FFCP PHASE1:Mm9::chr19:27291591..27291621,+: Difference between revisions
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{{FFCP|EntrezGene=22359|HGNC=|MCL_coexpression_id=2|UniProt=E9Q643,Q91YY0,P98156,Q3UVX6|association_with_transcript=81bp_to_ENSMUST00000164746,ENSMUST00000172302,NM_001161420,NM_013703,uc008hbt.2,uc008hbu.2_5end|description=CAGE_peak_5_at_Vldlr_5end|id=chr19:27291591..27291621,+|ontology_enrichment_celltype=CL:0000117!3.26e-11!23;CL:0000337!3.26e-11!23;CL:0000540!1.03e-08!33;CL:0000047!1.03e-08!33;CL:0000031!1.03e-08!33;CL:0000404!1.03e-08!33;CL:0000393!1.59e-07!39;CL:0000211!1.59e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.93e-17,23;CL:0000337,3.93e-17,23;CL:0000540,1.68e-10,33;CL:0000047,1.68e-10,33;CL:0000031,1.68e-10,33;CL:0000404,1.68e-10,33;CL:0000393,3.38e-08,39;CL:0000211,3.38e-08,39;CL:0002319,4.91e-07,43;CL:0000221,8.83e-07,44;CL:0000133,8.83e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.62e-19!75;UBERON:0001016!1.62e-19!75;UBERON:0001017!2.10e-19!73;UBERON:0005743!2.10e-19!73;UBERON:0000033!5.47e-19!63;UBERON:0001049!2.39e-18!52;UBERON:0005068!2.39e-18!52;UBERON:0006241!2.39e-18!52;UBERON:0007135!2.39e-18!52;UBERON:0000955!1.14e-17!50;UBERON:0006238!1.14e-17!50;UBERON:0002616!5.78e-17!49;UBERON:0002020!8.91e-17!34;UBERON:0004121!1.44e-16!102;UBERON:0000924!1.44e-16!102;UBERON:0006601!1.44e-16!102;UBERON:0002346!5.39e-16!71;UBERON:0003075!5.39e-16!71;UBERON:0007284!5.39e-16!71;UBERON:0003056!1.28e-15!49;UBERON:0003080!2.34e-14!40;UBERON:0002791!5.10e-14!29;UBERON:0003528!5.10e-14!29;UBERON:0001893!5.10e-14!29;UBERON:0002780!9.73e-14!39;UBERON:0001890!9.73e-14!39;UBERON:0006240!9.73e-14!39;UBERON:0000025!3.17e-13!114;UBERON:0004111!1.27e-12!122;UBERON:0000956!2.06e-09!21;UBERON:0001869!2.06e-09!21;UBERON:0000203!2.06e-09!21;UBERON:0002021!4.65e-09!10;UBERON:0000411!4.65e-09!10;UBERON:0001950!4.65e-09!10;UBERON:0007811!6.83e-09!86;UBERON:0002619!3.68e-08!17;UBERON:0000153!7.24e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.04e-35,54;UBERON:0001049,2.18e-32,52;UBERON:0005068,2.18e-32,52;UBERON:0006241,2.18e-32,52;UBERON:0007135,2.18e-32,52;UBERON:0001017,5.67e-32,73;UBERON:0001016,8.29e-31,75;UBERON:0002020,2.74e-29,34;UBERON:0000955,8.41e-27,47;UBERON:0006238,8.41e-27,47;UBERON:0002346,3.20e-26,64;UBERON:0003075,3.20e-26,64;UBERON:0007284,3.20e-26,64;UBERON:0002616,2.18e-25,46;UBERON:0010314,1.36e-23,92;UBERON:0003528,2.19e-23,29;UBERON:0002791,2.19e-23,29;UBERON:0001893,2.19e-23,29;UBERON:0004121,2.37e-23,95;UBERON:0000924,2.37e-23,95;UBERON:0006601,2.37e-23,95;UBERON:0003080,2.45e-22,40;UBERON:0010371,1.04e-21,73;UBERON:0002780,4.34e-21,39;UBERON:0001890,4.34e-21,39;UBERON:0006240,4.34e-21,39;UBERON:0003056,1.66e-18,49;UBERON:0002021,4.40e-18,10;UBERON:0000411,4.40e-18,10;UBERON:0001950,4.40e-18,10;UBERON:0000025,9.61e-18,114;UBERON:0004111,8.19e-16,122;UBERON:0002619,1.41e-15,17;UBERON:0000956,8.93e-14,21;UBERON:0001869,8.93e-14,21;UBERON:0000203,8.93e-14,21;UBERON:0002420,2.28e-11,8;UBERON:0007245,2.28e-11,8;UBERON:0010009,2.28e-11,8;UBERON:0010011,2.28e-11,8;UBERON:0000454,2.28e-11,8;UBERON:0003076,