FFCP PHASE1:Mm9::chr8:121970938..121971035,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=117148|HGNC=|MCL_coexpression_id=2959|UniProt=Q91ZP9|association_with_transcript=319bp_to_ENSMUST00000098363,NM_054095,uc009npq.1_5end|description=CAGE_peak_1_at_Necab2_5end|id=chr8:121970938..121971035,+|ontology_enrichment_celltype=CL:0000117!2.33e-13!23;CL:0000337!2.33e-13!23;CL:0000221!1.60e-09!44;CL:0000133!1.60e-09!44;CL:0002319!3.06e-09!43;CL:0000540!8.12e-09!33;CL:0000047!8.12e-09!33;CL:0000031!8.12e-09!33;CL:0000404!8.12e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.01e-15,23;CL:0000337,1.01e-15,23;CL:0000221,1.16e-09,44;CL:0000133,1.16e-09,44;CL:0000540,2.20e-09,33;CL:0000047,2.20e-09,33;CL:0000031,2.20e-09,33;CL:0000404,2.20e-09,33;CL:0002319,2.61e-09,43;CL:0000393,8.62e-07,39;CL:0000211,8.62e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!5.49e-32!71;UBERON:0003075!5.49e-32!71;UBERON:0007284!5.49e-32!71;UBERON:0000033!1.58e-28!63;UBERON:0004121!1.21e-27!102;UBERON:0000924!1.21e-27!102;UBERON:0006601!1.21e-27!102;UBERON:0001049!2.68e-26!52;UBERON:0005068!2.68e-26!52;UBERON:0006241!2.68e-26!52;UBERON:0007135!2.68e-26!52;UBERON:0001017!2.82e-26!73;UBERON:0005743!2.82e-26!73;UBERON:0000073!7.33e-26!75;UBERON:0001016!7.33e-26!75;UBERON:0003056!5.81e-25!49;UBERON:0000955!9.30e-25!50;UBERON:0006238!9.30e-25!50;UBERON:0002616!4.82e-24!49;UBERON:0003080!4.52e-20!40;UBERON:0002780!1.95e-19!39;UBERON:0001890!1.95e-19!39;UBERON:0006240!1.95e-19!39;UBERON:0002020!4.64e-18!34;UBERON:0002791!2.21e-14!29;UBERON:0003528!2.21e-14!29;UBERON:0001893!2.21e-14!29;UBERON:0007811!5.00e-14!86;UBERON:0000153!8.54e-13!94;UBERON:0000956!5.25e-09!21;UBERON:0001869!5.25e-09!21;UBERON:0000203!5.25e-09!21;UBERON:0002619!1.16e-08!17;UBERON:0002420!5.97e-07!8;UBERON:0007245!5.97e-07!8;UBERON:0010009!5.97e-07!8;UBERON:0010011!5.97e-07!8;UBERON:0000454!5.97e-07!8;UBERON:0003076!9.33e-07!12;UBERON:0003057!9.33e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.30e-35,64;UBERON:0003075,4.30e-35,64;UBERON:0007284,4.30e-35,64;UBERON:0000073,2.67e-33,54;UBERON:0003056,3.08e-31,49;UBERON:0001049,4.95e-31,52;UBERON:0005068,4.95e-31,52;UBERON:0006241,4.95e-31,52;UBERON:0007135,4.95e-31,52;UBERON:0010371,2.09e-30,73;UBERON:0001017,3.80e-30,73;UBERON:0004121,1.15e-29,95;UBERON:0000924,1.15e-29,95;UBERON:0006601,1.15e-29,95;UBERON:0001016,9.44e-29,75;UBERON:0010314,2.70e-27,92;UBERON:0000955,4.84e-26,47;UBERON:0006238,4.84e-26,47;UBERON:0002616,3.90e-25,46;UBERON:0003080,9.79e-25,40;UBERON:0002780,6.77e-24,39;UBERON:0001890,6.77e-24,39;UBERON:0006240,6.77e-24,39;UBERON:0002020,5.07e-22,34;UBERON:0003528,3.46e-17,29;UBERON:0002791,3.46e-17,29;UBERON:0001893,3.46e-17,29;UBERON:0002619,4.75e-11,17;UBERON:0000956,3.48e-10,21;UBERON:0001869,3.48e-10,21;UBERON:0000203,3.48e-10,21;UBERON:0002420,9.05e-09,8;UBERON:0007245,9.05e-09,8;UBERON:0010009,9.05e-09,8;UBERON:0010011,9.05e-09,8;UBERON:0000454,9.05e-09,8;UBERON:0002021,4.72e-08,10;UBERON:0000411,4.72e-08,10;UBERON:0001950,4.72e-08,10;UBERON:0001894,1.36e-07,10;UBERON:0006222,1.36e-07,10;UBERON:0000970,4.45e-07,9;UBERON:0000019,4.45e-07,9;UBERON:0000047,4.45e-07,9;UBERON:0010312,4.45e-07,9;UBERON:0004088