FFCP PHASE1:Mm9::chr16:5885014..5885055,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=268859|HGNC=|MCL_coexpression_id=1|UniProt=Q9JJ43|association_with_transcript=128bp_to_NM_021477,uc007ycb.2,uc007ycc.2,uc012abb.1_5end|description=CAGE_peak_8_at_Rbfox1_5end|id=chr16:5885014..5885055,+|ontology_enrichment_celltype=CL:0000540!3.33e-16!33;CL:0000047!3.33e-16!33;CL:0000031!3.33e-16!33;CL:0000404!3.33e-16!33;CL:0000117!4.02e-15!23;CL:0000337!4.02e-15!23;CL:0000393!1.25e-11!39;CL:0000211!1.25e-11!39;CL:0002319!1.33e-10!43;CL:0000221!4.55e-10!44;CL:0000133!4.55e-10!44;CL:0000055!2.08e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,7.86e-23,23;CL:0000337,7.86e-23,23;CL:0000540,1.42e-22,33;CL:0000047,1.42e-22,33;CL:0000031,1.42e-22,33;CL:0000404,1.42e-22,33;CL:0000393,1.07e-17,39;CL:0000211,1.07e-17,39;CL:0002319,3.15e-15,43;CL:0000221,1.10e-14,44;CL:0000133,1.10e-14,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.62e-26!73;UBERON:0005743!1.62e-26!73;UBERON:0000073!9.91e-26!75;UBERON:0001016!9.91e-26!75;UBERON:0002346!1.03e-23!71;UBERON:0003075!1.03e-23!71;UBERON:0007284!1.03e-23!71;UBERON:0001049!8.20e-22!52;UBERON:0005068!8.20e-22!52;UBERON:0006241!8.20e-22!52;UBERON:0007135!8.20e-22!52;UBERON:0002020!4.04e-21!34;UBERON:0004121!1.46e-20!102;UBERON:0000924!1.46e-20!102;UBERON:0006601!1.46e-20!102;UBERON:0000955!2.68e-20!50;UBERON:0006238!2.68e-20!50;UBERON:0002616!1.62e-19!49;UBERON:0000033!1.20e-17!63;UBERON:0002791!1.43e-17!29;UBERON:0003528!1.43e-17!29;UBERON:0001893!1.43e-17!29;UBERON:0003080!3.72e-16!40;UBERON:0003056!4.27e-16!49;UBERON:0002780!1.90e-15!39;UBERON:0001890!1.90e-15!39;UBERON:0006240!1.90e-15!39;UBERON:0000956!1.73e-12!21;UBERON:0001869!1.73e-12!21;UBERON:0000203!1.73e-12!21;UBERON:0002619!5.64e-10!17;UBERON:0002021!3.29e-09!10;UBERON:0000411!3.29e-09!10;UBERON:0001950!3.29e-09!10;UBERON:0007811!1.29e-08!86;UBERON:0000153!7.31e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.90e-38,73;UBERON:0001016,1.42e-36,75;UBERON:0000073,2.07e-34,54;UBERON:0002020,3.28e-33,34;UBERON:0001049,1.93e-32,52;UBERON:0005068,1.93e-32,52;UBERON:0006241,1.93e-32,52;UBERON:0007135,1.93e-32,52;UBERON:0002346,1.33e-29,64;UBERON:0003075,1.33e-29,64;UBERON:0007284,1.33e-29,64;UBERON:0003528,1.33e-27,29;UBERON:0002791,1.33e-27,29;UBERON:0001893,1.33e-27,29;UBERON:0000955,4.31e-27,47;UBERON:0006238,4.31e-27,47;UBERON:0004121,1.35e-26,95;UBERON:0000924,1.35e-26,95;UBERON:0006601,1.35e-26,95;UBERON:0002616,6.67e-26,46;UBERON:0010371,3.62e-24,73;UBERON:0003080,7.42e-23,40;UBERON:0002780,9.18e-22,39;UBERON:0001890,9.18e-22,39;UBERON:0006240,9.18e-22,39;UBERON:0000956,1.41e-19,21;UBERON:0001869,1.41e-19,21;UBERON:0000203,1.41e-19,21;UBERON:0003056,4.39e-18,49;UBERON:0010314,4.99e-18,92;UBERON:0002619,1.30e-15,17;UBERON:0002021,1.50e-13,10;UBERON:0000411,1.50e-13,10;UBERON:0001950,1.50e-13,10;UBERON:0003076,6.87e-10,12;UBERON:0003057,6.87e-10,12;UBERON:0002420,4.82e-09,8;UBERON:0007245,4.82e-09,8;UBERON:0010009,4.82e-09,8;UBERON:0010011,4.82e-09,8;UBERON:0000454,4.82e-09,8;UBERON:0000025,6.07e-08,114;UBERON:0002240,1.11e-07,6;UBERON:0005174,1.11e-07,6;UBERON:0001137,1.11e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,2.21112554392781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04632921719196,2.11596391708813,2.53532561402472,0,0,0,0,0,0,0.384218305321