368461463,3.3243009452943,5.61027720310812,6.16516799657479,0,0.497627882440372,0,0,0.130120442962704,0.689706313300419,1.26043490863744,1.65775299619287,1.15662048557257,0.768682321709099,0.937017245597288,1.03481348295606,0.215567992932842,0.945530400839096,0.175951124163949,1.09597866213787,0.556094498451196,0.696504333044333,0.205782136407943,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0.350296027101508,0,0.164167464079095,0.4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| ||
|EntrezGene=20359 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=O54951,Q3UTK5 | |||
|association_with_transcript=15bp_to_ENSMUST00000001256,NM_001130456,uc008dbe.1_5end | |||
|description=CAGE_peak_5_at_Sema6b_5end | |||
|id=chr17:56279737..56279750,- | |||
|ontology_enrichment_celltype=CL:0000117!1.10e-14!23;CL:0000337!1.10e-14!23;CL:0000221!1.00e-10!44;CL:0000133!1.00e-10!44;CL:0002319!2.80e-10!43;CL:0000540!3.65e-10!33;CL:0000047!3.65e-10!33;CL:0000031!3.65e-10!33;CL:0000404!3.65e-10!33;CL:0000055!8.28e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.25e-24,23;CL:0000337,1.25e-24,23;CL:0000540,1.27e-16,33;CL:0000047,1.27e-16,33;CL:0000031,1.27e-16,33;CL:0000404,1.27e-16,33;CL:0000221,1.21e-15,44;CL:0000133,1.21e-15,44;CL:0002319,7.51e-15,43;CL:0000393,5.45e-13,39;CL:0000211,5.45e-13,39;CL:0002321,8.41e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.64e-27!73;UBERON:0005743!1.64e-27!73;UBERON:0000073!3.04e-27!75;UBERON:0001016!3.04e-27!75;UBERON:0001049!1.75e-26!52;UBERON:0005068!1.75e-26!52;UBERON:0006241!1.75e-26!52;UBERON:0007135!1.75e-26!52;UBERON:0000033!2.80e-26!63;UBERON:0002346!3.66e-26!71;UBERON:0003075!3.66e-26!71;UBERON:0007284!3.66e-26!71;UBERON:0000955!8.09e-26!50;UBERON:0006238!8.09e-26!50;UBERON:0002616!5.71e-25!49;UBERON:0004121!7.69e-25!102;UBERON:0000924!7.69e-25!102;UBERON:0006601!7.69e-25!102;UBERON:0003056!8.21e-22!49;UBERON:0003080!9.06e-21!40;UBERON:0002020!2.06e-20!34;UBERON:0002780!4.88e-20!39;UBERON:0001890!4.88e-20!39;UBERON:0006240!4.88e-20!39;UBERON:0002791!4.06e-17!29;UBERON:0003528!4.06e-17!29;UBERON:0001893!4.06e-17!29;UBERON:0000153!2.59e-16!94;UBERON:0007811!7.22e-15!86;UBERON:0000956!6.50e-12!21;UBERON:0001869!6.50e-12!21;UBERON:0000203!6.50e-12!21;UBERON:0002619!7.10e-10!17;UBERON:0002021!1.79e-07!10;UBERON:0000411!1.79e-07!10;UBERON:0001950!1.79e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.28e-40,54;UBERON:0001017,2.08e-39,73;UBERON:0001016,5.92e-38,75;UBERON:0001049,2.49e-36,52;UBERON:0005068,2.49e-36,52;UBERON:0006241,2.49e-36,52;UBERON:0007135,2.49e-36,52;UBERON:0004121,2.79e-33,95;UBERON:0000924,2.79e-33,95;UBERON:0006601,2.79e-33,95;UBERON:0002346,5.12e-33,64;UBERON:0003075,5.12e-33,64;UBERON:0007284,5.12e-33,64;UBERON:0002020,2.31e-31,34;UBERON:0000955,1.02e-30,47;UBERON:0006238,1.02e-30,47;UBERON:0010371,2.53e-30,73;UBERON:0002616,2.74e-29,46;UBERON:0003528,2.94e-25,29;UBERON:0002791,2.94e-25,29;UBERON:0001893,2.94e-25,29;UBERON:0003080,3.15e-25,40;UBERON:0003056,2.40e-24,49;UBERON:0002780,5.60e-24,39;UBERON:0001890,5.60e-24,39;UBERON:0006240,5.60e-24,39;UBERON:0010314,3.33e-21,92;UBERON:0000956,9.17e-16,21;UBERON:0001869,9.17e-16,21;UBERON:0000203,9.17e-16,21;UBERON:0002619,4.92e-12,17;UBERON:0003076,2.86e-11,12;UBERON:0003057,2.86e-11,12;UBERON:0002021,3.38e-11,10;UBERON:0000411,3.38e-11,10;UBERON:0001950,3.38e-11,10;UBERON:0002420,6.37e-11,8;UBERON:0007245,6.37e-11,8;UBERON:0010009,6.37e-11,8;UBERON:0010011,6.37e-11,8;UBERON:0000454,6.37e-11,8;UBERON:0000025,9.82e-11,114;UBERON:0004111,1.03e-10,122;UBERON:0002240,5.01e-08,6;UBERON:0005174,5.01e-08,6;UBERON:0001137,5.01e-08,6;UBERON:0001948,2.89e-07,5;UBERON:0002315,2.89e-07,5;UBERON:0000369,5.28e-07,5;UBERON:0002435,5.28e-07,5;UBERON:0000204,5.28e-07,5;UBERON:0010082,5.28e-07,5;UBERON:0011216,5.55e-07,194;UBERON:0002950,9.02e-07,4;UBERON:0001891,9.02e-07,4;UBERON:0009616,9.02e-07,4;UBERON:0010286,9.02e-07,4 | |||