,4.45e-07,9;UBERON:0002104,4.45e-07,9;UBERON:0001456,4.45e-07,9;UBERON:0003072,4.45e-07,9;UBERON:0004128,4.45e-07,9;UBERON:0003071,4.45e-07,9;UBERON:0002240,5.88e-07,6;UBERON:0005174,5.88e-07,6;UBERON:0001137,5.88e-07,6;UBERON:0000020,8.77e-07,12;UBERON:0001032,8.77e-07,12;UBERON:0004456,8.77e-07,12;UBERON:0003076,9.64e-07,12;UBERON:0003057,9.64e-07,12|phase1_expression=2.08193501236232,0,0,0,0,0,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,4.67738095830884,0,0,0,0,0,0,0,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,1.52617609466313,1.31811709640683,1.94429899074283,0.279972843250725,0,0,0,0.336093799142464,0,0,0,16.1853168687678,22.7466121086974,19.6487735086916,0.338844532069132,0,0,0,0,2.39680088414724,1.92109152660777,0.622137673850866,0.270011876663381,1.05162480675691,27.9937964715728,27.6085676189517,2.32732518508413,2.77951865952885,1.83843757322004,16.5173821499083,40.2215114968341,26.7275367865864,25.3221672441972,27.2633177935181,20.3156214517136,19.821992929098,29.826418331679,21.2389564409766,25.3380583507354,28.4743361598206,21.2495368240843,0.227178579999552,0.226714680320357,0,0,0,0,0,0,0.983110940922263,0,0,0,2.11265129665021,0,0,7.11066703153331,0,0,0,1.02765491747154,0,3.85949561568544,5.55153045651635,6.08930956624282,5.07354093963329,4.22023393547343,4.11560474974967,2.01066546127481,0,0.144599356919912,0,0,0,0,0,0.585561594023094,0.83778682725382,0,0,0,0,10.7849260371472,79.1476042876224,9.80103946480342,14.0797699355744,12.7857728665165,36.7784838870421,43.1561759760235,0.203678727700633,0.124406970610093,0.252722758433675,2.52530227063769,17.4361393570023,10.3455946995063,6.84236093260327,7.53524089178575,5.8511389270142,4.74020765053944,4.31027932974753,6.72628763921441,0.646703978798527,0.756424320671277,0.175951124163949,0.43839146485515,0.278047249225598,0,0,0.796137067273973,0,0,0,0.207125772535502,0.469052119962192,0,0,0,0,0,0,0,0,0,0,0,0,0,23.3421842906181,7.71784592844633,0,0,0.213288250535234,1.16118335930219,0.38660238396628,0,0.444756087689741,0.190225626112559,0.474529061544512,0.494096864172033,0.251335208800269,0.596869416123452,0.38992817423824,0,0,0.199141273254367,1.13800740571849,0.456994050438915,0,0.407302655690628,0,0.0701358198903186,0,0,0,0.123397163921801,0,0.166845105716094,0,0,0,0,0,0,0.162135226775035,0,0,0.372140947668503,0.312037673114561,0,0,0,0,0.568474235311454,0,0.339490171550376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4495530989013,15.8235776899474,0,0,0,0,0,0,0,0.283076530788832,0.404810701674894,0.584511715822624,0.395287777946524,17.3513510867776,0.141940085208269,0.890328018336276,0.977321756121456,0,0,0.242780636154981,0,0.188605079755898,0.295301892880773,0.614870295887855,0.258428293168221,0,0.712994756769443,0,0,0,9.87274856685985,5.04171063287669,2.71653235943784,1.71469628025274,3.54680467284547,5.88617098086833,6.58196082408484,5.17590413494819,0.23467170806371,0,0,0,0,0,0,0,0,7.97328798645192,0,0,0,0,0.136694227721025,0,0,0,0,0.954670618015114,0.790839983952838,0.406638934253697,0.324016022465404,0.418176592028937,1.31017538247707,0.404593039154462,0.661227645802687,0.785267825952089,0.129614973291793,0,0,0.448549638131936,0.496375