FFCP PHASE1:Mm9::chr1:6477388..6477419,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=240690|HGNC=|MCL_coexpression_id=20|UniProt=Q80TY4|association_with_transcript=0bp_to_ENSMUST00000131494_5end|description=CAGE_peak_3_at_St18_5end|id=chr1:6477388..6477419,+|ontology_enrichment_celltype=CL:0002610!7.44e-08!3;CL:0000117!1.56e-07!23;CL:0000337!1.56e-07!23;CL:0002614!1.66e-07!3|ontology_enrichment_celltype_v019_2=CL:0002610,1.12e-09,3;CL:0002614,3.16e-09,3;CL:0000117,3.22e-08,23;CL:0000337,3.22e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.54e-34!63;UBERON:0002346!4.30e-31!71;UBERON:0003075!4.30e-31!71;UBERON:0007284!4.30e-31!71;UBERON:0001049!9.00e-27!52;UBERON:0005068!9.00e-27!52;UBERON:0006241!9.00e-27!52;UBERON:0007135!9.00e-27!52;UBERON:0000955!1.24e-26!50;UBERON:0006238!1.24e-26!50;UBERON:0004121!1.21e-25!102;UBERON:0000924!1.21e-25!102;UBERON:0006601!1.21e-25!102;UBERON:0002616!4.83e-25!49;UBERON:0003056!8.47e-25!49;UBERON:0001017!4.77e-24!73;UBERON:0005743!4.77e-24!73;UBERON:0000073!3.37e-23!75;UBERON:0001016!3.37e-23!75;UBERON:0007811!4.11e-23!86;UBERON:0000153!1.90e-20!94;UBERON:0002020!3.92e-20!34;UBERON:0002021!7.81e-19!10;UBERON:0000411!7.81e-19!10;UBERON:0001950!7.81e-19!10;UBERON:0002791!2.36e-15!29;UBERON:0003528!2.36e-15!29;UBERON:0001893!2.36e-15!29;UBERON:0003080!2.59e-15!40;UBERON:0002298!4.69e-14!6;UBERON:0002780!7.22e-14!39;UBERON:0001890!7.22e-14!39;UBERON:0006240!7.22e-14!39;UBERON:0003076!2.78e-13!12;UBERON:0003057!2.78e-13!12;UBERON:0002619!1.20e-12!17;UBERON:0000956!6.81e-12!21;UBERON:0001869!6.81e-12!21;UBERON:0000203!6.81e-12!21;UBERON:0000970!7.97e-12!9;UBERON:0000019!7.97e-12!9;UBERON:0000047!7.97e-12!9;UBERON:0004088!7.97e-12!9;UBERON:0002104!7.97e-12!9;UBERON:0001456!7.97e-12!9;UBERON:0003072!7.97e-12!9;UBERON:0003071!7.97e-12!9;UBERON:0004128!7.97e-12!9;UBERON:0002950!1.18e-09!4;UBERON:0001891!1.18e-09!4;UBERON:0009616!1.18e-09!4;UBERON:0001444!1.88e-09!11;UBERON:0000475!9.72e-09!200;UBERON:0000020!1.46e-08!12;UBERON:0001032!1.46e-08!12;UBERON:0004456!1.46e-08!12;UBERON:0000025!1.87e-08!114;UBERON:0002240!2.13e-08!6;UBERON:0005174!2.13e-08!6;UBERON:0001137!2.13e-08!6;UBERON:0004684!7.44e-08!3;UBERON:0002275!7.44e-08!3;UBERON:0005085!8.23e-08!13;UBERON:0002038!1.66e-07!3;UBERON:0002308!1.66e-07!3;UBERON:0009663!1.66e-07!3;UBERON:0009661!1.66e-07!3;UBERON:0006331!1.66e-07!3;UBERON:0000125!1.66e-07!3;UBERON:0004111!1.81e-07!122;UBERON:0000483!3.60e-07!181;UBERON:0000119!5.30e-07!183|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.35e-35,54;UBERON:0001049,5.52e-31,52;UBERON:0005068,5.52e-31,52;UBERON:0006241,5.52e-31,52;UBERON:0007135,5.52e-31,52;UBERON:0001017,4.36e-29,73;UBERON:0001016,3.72e-28,75;UBERON:0000955,7.54e-27,47;UBERON:0006238,7.54e-27,47;UBERON:0002346,3.20e-26,64;UBERON:0003075,3.20e-26,64;UBERON:0007284,3.20e-26,64;UBERON:0002616,6.00e-25,46;UBERON:0004121,1.20e-22,95;UBERON:0000924,1.20e-22,95;UBERON:0006601,1.20e-22,95;UBERON:0010371,2.65e-22,73;UBERON:0002020,1.43e-21,34;UBERON:0002021,1.51e-19,10;UBERON:0000411,1.51e-19,10;UBERON:0001950,1.51e-19,10;UBERON:0003080,1.38e-18,40;UBERON:0003528,6.19e-18,29;UBERON:0002791,6.19e-18,29;UBERON:0001893,6.19e-18,29;UBERON:0002780,9.47e-17,39;UBERON:0001890,9.47e-17,39;UBERON:0006240,9.47e-17,39;UBERON:0010314,1.53e-16,92;UBERON:0003056,3.36e-16,49;UBERON:0003076,1.05e-13,12;UBERON:0003057,1.05e-13,12;UBERON:0002619,1.14e-13,17;UBERON:0000956,3.52e-13,21;UBERON:0001869,3.52e-13,21;UBERON:0000203,3.52e-13,21;UBERON:0002950,5.45e-12,4;UBERON:0001891,5.45e-12,4;UBERON:0009616,5.45e-12,4;UBERON