555,4.14758449233911,4.3201900266141,2.52389953621658,4.85606673486466,4.8591079009355,2.20483438586917,1.91690942036473,7.35375029288017,1.10115880999389,8.93811366596314,8.1411462625809,4.08847491963601,4.20843160571084,4.16730696445408,6.14202597803038,5.06486349028512,4.5839474333043,6.77645746589436,7.68807076315156,6.89677949553612,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0.505524445014783,0.11418387971906,0,0,0.693941307064543,0.913396434936424,0.230615497256059,1.20578112442098,1.05829836422134,0,0,0.144599356919912,0,0,0,0,0,11.4184510834503,13.823482649688,0.255457055208591,0,0,0,7.48953197024113,7.77751024791665,4.39790232395025,13.5582969749976,8.69432554923124,6.44142938134636,9.5722345209977,0.305518091550949,0,0,0.420883711772948,0,0,0.180062129805349,0.60281927134286,0.340182495756639,0.2562274405697,0.374806898238915,1.81092359517311,0,0,0,0,0,0.348252166522167,0,0.398068533636986,0,0,0,0,0,0.180062061461015,0.23674473558521,0,0,0.232533944750408,0.268273401399619,0,0,0.32833492815819,0,0,0,0,10.3042074796422,5.65975368086064,0,0,0,0,0.128867461322093,0.201683524623343,0,0.380451252225118,0,0.164698954724011,0.502670417600539,0.795825888164603,0,0,0,0,0,0.456994050438915,0,0.610953983535943,0.581857461502877,0.210407459670956,0.0632365371242573,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.54587772942622,7.3843362553088,0,0,1.26203287766503,1.56175497718655,5.60100834105277,0.955875191810208,1.55959071857676,1.13230612315533,0,1.16902343164525,0.395287777946524,9.3183181762324,0.425820255624806,0.35613120733451,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0.18006109403131,0,0,0.177340233642274,0.356737635204141,0.329098041204242,0,0,0,0,0,0,0,0,0,0.582961673259701,6.67531087237835,0,0,0,0.188368457004691,0.136694227721025,0.228778173206523,0,0,0,0,0,0.406638934253697,0.216010681643603,0.209088296014469,0,0.134864346384821,0.165306911450672,0,0,0,0,0.149516546043979,0.827292452285488,0.388902376688095,0.258319646955462,0.675824501963113,0.117357238645754,0.13020438484395,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6835479080437,11.9684561491866,17.7597609166213,19.7631159695241,9.59115527678899,6.0431511791176,6.07520250208625,6.75481804836331,11.3285602246051,10.3552062350364,0,0,1.36586884603307,0.729320151204882,0.209613162627982,1.10306105070008,1.55572709461131,1.03017528619447,1.60459604795908,1.51618327058278,0.760437899670719,0.943131706930381,1.591905626988,1.47257850531199,1.20614484806788,1.90517476513229,1.50649623728312,1.92909220463705,0.824171801606613,1.17759136107518,0,0.532427418478012,0.953744759789284,1.16277133305863,1.59985946706062,1.52306294205018,1.09756783723664,0.526139422875686,2.17286582153379,1.68342681497322,1.18635018124174,0.886540341380071,2.04615521584845,0.77468420592983,1.15743966588685,1.74867404556562,1.16965804222704,0.859484216193193,0.382576664137687,0,0.231867835620421|short_description=p8@Rbfox1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:268859 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9JJ43 | |||
|association_with_transcript=128bp_to_NM_021477,uc007ycb.2,uc007ycc.2,uc012abb.1_5end | |||
|cluster_id=chr16:5885014..5885055,+ | |||
|description=CAGE_peak_8_at_Rbfox1_5end | |||