2.04e-10,12;UBERON:0003057,2.04e-10,12;UBERON:0000483,2.10e-08,174;UBERON:0002240,2.57e-08,6;UBERON:0005174,2.57e-08,6;UBERON:0001137,2.57e-08,6;UBERON:0000119,3.52e-08,176;UBERON:0000369,3.22e-07,5;UBERON:0002435,3.22e-07,5;UBERON:0000204,3.22e-07,5;UBERON:0010082,3.22e-07,5;UBERON:0001948,3.92e-07,5;UBERON:0002315,3.92e-07,5;UBERON:0002950,4.37e-07,4;UBERON:0001891,4.37e-07,4;UBERON:0009616,4.37e-07,4;UBERON:0010286,4.37e-07,4|phase1_expression=0.480446541314382,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.506884656097573,0.550640256485045,0,0,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,2.63011399117477,2.64495489636016,1.90149421051854,0,0,0,0,0,0,0.384218305321555,0.622137673850866,0.405017814995072,0.841299845405528,1.42825492201902,1.76694832761291,0.61245399607477,1.43768206527355,0,2.20231761998777,5.10749352340751,4.14737639791857,1.31886287730194,1.18933936683133,1.04182674111352,3.07101298901519,3.37657566019008,3.0559649555362,2.65165726926301,1.70846016958924,1.4911955666024,0.302904773332736,0.226714680320357,0,0.860423876981386,2.719885334831,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0,0,0,0.34255163915718,0,0.148442139064825,0.520455980298408,0,0,0,0,0.125666591329675,0,0.86759614151947,0.884610551949874,0.161766849947409,0,0,0,3.51336956413857,2.30391377494801,0.255457055208591,0,0,0,2.99581278809645,3.20250421973039,4.52355667606312,1.91206752211504,2.81287003063364,3.32460871295296,4.05603157669394,0.203678727700633,0.124406970610093,0.252722758433675,0.420883711772948,0,0.229902104433473,0.540186389416048,0.60281927134286,0.748401490664606,0.2562274405697,0.749613796477831,3.62184719034622,0,0,0,0,0,0,0.411564272815887,0.199034266818493,0,0,0,0.621377317606506,0.234526059981096,0.540186184383045,0.473489471170421,0.196764231747404,0.308534225774757,0.697601834251224,0.268273401399619,1.28441876603886,1.15191894939436,1.80584210487005,2.59420190546738,2.19299981137998,1.53685080703735,1.8788898626452,4.20579897128254,1.23485534855141,0,0,0,0,0.128867461322093,0.201683524623343,0,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0.569003702859245,0.456994050438915,1.1270773567308,0.814605311381257,0.969762435838129,0.631222379012867,0.379419222745544,0.295220295959204,0,0.616985819609003,0,0,0,0,0,0.241177159752417,0,0,0.324270453550071,0,0,0.372140947668503,0,0.252578877947112,0,0,0,0.37898282354097,0,0,0.234690248288502,0,0.714130922658041,1.17080188714679,0,0.221464689648775,0.478364305972461,0.163863314715738,0.172684981865896,0,0,0,0,0.275936746304732,1.76605648986571,1.05490517932983,0,2.52470927204373,0,0,0.646270193198397,0,0.222798674082394,0.283076530788832,0.404810701674894,0.292255857911312,0,4.81981974632711,0,0.178065603667255,0.325773918707152,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0.727067458955011,0.356497378384721,0,0,0,1.36175842301515,0,0,0.214337035031592,0,0.356737635204141,0.493647061806363,0.913394847343798,0.23467170806371,0.21183207086382,0,0,0.161464426695906,0.0603129249281559,0.119372344003136,0,0,2.03967832211561,0,0.206386867963223,0.185194527369712,0,0,0,0,0.419854