FFCP PHASE1:Mm9::chr16:42340809..42340836,-: Difference between revisions
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{{FFCP|EntrezGene=14432|HGNC=|MCL_coexpression_id=13|UniProt=P06837|association_with_transcript=-45bp_to_ENSMUST00000102817,NM_008083,uc007zfv.1_5end|description=CAGE_peak_3_at_Gap43_5end|id=chr16:42340809..42340836,-|ontology_enrichment_celltype=CL:0000540!5.90e-20!33;CL:0000047!5.90e-20!33;CL:0000031!5.90e-20!33;CL:0000404!5.90e-20!33;CL:0000117!2.42e-17!23;CL:0000337!2.42e-17!23;CL:0000393!2.62e-14!39;CL:0000211!2.62e-14!39;CL:0002319!9.64e-14!43;CL:0000221!1.31e-13!44;CL:0000133!1.31e-13!44;CL:0000055!1.27e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,5.88e-33,23;CL:0000337,5.88e-33,23;CL:0000540,4.89e-29,33;CL:0000047,4.89e-29,33;CL:0000031,4.89e-29,33;CL:0000404,4.89e-29,33;CL:0000393,2.87e-23,39;CL:0000211,2.87e-23,39;CL:0002319,2.50e-20,43;CL:0000221,1.12e-19,44;CL:0000133,1.12e-19,44;CL:0002321,1.87e-09,70;CL:0002609,1.65e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.90e-28!73;UBERON:0005743!4.90e-28!73;UBERON:0000073!6.76e-28!75;UBERON:0001016!6.76e-28!75;UBERON:0004121!1.06e-25!102;UBERON:0000924!1.06e-25!102;UBERON:0006601!1.06e-25!102;UBERON:0002346!1.49e-22!71;UBERON:0003075!1.49e-22!71;UBERON:0007284!1.49e-22!71;UBERON:0000033!4.30e-22!63;UBERON:0001049!2.11e-21!52;UBERON:0005068!2.11e-21!52;UBERON:0006241!2.11e-21!52;UBERON:0007135!2.11e-21!52;UBERON:0000955!3.59e-20!50;UBERON:0006238!3.59e-20!50;UBERON:0002616!4.67e-20!49;UBERON:0002020!7.64e-20!34;UBERON:0003056!1.97e-19!49;UBERON:0003080!2.35e-17!40;UBERON:0002780!8.90e-17!39;UBERON:0001890!8.90e-17!39;UBERON:0006240!8.90e-17!39;UBERON:0002791!4.39e-16!29;UBERON:0003528!4.39e-16!29;UBERON:0001893!4.39e-16!29;UBERON:0007811!1.20e-10!86;UBERON:0000956!2.43e-10!21;UBERON:0001869!2.43e-10!21;UBERON:0000203!2.43e-10!21;UBERON:0000153!2.86e-10!94;UBERON:0002619!1.60e-08!17;UBERON:0002021!7.42e-08!10;UBERON:0000411!7.42e-08!10;UBERON:0001950!7.42e-08!10;UBERON:0002420!3.29e-07!8;UBERON:0007245!3.29e-07!8;UBERON:0010009!3.29e-07!8;UBERON:0010011!3.29e-07!8;UBERON:0000454!3.29e-07!8;UBERON:0000025!4.12e-07!114;UBERON:0004111!4.42e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.35e-42,54;UBERON:0001017,1.07e-41,73;UBERON:0001016,3.20e-40,75;UBERON:0002020,1.38e-39,34;UBERON:0001049,4.85e-37,52;UBERON:0005068,4.85e-37,52;UBERON:0006241,4.85e-37,52;UBERON:0007135,4.85e-37,52;UBERON:0003528,5.24e-32,29;UBERON:0002791,5.24e-32,29;UBERON:0001893,5.24e-32,29;UBERON:0004121,6.37e-32,95;UBERON:0000924,6.37e-32,95;UBERON:0006601,6.37e-32,95;UBERON:0002346,2.18e-31,64;UBERON:0003075,2.18e-31,64;UBERON:0007284,2.18e-31,64;UBERON:0002616,8.85e-31,46;UBERON:0000955,6.62e-30,47;UBERON:0006238,6.62e-30,47;UBERON:0003080,1.97e-28,40;UBERON:0010