|id=chr16:5885014..5885055,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.33e-16!33;CL:0000047!3.33e-16!33;CL:0000031!3.33e-16!33;CL:0000404!3.33e-16!33;CL:0000117!4.02e-15!23;CL:0000337!4.02e-15!23;CL:0000393!1.25e-11!39;CL:0000211!1.25e-11!39;CL:0002319!1.33e-10!43;CL:0000221!4.55e-10!44;CL:0000133!4.55e-10!44;CL:0000055!2.08e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.86e-23,23;CL:0000337,7.86e-23,23;CL:0000540,1.42e-22,33;CL:0000047,1.42e-22,33;CL:0000031,1.42e-22,33;CL:0000404,1.42e-22,33;CL:0000393,1.07e-17,39;CL:0000211,1.07e-17,39;CL:0002319,3.15e-15,43;CL:0000221,1.10e-14,44;CL:0000133,1.10e-14,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.62e-26!73;UBERON:0005743!1.62e-26!73;UBERON:0000073!9.91e-26!75;UBERON:0001016!9.91e-26!75;UBERON:0002346!1.03e-23!71;UBERON:0003075!1.03e-23!71;UBERON:0007284!1.03e-23!71;UBERON:0001049!8.20e-22!52;UBERON:0005068!8.20e-22!52;UBERON:0006241!8.20e-22!52;UBERON:0007135!8.20e-22!52;UBERON:0002020!4.04e-21!34;UBERON:0004121!1.46e-20!102;UBERON:0000924!1.46e-20!102;UBERON:0006601!1.46e-20!102;UBERON:0000955!2.68e-20!50;UBERON:0006238!2.68e-20!50;UBERON:0002616!1.62e-19!49;UBERON:0000033!1.20e-17!63;UBERON:0002791!1.43e-17!29;UBERON:0003528!1.43e-17!29;UBERON:0001893!1.43e-17!29;UBERON:0003080!3.72e-16!40;UBERON:0003056!4.27e-16!49;UBERON:0002780!1.90e-15!39;UBERON:0001890!1.90e-15!39;UBERON:0006240!1.90e-15!39;UBERON:0000956!1.73e-12!21;UBERON:0001869!1.73e-12!21;UBERON:0000203!1.73e-12!21;UBERON:0002619!5.64e-10!17;UBERON:0002021!3.29e-09!10;UBERON:0000411!3.29e-09!10;UBERON:0001950!3.29e-09!10;UBERON:0007811!1.29e-08!86;UBERON:0000153!7.31e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.90e-38,73;UBERON:0001016,1.42e-36,75;UBERON:0000073,2.07e-34,54;UBERON:0002020,3.28e-33,34;UBERON:0001049,1.93e-32,52;UBERON:0005068,1.93e-32,52;UBERON:0006241,1.93e-32,52;UBERON:0007135,1.93e-32,52;UBERON:0002346,1.33e-29,64;UBERON:0003075,1.33e-29,64;UBERON:0007284,1.33e-29,64;UBERON:0003528,1.33e-27,29;UBERON:0002791,1.33e-27,29;UBERON:0001893,1.33e-27,29;UBERON:0000955,4.31e-27,47;UBERON:0006238,4.31e-27,47;UBERON:0004121,1.35e-26,95;UBERON:0000924,1.35e-26,95;UBERON:0006601,1.35e-26,95;UBERON:0002616,6.67e-26,46;UBERON:0010371,3.62e-24,73;UBERON:0003080,7.42e-23,40;UBERON:0002780,9.18e-22,39;UBERON:0001890,9.18e-22,39;UBERON:0006240,9.18e-22,39;UBERON:0000956,1.41e-19,21;UBERON:0001869,1.41e-19,21;UBERON:0000203,1.41e-19,21;UBERON:0003056,4.39e-18,49;UBERON:0010314,4.99e-18,92;UBERON:0002619,1.30e-15,17;UBERON:0002021,1.50e-13,10;UBERON:0000411,1.50e-13,10;UBERON:0001950,1.50e-13,10;UBERON:0003076,6.87e-10,12;UBERON:0003057,6.87e-10,12;UBERON:0002420,4.82e-09,8;UBERON:0007245,4.82e-09,8;UBERON:0010009,4.82e-09,8;UBERON:0010011,4.82e-09,8;UBERON:0000454,4.82e-09,8;UBERON:0000025,6.07e-08,114;UBERON:0002240,1.11e-07,6;UBERON:0005174,1.11e-07,6;UBERON:0001137,1.11e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,2.21112554392781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04632921719196,2.11596391708813,2.53532561402472,0,0,0,0,0,0,0.384218305321555,4.14758449233911,4.3201900266141,2.52389953621658,4.85606673486466,4.8591079009355,2.20483438586917,1.91690942036473,7.35375029288017,1.10115880999389,8.93811366596314,8.1411462625809,4.08847491963601,4.20843160571084,4.16730696445408,6.14202597803038,5.06486349028512,4.5839474333043,6.77645746589436,7.68807076315156,6.89677949553612