356970974,0.138199973804424,0,0,0.203319467126849,0,0,0.218362563746178,0,0.165306911450672,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0.288030006257865,0,0.202725215290164,0,0,0,0.39736270956253,0,0,0,0,0,0.194915761479505,0,0,0.680191150845634,0,0,0,0.386379188064381,0.375364950902364,0.36630324853453,0,0,10.7302850097243,12.889106622201,13.7494923225455,14.2638141345261,5.48066015816514,12.0863023582352,13.5004500046361,9.00642406448441,7.25027854374727,7.24864436452548,0,1.19707462020309,0.170733605754134,0.729320151204882,0.209613162627982,0,0.888986911206461,0.618105171716683,0.64183841918363,0,0.25347929989024,0.754505365544305,0.468207537349412,0.384150914429216,0.402048282689293,0.952587382566147,0.695305955669133,0.38581844092741,0.412085900803307,0.441596760403192,1.02860775715625,0.532427418478012,0,0.145346416632329,0.188218760830661,0.338458431566706,0.182927972872773,0.263069711437843,0.271608227691724,1.12228454331548,0.237270036248348,0.689531376628944,0.818462086339379,0.309873682371932,0.192906610981141,0.749431733813838,0.233931608445408,0.214871054048298,1.14772999241306,0.220591419119515,0.927471342481686|short_description=p5@Vldlr}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:22359 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q643,uniprot:Q91YY0,uniprot:P98156,uniprot:Q3UVX6 | |||
|association_with_transcript=81bp_to_ENSMUST00000164746,ENSMUST00000172302,NM_001161420,NM_013703,uc008hbt.2,uc008hbu.2_5end | |||
|cluster_id=chr19:27291591..27291621,+ | |||
|description=CAGE_peak_5_at_Vldlr_5end | |||
|id=chr19:27291591..27291621,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.26e-11!23;CL:0000337!3.26e-11!23;CL:0000540!1.03e-08!33;CL:0000047!1.03e-08!33;CL:0000031!1.03e-08!33;CL:0000404!1.03e-08!33;CL:0000393!1.59e-07!39;CL:0000211!1.59e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.93e-17,23;CL:0000337,3.93e-17,23;CL:0000540,1.68e-10,33;CL:0000047,1.68e-10,33;CL:0000031,1.68e-10,33;CL:0000404,1.68e-10,33;CL:0000393,3.38e-08,39;CL:0000211,3.38e-08,39;CL:0002319,4.91e-07,43;CL:0000221,8.83e-07,44;CL:0000133,8.83e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.62e-19!75;UBERON:0001016!1.62e-19!75;UBERON:0001017!2.10e-19!73;UBERON:0005743!2.10e-19!73;UBERON:0000033!5.47e-19!63;UBERON:0001049!2.39e-18!52;UBERON:0005068!2.39e-18!52;UBERON:0006241!2.39e-18!52;UBERON:0007135!2.39e-18!52;UBERON:0000955!1.14e-17!50;UBERON:0006238!1.14e-17!50;UBERON:0002616!5.78e-17!49;UBERON:0002020!8.91e-17!34;UBERON:0004121!1.44e-16!102;UBERON:0000924!1.44e-16!102;UBERON:0006601!1.44e-16!102;UBERON:0002346!5.39e-16!71;UBERON:0003075!5.39e-16!71;UBERON:0007284!5.39e-16!71;UBERON:0003056!1.28e-15!49;UBERON:0003080!2.34e-14!40;UBERON:0002791!5.10e-14!29;UBERON:0003528!5.10e-14!29;UBERON:0001893!5.10e-14!29;UBERON:0002780!9.73e-14!39;UBERON:0001890!9.73e-14!39;UBERON:0006240!9.73e-14!39;UBERON:0000025!3.17e-13!114;UBERON:0004111!1.27e-12!122;UBERON:0000956!2.06e-09!21;UBERON:0001869!2.06e-09!21;UBERON:0000203!2.06e-09!21;UBERON:0002021!4.65e-09!10;UBERON:0000411!4.65e-09!10;UBERON:0001950!4.65e-09!10;UBERON:0007811!6.83e-09!