471371293,0.583353565032143,1.03327858782185,0.844780627453891,0.469428954583016,0.13020438484395,1.36317147753424,0.483168241652012,0.288030006257865,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0.665957860122194,2.9605572681127,1.00730769818447,0.19318959403219,0,0.36630324853453,0,0,11.8597886949584,8.28585425712918,5.15605962095457,9.10821866421544,4.11049511862385,7.55393897389701,5.40018000185445,6.75481804836331,7.70342095273148,9.31968561153276,2.69847103718859,3.99024873401031,1.53660245178721,1.94485373654635,3.5634237646757,4.22840069435032,1.77797382241292,1.64828045791115,1.60459604795908,4.29585259998456,1.52087579934144,2.26351609663291,2.90288673156635,2.04880487695582,2.1825478203133,1.42888107384922,2.43357084484197,2.70072908649187,1.23625770240992,1.47198920134397,1.37147700954166,2.30718548007139,0.953744759789284,1.74415699958794,1.41164070622996,1.86152137361688,2.37806364734604,1.05227884575137,1.62964936615034,0.561142271657738,1.66089025373844,3.34915240076916,0.409231043169689,3.71848418846318,1.35034627686799,5.74564329257276,0.935726433781634,2.14871054048298,0.765153328275374,0.661774257358546,0.231867835620421|short_description=p1@Necab2}} | ||
|EntrezGene=117148 | |||
|HGNC= | |||
|MCL_coexpression_id=2959 | |||
|UniProt=Q91ZP9 | |||
|association_with_transcript=319bp_to_ENSMUST00000098363,NM_054095,uc009npq.1_5end | |||
|description=CAGE_peak_1_at_Necab2_5end | |||
|id=chr8:121970938..121971035,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.33e-13!23;CL:0000337!2.33e-13!23;CL:0000221!1.60e-09!44;CL:0000133!1.60e-09!44;CL:0002319!3.06e-09!43;CL:0000540!8.12e-09!33;CL:0000047!8.12e-09!33;CL:0000031!8.12e-09!33;CL:0000404!8.12e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.01e-15,23;CL:0000337,1.01e-15,23;CL:0000221,1.16e-09,44;CL:0000133,1.16e-09,44;CL:0000540,2.20e-09,33;CL:0000047,2.20e-09,33;CL:0000031,2.20e-09,33;CL:0000404,2.20e-09,33;CL:0002319,2.61e-09,43;CL:0000393,8.62e-07,39;CL:0000211,8.62e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!5.49e-32!71;UBERON:0003075!5.49e-32!71;UBERON:0007284!5.49e-32!71;UBERON:0000033!1.58e-28!63;UBERON:0004121!1.21e-27!102;UBERON:0000924!1.21e-27!102;UBERON:0006601!1.21e-27!102;UBERON:0001049!2.68e-26!52;UBERON:0005068!2.68e-26!52;UBERON:0006241!2.68e-26!52;UBERON:0007135!2.68e-26!52;UBERON:0001017!2.82e-26!73;UBERON:0005743!2.82e-26!73;UBERON:0000073!7.33e-26!75;UBERON:0001016!7.33e-26!75;UBERON:0003056!5.81e-25!49;UBERON:0000955!9.30e-25!50;UBERON:0006238!9.30e-25!50;UBERON:0002616!4.82e-24!49;UBERON:0003080!4.52e-20!40;UBERON:0002780!1.95e-19!39;UBERON:0001890!1.95e-19!39;UBERON:0006240!1.95e-19!39;UBERON:0002020!4.64e-18!34;UBERON:0002791!2.21e-14!29;UBERON:0003528!2.21e-14!29;UBERON:0001893!2.21e-14!29;UBERON:0007811!5.00e-14!86;UBERON:0000153!8.54e-13!94;UBERON:0000956!5.25e-09!21;UBERON:0001869!5.25e-09!21;UBERON:0000203!5.25e-09!21;UBERON:0002619!1.16e-08!17;UBERON:0002420!5.97e-07!8;UBERON:0007245!5.97e-07!8;UBERON:0010009!5.97e-07!8;UBERON:0010011!5.97e-07!8;UBERON:0000454!5.97e-07!8;UBERON:0003076!9.33e-07!12;UBERON:0003057!9.33e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.30e-35,64;UBERON:0003075,4.30e-35,