,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0.505524445014783,0.11418387971906,0,0,0.693941307064543,0.913396434936424,0.230615497256059,1.20578112442098,1.05829836422134,0,0,0.144599356919912,0,0,0,0,0,11.4184510834503,13.823482649688,0.255457055208591,0,0,0,7.48953197024113,7.77751024791665,4.39790232395025,13.5582969749976,8.69432554923124,6.44142938134636,9.5722345209977,0.305518091550949,0,0,0.420883711772948,0,0,0.180062129805349,0.60281927134286,0.340182495756639,0.2562274405697,0.374806898238915,1.81092359517311,0,0,0,0,0,0.348252166522167,0,0.398068533636986,0,0,0,0,0,0.180062061461015,0.23674473558521,0,0,0.232533944750408,0.268273401399619,0,0,0.32833492815819,0,0,0,0,10.3042074796422,5.65975368086064,0,0,0,0,0.128867461322093,0.201683524623343,0,0.380451252225118,0,0.164698954724011,0.502670417600539,0.795825888164603,0,0,0,0,0,0.456994050438915,0,0.610953983535943,0.581857461502877,0.210407459670956,0.0632365371242573,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.54587772942622,7.3843362553088,0,0,1.26203287766503,1.56175497718655,5.60100834105277,0.955875191810208,1.55959071857676,1.13230612315533,0,1.16902343164525,0.395287777946524,9.3183181762324,0.425820255624806,0.35613120733451,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0.18006109403131,0,0,0.177340233642274,0.356737635204141,0.329098041204242,0,0,0,0,0,0,0,0,0,0.582961673259701,6.67531087237835,0,0,0,0.188368457004691,0.136694227721025,0.228778173206523,0,0,0,0,0,0.406638934253697,0.216010681643603,0.209088296014469,0,0.134864346384821,0.165306911450672,0,0,0,0,0.149516546043979,0.827292452285488,0.388902376688095,0.258319646955462,0.675824501963113,0.117357238645754,0.13020438484395,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6835479080437,11.9684561491866,17.7597609166213,19.7631159695241,9.59115527678899,6.0431511791176,6.07520250208625,6.75481804836331,11.3285602246051,10.3552062350364,0,0,1.36586884603307,0.729320151204882,0.209613162627982,1.10306105070008,1.55572709461131,1.03017528619447,1.60459604795908,1.51618327058278,0.760437899670719,0.943131706930381,1.591905626988,1.47257850531199,1.20614484806788,1.90517476513229,1.50649623728312,1.92909220463705,0.824171801606613,1.17759136107518,0,0.532427418478012,0.953744759789284,1.16277133305863,1.59985946706062,1.52306294205018,1.09756783723664,0.526139422875686,2.17286582153379,1.68342681497322,1.18635018124174,0.886540341380071,2.04615521584845,0.77468420592983,1.15743966588685,1.74867404556562,1.16965804222704,0.859484216193193,0.382576664137687,0,0.231867835620421 | |||
|short_description=p8@Rbfox1 | |||
}} |
Revision as of 00:14, 4 August 2015
Short description: | p8@Rbfox1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Rbfox1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 128bp_to_NM_021477, uc007ycb.2, uc007ycc.2, uc012abb.1_5end |
EntrezGene: | 268859 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.86e-23 | 23 |
neuroblast (sensu Vertebrata) | 7.86e-23 | 23 |
neuron | 1.42e-22 | 33 |
neuronal stem cell | 1.42e-22 | 33 |
neuroblast | 1.42e-22 | 33 |
electrically signaling cell | 1.42e-22 | 33 |
electrically responsive cell | 1.07e-17 | 39 |
electrically active cell | 1.07e-17 | 39 |
neural cell | 3.15e-15 | 43 |
ectodermal cell | 1.10e-14 | 44 |
neurectodermal cell | 1.10e-14 | 44 |