371,1.55e-27,73;UBERON:0002780,2.57e-27,39;UBERON:0001890,2.57e-27,39;UBERON:0006240,2.57e-27,39;UBERON:0003056,6.48e-25,49;UBERON:0010314,9.84e-22,92;UBERON:0000956,2.03e-20,21;UBERON:0001869,2.03e-20,21;UBERON:0000203,2.03e-20,21;UBERON:0002619,8.56e-17,17;UBERON:0002021,4.58e-14,10;UBERON:0000411,4.58e-14,10;UBERON:0001950,4.58e-14,10;UBERON:0002420,8.72e-13,8;UBERON:0007245,8.72e-13,8;UBERON:0010009,8.72e-13,8;UBERON:0010011,8.72e-13,8;UBERON:0000454,8.72e-13,8;UBERON:0000025,1.21e-11,114;UBERON:0004111,6.33e-11,122;UBERON:0003076,1.08e-08,12;UBERON:0003057,1.08e-08,12;UBERON:0001948,1.39e-08,5;UBERON:0002315,1.39e-08,5;UBERON:0000369,1.50e-08,5;UBERON:0002435,1.50e-08,5;UBERON:0000204,1.50e-08,5;UBERON:0010082,1.50e-08,5;UBERON:0011216,2.04e-07,194;UBERON:0002240,4.94e-07,6;UBERON:0005174,4.94e-07,6;UBERON:0001137,4.94e-07,6;UBERON:0002950,8.00e-07,4;UBERON:0001891,8.00e-07,4;UBERON:0009616,8.00e-07,4;UBERON:0010286,8.00e-07,4|phase1_expression=1.44133962394315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.3065571995415,13.2247744818008,7.60597684207415,0,0,0,0,0,0,0.768436610643109,1.45165457231869,1.08004750665353,1.26194976810829,4.57041575046086,4.19650227808066,1.5923803897944,2.20444583341944,2.75765635983006,8.8092704799511,4.59674417106676,7.68032666281217,10.9465618816061,14.9124859071928,17.1901412283731,7.53794097303729,5.6276261003168,5.04234217663473,10.0173719061047,7.26095572075425,5.77838282058432,0.227178579999552,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,1.21439728736295,0,0,0.301445281105245,0.23517741427141,0,0,0,0,0,0,0,0,1.17112318804619,1.25668024088073,0,0,0,0,1.64769703345305,1.83000241127451,2.38743269014442,1.21677024134594,2.04572365864264,1.24672826735736,5.353961681236,0.101839363850316,0,0,0,0.520481771850815,1.14951052216736,0.900310649026746,4.82255417074288,0.95251098811859,0.768682321709099,0.468508622798644,0.258703370739016,0,0.189106080167819,0.351902248327898,0.219195732427575,0,0.348252166522167,0.411564272815887,0.199034266818493,0,0,0,0.207125772535502,0.703578179943289,1.62055855314913,0,0.393528463494808,0.308534225774757,0.4650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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14432 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P06837 | |||
|association_with_transcript=-45bp_to_ENSMUST00000102817,NM_008083,uc007zfv.1_5end | |||
|cluster_id=chr16:42340809..42340836,- | |||
|description=CAGE_peak_3_at_Gap43_5end | |||
|id=chr16:42340809..42340836,- | |||