|phase1_expression=2.08193501236232,0,0,0,0,0,0,0,0,0,0,0,0,0,0.666219523631325,0,0,0.157731082679119,0,0,1.02051948181284,0.595745707205312,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0,0.439372365468944,0.388859798148567,0.279972843250725,0,0,0,0,0,0,0,2.22548106945558,2.64495489636016,1.26766280701236,0,0,0,0,0,1.79760066311043,3.07374644257244,2.28117147078651,1.35005938331691,1.68259969081106,3.99911378165325,3.53389665522582,3.55223317723367,1.82106394934649,0.919218786610021,9.91042928994498,8.93811366596314,5.9906547969935,3.82470234417562,3.11057988248193,2.08365348222704,5.30447698102624,6.19038871034848,3.97275444219706,5.89257170947335,2.98980529678116,2.23679334990361,0.151452386666368,0.226714680320357,2.6087803983151,0,0,0,0,0,0.561777680527007,0,0,0,1.97180787687353,0,0,0,0,0,0,0.34255163915718,0.517875767294343,0.29688427812965,0.346970653532272,0.304465478312141,0.461230994512117,0.301445281105245,0.117588707135705,0.251333182659351,0,0.289198713839823,0,0.647067399789637,0,0,0,1.17112318804619,2.51336048176146,0,0,0,0,4.49371918214468,3.20250421973039,3.76963056338593,4.17178368461463,3.3243009452943,5.61027720310812,6.16516799657479,0,0.497627882440372,0,0,0.130120442962704,0.689706313300419,1.26043490863744,1.65775299619287,1.15662048557257,0.768682321709099,0.937017245597288,1.03481348295606,0.215567992932842,0.945530400839096,0.175951124163949,1.09597866213787,0.556094498451196,0.696504333044333,0.205782136407943,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0.350296027101508,0,0.164167464079095,0.405344047729279,0.146199987425332,0,0,4.20579897128254,2.46971069710283,0,0,0.426576501070468,0,0,0,0,0.190225626112559,0,0,0,0.198956472041151,0.19496408711912,0,0,0,0.189667900953082,0.228497025219458,0,0.203651327845314,0.193952487167626,0.210407459670956,0.0632365371242573,0,0.156998727841375,0,0,0.333690211432188,0,0,0.405720242777006,0.241177159752417,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0.37898282354097,0.162964976442026,0,0.234690248288502,0,0.476087281772027,0.195133647857799,0,0.221464689648775,0,0,0.172684981865896,0.289298117163023,0,0,0,0.275936746304732,2.88991061978026,3.28192722458169,0,1.26235463602186,0,0,0.861693590931196,0,0.445597348164788,0,0,0,0.790575555893047,9.63963949265421,0.283880170416537,0.178065603667255,0.162886959353576,0.164970122972535,0,0.728341908464944,0,0,0,0,0,0,0,0,0,0,2.04263763452273,0.18006109403131,0.388076051348264,0.214337035031592,0.886701168211368,0.891844088010353,0.987294123612726,2.13125464380219,0.469343416127421,0.21183207086382,0,0,0.161464426695906,0.0603129249281559,0,0,0,1.66882771809459,0.170870880797853,0.206386867963223,0.185194527369712,0,0.136694227721025,0,0,0,0,0,0,0.406638934253697,0,0,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0.104859344425711,0,0.288030006257865,0,0.405450430580328,0,0,0.358053391334963,0.198681354781265,0.120195449519969,0.147689527174577,0.201932899896295,0.0762068066549998,0,0,0,0,0,0.221985953374065,0.179427713218951,0.335769232728157,0,0.187682475451182,0,0,0,4.51801474093653,4.14292712856459,6.30185064783336,6.01486138202907,0.685082519770642,3.7769694869485,4.72515750162264,2.70192721934532,5.43770890781046,2.5888015587591,0.103787347584177,0.399024873401031,0.853668028770671,1.21553358534147,0.628839487883947,0.367687016900028,1.77797382241292,1.23621034343337,0.320919209591815,2.02157769411038,0.50695859978048,0.565879024158229,0.561849044819294,0.89635213366817,0.976402972245426,0.952587382566147,0.927074607558844,0.77163688185482,2.06042950401653,0.883193520806384,0.342869252385415,0.532427418478012,0.953744759789284,1.16277133305863,1.03520318456864,0.846146078916765,1.82927972872773,0.789209134313529,0.814824683075171,0,1.30498519936592,0.886540341380071,1.22769312950907,0.929621047115796,0.771626443924566,1.49886346762768,0.701794825336225,0.859484216193193,0.956441660344217,1.54413993383661,0.695603506861264 | |||
|short_description=p5@Sema6b | |||
}} |
Revision as of 14:58, 13 September 2013
Short description: | p5@Sema6b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Sema6b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 15bp_to_ENSMUST00000001256, NM_001130456, uc008dbe.1_5end |
EntrezGene: | Sema6b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.25e-24 | 23 |
neuroblast (sensu Vertebrata) | 1.25e-24 | 23 |
neuron | 1.27e-16 | 33 |
neuronal stem cell | 1.27e-16 | 33 |
neuroblast | 1.27e-16 | 33 |
electrically signaling cell | 1.27e-16 | 33 |
ectodermal cell | 1.21e-15 | 44 |
neurectodermal cell | 1.21e-15 | 44 |
neural cell | 7.51e-15 | 43 |
electrically responsive cell | 5.45e-13 | 39 |
electrically active cell | 5.45e-13 | 39 |
embryonic cell | 8.41e-08 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.