:0010286,5.45e-12,4;UBERON:0000025,3.70e-11,114;UBERON:0004111,4.59e-10,122;UBERON:0004684,1.12e-09,3;UBERON:0002275,1.12e-09,3;UBERON:0002038,3.16e-09,3;UBERON:0009663,3.16e-09,3;UBERON:0009661,3.16e-09,3;UBERON:0000125,3.16e-09,3;UBERON:0002308,3.16e-09,3;UBERON:0004733,4.22e-08,6;UBERON:0004732,4.22e-08,6;UBERON:0002028,4.22e-08,6;UBERON:0007277,4.22e-08,6;UBERON:0001896,2.63e-07,2;UBERON:0002298,2.63e-07,2;UBERON:0005290,2.63e-07,2;UBERON:0010096,2.63e-07,2;UBERON:0011216,3.40e-07,194;UBERON:0002240,3.89e-07,6;UBERON:0005174,3.89e-07,6;UBERON:0001137,3.89e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38121212422995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42825492201902,1.76694832761291,0,0,0,15.4162233399144,9.19348834213351,13.2101618600369,0,0,0,5.862842979029,6.75315132038016,10.3902808488231,1.17851434189467,0.711858403995515,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.44117753425404,4.60782754989601,0,0,0,0,15.2786452192919,14.1825186873774,0,6.95297280769106,3.58001640262463,14.1295870300501,12.6548185192851,0,0,0,0.841767423545896,0.130120442962704,0.229902104433473,0.540186389416048,0,0.612328492361951,0.12811372028485,0.281105173679186,1.55222022443409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.46304768538573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|EntrezGene=240690 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|UniProt=Q80TY4 | |||
|association_with_transcript=0bp_to_ENSMUST00000131494_5end | |||
|description=CAGE_peak_3_at_St18_5end | |||
|id=chr1:6477388..6477419,+ | |||
|ontology_enrichment_celltype=CL:0002610!7.44e-08!3;CL:0000117!1.56e-07!23;CL:0000337!1.56e-07!23;CL:0002614!1.66e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,1.12e-09,3;CL:0002614,3.16e-09,3;CL:0000117,3.22e-08,23;CL:0000337,3.22e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.54e-34!63;UBERON:0002346!4.30e-31!71;UBERON:0003075!4.30e-31!71;UBERON:0007284!4.30e-31!71;UBERON:0001049!9.00e-27!52;UBERON:0005068!9.00e-27!52;UBERON:0006241!9.00e-27!52;UBERON:0007135!9.00e-27!52;UBERON:0000955!1.24e-26!50;UBERON:0006238!1.24e-26!50;UBERON:0004121!1.21e-25!102;UBERON:0000924!1.21e-25!102;UBERON:0006601!1.21e-25!102;UBERON:0002616!4.83e-25!49;UBERON:0003056!8.47e-25!49;UBERON:0001017!4.77e-24!73;UBERON:0005743!4.77e-24!73;UBERON:0000073!3.37e-23!75;UBERON:0001016!3.37e-23!75;UBERON:0007811!4.11e-23!86;UBERON:0000153!1.90e-20!94;UBERON:0002020!3.92e-20!34;UBERON:0002021!7.81e-19!10;UBERON:0000411!7.81e-19!10;UBERON:0001950!7.81e-19!10;UBERON:0002791!2.36e-15!29;UBERON:0003528!2.36e-15!29;UBERON:0001893!2.36e-15!29;UBERON:0003080!2.59e-15!40;UBERON:0002298!4.69e-14!6;UBERON:0002780!7.22e-14!39;UBERON:0001890!7.22e-14!39;UBERON:0006240!7.22e-14!39;UBERON:0003076!2.78e-13!12;UBERON:0003057!2.78e-13!12;UBERON:0002619!1.20e-12!17;UBERON:0000956!6.81e-12!21;UBERON:0001869!6.81e-12!21;UBERON:0000203!6.81e-12!21;UBERON:0000970!7.97e-12!9;UBERON:0000019!7.97e-12!9;UBERON:0000047!7.97e-12!9;UBERON:0004088!7.97e-12!9;UBERON:0002104!7.97e-12!9;UBERON:0001456!7.97e-12!9;UBERON:0003072!7.97e-12!9;UBERON:0003071!7.97e-12!9;UBERON:0004128!7.97e-12!9;UBERON:0002950!1.18e-09!4;UBERON:0001891!1.18e-09!4;UBERON:0009616!1.18e-09!4;UBERON:0001444!1.88e-09!11;UBERON:0000475!9.72e-09!200;UBERON:0000020!1.46e-08!12;UBERON:0001032!1.46e-08!12;UBERON:0004456!1.46e-08!12;UBERON:0000025!1.87e-08!114;UBERON:0002240!2.13e-08!6;UBERON:0005174!2.13e-08!6;UBERON:0001137!2.13e-08!6;UBERON:0004684!7.44e-08!3;UBERON:0002275!7.44e-08!3;UBERON:0005085!8.23e-08!13;UBERON:0002038!1.66e-07!3;UBERON:0002308!1.66e-07!3;UBERON:0009663!1.66e-07!3;UBERON:0009661!1.66e-07!3;UBERON:0006331!1.66e-07!3;UBERON:0000125!1.66e-07!3;UBERON:0004111!1.81e-07!122;UBERON:0000483!3.60e-07!181;UBERON:0000119!5.30e-07!183 