64;UBERON:0007284,4.30e-35,64;UBERON:0000073,2.67e-33,54;UBERON:0003056,3.08e-31,49;UBERON:0001049,4.95e-31,52;UBERON:0005068,4.95e-31,52;UBERON:0006241,4.95e-31,52;UBERON:0007135,4.95e-31,52;UBERON:0010371,2.09e-30,73;UBERON:0001017,3.80e-30,73;UBERON:0004121,1.15e-29,95;UBERON:0000924,1.15e-29,95;UBERON:0006601,1.15e-29,95;UBERON:0001016,9.44e-29,75;UBERON:0010314,2.70e-27,92;UBERON:0000955,4.84e-26,47;UBERON:0006238,4.84e-26,47;UBERON:0002616,3.90e-25,46;UBERON:0003080,9.79e-25,40;UBERON:0002780,6.77e-24,39;UBERON:0001890,6.77e-24,39;UBERON:0006240,6.77e-24,39;UBERON:0002020,5.07e-22,34;UBERON:0003528,3.46e-17,29;UBERON:0002791,3.46e-17,29;UBERON:0001893,3.46e-17,29;UBERON:0002619,4.75e-11,17;UBERON:0000956,3.48e-10,21;UBERON:0001869,3.48e-10,21;UBERON:0000203,3.48e-10,21;UBERON:0002420,9.05e-09,8;UBERON:0007245,9.05e-09,8;UBERON:0010009,9.05e-09,8;UBERON:0010011,9.05e-09,8;UBERON:0000454,9.05e-09,8;UBERON:0002021,4.72e-08,10;UBERON:0000411,4.72e-08,10;UBERON:0001950,4.72e-08,10;UBERON:0001894,1.36e-07,10;UBERON:0006222,1.36e-07,10;UBERON:0000970,4.45e-07,9;UBERON:0000019,4.45e-07,9;UBERON:0000047,4.45e-07,9;UBERON:0010312,4.45e-07,9;UBERON:0004088,4.45e-07,9;UBERON:0002104,4.45e-07,9;UBERON:0001456,4.45e-07,9;UBERON:0003072,4.45e-07,9;UBERON:0004128,4.45e-07,9;UBERON:0003071,4.45e-07,9;UBERON:0002240,5.88e-07,6;UBERON:0005174,5.88e-07,6;UBERON:0001137,5.88e-07,6;UBERON:0000020,8.77e-07,12;UBERON:0001032,8.77e-07,12;UBERON:0004456,8.77e-07,12;UBERON:0003076,9.64e-07,12;UBERON:0003057,9.64e-07,12 | |||
|phase1_expression=2.08193501236232,0,0,0,0,0,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,4.67738095830884,0,0,0,0,0,0,0,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,1.52617609466313,1.31811709640683,1.94429899074283,0.279972843250725,0,0,0,0.336093799142464,0,0,0,16.1853168687678,22.7466121086974,19.6487735086916,0.338844532069132,0,0,0,0,2.39680088414724,1.92109152660777,0.622137673850866,0.270011876663381,1.05162480675691,27.9937964715728,27.6085676189517,2.32732518508413,2.77951865952885,1.83843757322004,16.5173821499083,40.2215114968341,26.7275367865864,25.3221672441972,27.2633177935181,20.3156214517136,19.821992929098,29.826418331679,21.2389564409766,25.3380583507354,28.4743361598206,21.2495368240843,0.227178579999552,0.226714680320357,0,0,0,0,0,0,0.983110940922263,0,0,0,2.11265129665021,0,0,7.11066703153331,0,0,0,1.02765491747154,0,3.85949561568544,5.55153045651635,6.08930956624282,5.07354093963329,4.22023393547343,4.11560474974967,2.01066546127481,0,0.144599356919912,0,0,0,0,0,0.585561594023094,0.83778682725382,0,0,0,0,10.7849260371472,79.1476042876224,9.80103946480342,14.0797699355744,12.7857728665165,36.7784838870421,43.1561759760235,0.203678727700633,0.124406970610093,0.252722758433675,2.52530227063769,17.4361393570023,10.3455946995063,6.84236093260327,7.53524089178575,5.8511389270142,4.74020765053944,4.31027932974753,6.72628763921441,0.646703978798527,0.756424320671277,0.175951124163949,0.43839146485515,0.278047249225598,0,0,0.796137067273973,0,0,0,0.207125772535502,0.469052119962192,0,0,0,0,0,0,0,0,0,0,0,0,0,23.3421842906181,7.71784592844633,0,0,0.213288250535234,1.16118335930219,0.38660238396628