86;UBERON:0002619!3.68e-08!17;UBERON:0000153!7.24e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.04e-35,54;UBERON:0001049,2.18e-32,52;UBERON:0005068,2.18e-32,52;UBERON:0006241,2.18e-32,52;UBERON:0007135,2.18e-32,52;UBERON:0001017,5.67e-32,73;UBERON:0001016,8.29e-31,75;UBERON:0002020,2.74e-29,34;UBERON:0000955,8.41e-27,47;UBERON:0006238,8.41e-27,47;UBERON:0002346,3.20e-26,64;UBERON:0003075,3.20e-26,64;UBERON:0007284,3.20e-26,64;UBERON:0002616,2.18e-25,46;UBERON:0010314,1.36e-23,92;UBERON:0003528,2.19e-23,29;UBERON:0002791,2.19e-23,29;UBERON:0001893,2.19e-23,29;UBERON:0004121,2.37e-23,95;UBERON:0000924,2.37e-23,95;UBERON:0006601,2.37e-23,95;UBERON:0003080,2.45e-22,40;UBERON:0010371,1.04e-21,73;UBERON:0002780,4.34e-21,39;UBERON:0001890,4.34e-21,39;UBERON:0006240,4.34e-21,39;UBERON:0003056,1.66e-18,49;UBERON:0002021,4.40e-18,10;UBERON:0000411,4.40e-18,10;UBERON:0001950,4.40e-18,10;UBERON:0000025,9.61e-18,114;UBERON:0004111,8.19e-16,122;UBERON:0002619,1.41e-15,17;UBERON:0000956,8.93e-14,21;UBERON:0001869,8.93e-14,21;UBERON:0000203,8.93e-14,21;UBERON:0002420,2.28e-11,8;UBERON:0007245,2.28e-11,8;UBERON:0010009,2.28e-11,8;UBERON:0010011,2.28e-11,8;UBERON:0000454,2.28e-11,8;UBERON:0003076,2.04e-10,12;UBERON:0003057,2.04e-10,12;UBERON:0000483,2.10e-08,174;UBERON:0002240,2.57e-08,6;UBERON:0005174,2.57e-08,6;UBERON:0001137,2.57e-08,6;UBERON:0000119,3.52e-08,176;UBERON:0000369,3.22e-07,5;UBERON:0002435,3.22e-07,5;UBERON:0000204,3.22e-07,5;UBERON:0010082,3.22e-07,5;UBERON:0001948,3.92e-07,5;UBERON:0002315,3.92e-07,5;UBERON:0002950,4.37e-07,4;UBERON:0001891,4.37e-07,4;UBERON:0009616,4.37e-07,4;UBERON:0010286,4.37e-07,4 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.506884656097573,0.550640256485045,0,0,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,2.63011399117477,2.64495489636016,1.90149421051854,0,0,0,0,0,0,0.384218305321555,0.622137673850866,0.405017814995072,0.841299845405528,1.42825492201902,1.76694832761291,0.61245399607477,1.43768206527355,0,2.20231761998777,5.10749352340751,4.14737639791857,1.31886287730194,1.18933936683133,1.04182674111352,3.07101298901519,3.37657566019008,3.0559649555362,2.65165726926301,1.70846016958924,1.4911955666024,0.302904773332736,0.226714680320357,0,0.860423876981386,2.719885334831,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0,0,0,0.34255163915718,0,0.148442139064825,0.520455980298408,0,0,0,0,0.125666591329675,0,0.86759614151947,0.884610551949874,0.161766849947409,0,0,0,3.51336956413857,2.30391377494801,0.255457055208591,0,0,0,2.99581278809645,3.20250421973039,4.52355667606312,1.91206752211504,2.81287003063364,3.32460871295296,4.05603157669394,0.203678727700633,0.124406970610093,0.252722758433675,0.420883711772948,0,0.229902104433473,0.540186389416048,0.60281927134286,0.748401490664606,0.2562274405697,0.749613796477831,3.62184719034622,0,0,0,0,0,0,0.411564272815887,0.199034266818493,0,0,0,0.621377317606506,0.234526059981096,0.540186184383045,0.473489471170421,0.196764231747404,0.308534225774757,0.697601834251224,0.268273401399619,1.28441876603886,1.15191894939436,1.80584210487005,2.59420190546738,2.19299981137