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.35e-35,54;UBERON:0001049,5.52e-31,52;UBERON:0005068,5.52e-31,52;UBERON:0006241,5.52e-31,52;UBERON:0007135,5.52e-31,52;UBERON:0001017,4.36e-29,73;UBERON:0001016,3.72e-28,75;UBERON:0000955,7.54e-27,47;UBERON:0006238,7.54e-27,47;UBERON:0002346,3.20e-26,64;UBERON:0003075,3.20e-26,64;UBERON:0007284,3.20e-26,64;UBERON:0002616,6.00e-25,46;UBERON:0004121,1.20e-22,95;UBERON:0000924,1.20e-22,95;UBERON:0006601,1.20e-22,95;UBERON:0010371,2.65e-22,73;UBERON:0002020,1.43e-21,34;UBERON:0002021,1.51e-19,10;UBERON:0000411,1.51e-19,10;UBERON:0001950,1.51e-19,10;UBERON:0003080,1.38e-18,40;UBERON:0003528,6.19e-18,29;UBERON:0002791,6.19e-18,29;UBERON:0001893,6.19e-18,29;UBERON:0002780,9.47e-17,39;UBERON:0001890,9.47e-17,39;UBERON:0006240,9.47e-17,39;UBERON:0010314,1.53e-16,92;UBERON:0003056,3.36e-16,49;UBERON:0003076,1.05e-13,12;UBERON:0003057,1.05e-13,12;UBERON:0002619,1.14e-13,17;UBERON:0000956,3.52e-13,21;UBERON:0001869,3.52e-13,21;UBERON:0000203,3.52e-13,21;UBERON:0002950,5.45e-12,4;UBERON:0001891,5.45e-12,4;UBERON:0009616,5.45e-12,4;UBERON:0010286,5.45e-12,4;UBERON:0000025,3.70e-11,114;UBERON:0004111,4.59e-10,122;UBERON:0004684,1.12e-09,3;UBERON:0002275,1.12e-09,3;UBERON:0002038,3.16e-09,3;UBERON:0009663,3.16e-09,3;UBERON:0009661,3.16e-09,3;UBERON:0000125,3.16e-09,3;UBERON:0002308,3.16e-09,3;UBERON:0004733,4.22e-08,6;UBERON:0004732,4.22e-08,6;UBERON:0002028,4.22e-08,6;UBERON:0007277,4.22e-08,6;UBERON:0001896,2.63e-07,2;UBERON:0002298,2.63e-07,2;UBERON:0005290,2.63e-07,2;UBERON:0010096,2.63e-07,2;UBERON:0011216,3.40e-07,194;UBERON:0002240,3.89e-07,6;UBERON:0005174,3.89e-07,6;UBERON:0001137,3.89e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38121212422995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42825492201902,1.76694832761291,0,0,0,15.4162233399144,9.19348834213351,13.2101618600369,0,0,0,5.862842979029,6.75315132038016,10.3902808488231,1.17851434189467,0.711858403995515,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.44117753425404,4.60782754989601,0,0,0,0,15.2786452192919,14.1825186873774,0,6.95297280769106,3.58001640262463,14.1295870300501,12.6548185192851,0,0,0,0.841767423545896,0.130120442962704,0.229902104433473,0.540186389416048,0,0.612328492361951,0.12811372028485,0.281105173679186,1.55222022443409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.46304768538573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.5642402681322,22.8562788854796,0,0,0,0,0,0,0,0,0,0,0,4.81981974632711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.1911290598812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95326289831947,1.84130094602871,0.572895513439397,1.3748254587495,4.11049511862385,2.2661816921691,4.72515750162264,3.15224842256954,4.53142408984205,3.10656187051092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@St18 | |||
}} |
Revision as of 20:42, 13 September 2013
Short description: | p3@St18 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_St18_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 0bp_to_ENSMUST00000131494_5end |
EntrezGene: | St18 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 1.12e-09 | 3 |
neuron of the substantia nigra | 3.16e-09 | 3 |
CNS neuron (sensu Vertebrata) | 3.22e-08 | 23 |
neuroblast (sensu Vertebrata) | 3.22e-08 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.