,0,0.444756087689741,0.190225626112559,0.474529061544512,0.494096864172033,0.251335208800269,0.596869416123452,0.38992817423824,0,0,0.199141273254367,1.13800740571849,0.456994050438915,0,0.407302655690628,0,0.0701358198903186,0,0,0,0.123397163921801,0,0.166845105716094,0,0,0,0,0,0,0.162135226775035,0,0,0.372140947668503,0.312037673114561,0,0,0,0,0.568474235311454,0,0.339490171550376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4495530989013,15.8235776899474,0,0,0,0,0,0,0,0.283076530788832,0.404810701674894,0.584511715822624,0.395287777946524,17.3513510867776,0.141940085208269,0.890328018336276,0.977321756121456,0,0,0.242780636154981,0,0.188605079755898,0.295301892880773,0.614870295887855,0.258428293168221,0,0.712994756769443,0,0,0,9.87274856685985,5.04171063287669,2.71653235943784,1.71469628025274,3.54680467284547,5.88617098086833,6.58196082408484,5.17590413494819,0.23467170806371,0,0,0,0,0,0,0,0,7.97328798645192,0,0,0,0,0.136694227721025,0,0,0,0,0.954670618015114,0.790839983952838,0.406638934253697,0.324016022465404,0.418176592028937,1.31017538247707,0.404593039154462,0.661227645802687,0.785267825952089,0.129614973291793,0,0,0.448549638131936,0.496375471371293,0.583353565032143,1.03327858782185,0.844780627453891,0.469428954583016,0.13020438484395,1.36317147753424,0.483168241652012,0.288030006257865,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0.665957860122194,2.9605572681127,1.00730769818447,0.19318959403219,0,0.36630324853453,0,0,11.8597886949584,8.28585425712918,5.15605962095457,9.10821866421544,4.11049511862385,7.55393897389701,5.40018000185445,6.75481804836331,7.70342095273148,9.31968561153276,2.69847103718859,3.99024873401031,1.53660245178721,1.94485373654635,3.5634237646757,4.22840069435032,1.77797382241292,1.64828045791115,1.60459604795908,4.29585259998456,1.52087579934144,2.26351609663291,2.90288673156635,2.04880487695582,2.1825478203133,1.42888107384922,2.43357084484197,2.70072908649187,1.23625770240992,1.47198920134397,1.37147700954166,2.30718548007139,0.953744759789284,1.74415699958794,1.41164070622996,1.86152137361688,2.37806364734604,1.05227884575137,1.62964936615034,0.561142271657738,1.66089025373844,3.34915240076916,0.409231043169689,3.71848418846318,1.35034627686799,5.74564329257276,0.935726433781634,2.14871054048298,0.765153328275374,0.661774257358546,0.231867835620421 | |||
|short_description=p1@Necab2 | |||
}} |
Revision as of 14:55, 14 September 2013
Short description: | p1@Necab2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Necab2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2959 |
Association with transcript: | 319bp_to_ENSMUST00000098363, NM_054095, uc009npq.1_5end |
EntrezGene: | Necab2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.01e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.01e-15 | 23 |
ectodermal cell | 1.16e-09 | 44 |
neurectodermal cell | 1.16e-09 | 44 |
neuron | 2.20e-09 | 33 |
neuronal stem cell | 2.20e-09 | 33 |
neuroblast | 2.20e-09 | 33 |
electrically signaling cell | 2.20e-09 | 33 |
neural cell | 2.61e-09 | 43 |
electrically responsive cell | 8.62e-07 | 39 |
electrically active cell | 8.62e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.