998,1.53685080703735,1.8788898626452,4.20579897128254,1.23485534855141,0,0,0,0,0.128867461322093,0.201683524623343,0,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0.569003702859245,0.456994050438915,1.1270773567308,0.814605311381257,0.969762435838129,0.631222379012867,0.379419222745544,0.295220295959204,0,0.616985819609003,0,0,0,0,0,0.241177159752417,0,0,0.324270453550071,0,0,0.372140947668503,0,0.252578877947112,0,0,0,0.37898282354097,0,0,0.234690248288502,0,0.714130922658041,1.17080188714679,0,0.221464689648775,0.478364305972461,0.163863314715738,0.172684981865896,0,0,0,0,0.275936746304732,1.76605648986571,1.05490517932983,0,2.52470927204373,0,0,0.646270193198397,0,0.222798674082394,0.283076530788832,0.404810701674894,0.292255857911312,0,4.81981974632711,0,0.178065603667255,0.325773918707152,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0.727067458955011,0.356497378384721,0,0,0,1.36175842301515,0,0,0.214337035031592,0,0.356737635204141,0.493647061806363,0.913394847343798,0.23467170806371,0.21183207086382,0,0,0.161464426695906,0.0603129249281559,0.119372344003136,0,0,2.03967832211561,0,0.206386867963223,0.185194527369712,0,0,0,0,0.419854356970974,0.138199973804424,0,0,0.203319467126849,0,0,0.218362563746178,0,0.165306911450672,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0.288030006257865,0,0.202725215290164,0,0,0,0.39736270956253,0,0,0,0,0,0.194915761479505,0,0,0.680191150845634,0,0,0,0.386379188064381,0.375364950902364,0.36630324853453,0,0,10.7302850097243,12.889106622201,13.7494923225455,14.2638141345261,5.48066015816514,12.0863023582352,13.5004500046361,9.00642406448441,7.25027854374727,7.24864436452548,0,1.19707462020309,0.170733605754134,0.729320151204882,0.209613162627982,0,0.888986911206461,0.618105171716683,0.64183841918363,0,0.25347929989024,0.754505365544305,0.468207537349412,0.384150914429216,0.402048282689293,0.952587382566147,0.695305955669133,0.38581844092741,0.412085900803307,0.441596760403192,1.02860775715625,0.532427418478012,0,0.145346416632329,0.188218760830661,0.338458431566706,0.182927972872773,0.263069711437843,0.271608227691724,1.12228454331548,0.237270036248348,0.689531376628944,0.818462086339379,0.309873682371932,0.192906610981141,0.749431733813838,0.233931608445408,0.214871054048298,1.14772999241306,0.220591419119515,0.927471342481686 | |||
|short_description=p5@Vldlr | |||
}} |
Revision as of 20:05, 3 August 2015
Short description: | p5@Vldlr |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Vldlr_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 81bp_to_ENSMUST00000164746, ENSMUST00000172302, NM_001161420, NM_013703, uc008hbt.2, uc008hbu.2_5end |
EntrezGene: | 22359 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.93e-17 | 23 |
neuroblast (sensu Vertebrata) | 3.93e-17 | 23 |
neuron | 1.68e-10 | 33 |
neuronal stem cell | 1.68e-10 | 33 |
neuroblast | 1.68e-10 | 33 |
electrically signaling cell | 1.68e-10 | 33 |
electrically responsive cell | 3.38e-08 | 39 |
electrically active cell | 3.38e-08 | 39 |
neural cell | 4.91e-07 | 43 |
ectodermal cell | 8.83e-07 | 44 |
neurectodermal cell | 8.83e-07 | 44 |