|ontology_enrichment_celltype=CL:0000540!5.90e-20!33;CL:0000047!5.90e-20!33;CL:0000031!5.90e-20!33;CL:0000404!5.90e-20!33;CL:0000117!2.42e-17!23;CL:0000337!2.42e-17!23;CL:0000393!2.62e-14!39;CL:0000211!2.62e-14!39;CL:0002319!9.64e-14!43;CL:0000221!1.31e-13!44;CL:0000133!1.31e-13!44;CL:0000055!1.27e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.88e-33,23;CL:0000337,5.88e-33,23;CL:0000540,4.89e-29,33;CL:0000047,4.89e-29,33;CL:0000031,4.89e-29,33;CL:0000404,4.89e-29,33;CL:0000393,2.87e-23,39;CL:0000211,2.87e-23,39;CL:0002319,2.50e-20,43;CL:0000221,1.12e-19,44;CL:0000133,1.12e-19,44;CL:0002321,1.87e-09,70;CL:0002609,1.65e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.90e-28!73;UBERON:0005743!4.90e-28!73;UBERON:0000073!6.76e-28!75;UBERON:0001016!6.76e-28!75;UBERON:0004121!1.06e-25!102;UBERON:0000924!1.06e-25!102;UBERON:0006601!1.06e-25!102;UBERON:0002346!1.49e-22!71;UBERON:0003075!1.49e-22!71;UBERON:0007284!1.49e-22!71;UBERON:0000033!4.30e-22!63;UBERON:0001049!2.11e-21!52;UBERON:0005068!2.11e-21!52;UBERON:0006241!2.11e-21!52;UBERON:0007135!2.11e-21!52;UBERON:0000955!3.59e-20!50;UBERON:0006238!3.59e-20!50;UBERON:0002616!4.67e-20!49;UBERON:0002020!7.64e-20!34;UBERON:0003056!1.97e-19!49;UBERON:0003080!2.35e-17!40;UBERON:0002780!8.90e-17!39;UBERON:0001890!8.90e-17!39;UBERON:0006240!8.90e-17!39;UBERON:0002791!4.39e-16!29;UBERON:0003528!4.39e-16!29;UBERON:0001893!4.39e-16!29;UBERON:0007811!1.20e-10!86;UBERON:0000956!2.43e-10!21;UBERON:0001869!2.43e-10!21;UBERON:0000203!2.43e-10!21;UBERON:0000153!2.86e-10!94;UBERON:0002619!1.60e-08!17;UBERON:0002021!7.42e-08!10;UBERON:0000411!7.42e-08!10;UBERON:0001950!7.42e-08!10;UBERON:0002420!3.29e-07!8;UBERON:0007245!3.29e-07!8;UBERON:0010009!3.29e-07!8;UBERON:0010011!3.29e-07!8;UBERON:0000454!3.29e-07!8;UBERON:0000025!4.12e-07!114;UBERON:0004111!4.42e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.35e-42,54;UBERON:0001017,1.07e-41,73;UBERON:0001016,3.20e-40,75;UBERON:0002020,1.38e-39,34;UBERON:0001049,4.85e-37,52;UBERON:0005068,4.85e-37,52;UBERON:0006241,4.85e-37,52;UBERON:0007135,4.85e-37,52;UBERON:0003528,5.24e-32,29;UBERON:0002791,5.24e-32,29;UBERON:0001893,5.24e-32,29;UBERON:0004121,6.37e-32,95;UBERON:0000924,6.37e-32,95;UBERON:0006601,6.37e-32,95;UBERON:0002346,2.18e-31,64;UBERON:0003075,2.18e-31,64;UBERON:0007284,2.18e-31,64;UBERON:0002616,8.85e-31,46;UBERON:0000955,6.62e-30,47;UBERON:0006238,6.62e-30,47;UBERON:0003080,1.97e-28,40;UBERON:0010371,1.55e-27,73;UBERON:0002780,2.57e-27,39;UBERON:0001890,2.57e-27,39;UBERON:0006240,2.57e-27,39;UBERON:0003056,6.48e-25,49;UBERON:0010314,9.84e-22,92;UBERON:0000956,2.03e-20,21;UBERON:0001869,2.03e-20,21;UBERON:0000203,2.03e-20,21;UBERON:0002619,8.56e-17,17;UBERON:0002021,4.58e-14,10;UBERON:0000411,4.58e-14,10;UBERON:0001950,4.58e-14,10;UBERON:0002420,8.72e-13,8;UBERON:0007245,8.72e-13,8;UBERON:0010009,8.72e-13,8;UBERON:0010011,8.72e-13,8;UBERON:0000454,8.72e-13,8;UBERON:0000025,1.21e-11,114;UBERON:0004111,6.33e-11,122;UBERON:0003076,1.08e-08,12;UBERON:0003057,1.08e-08,12;UBERON:0001948,1.39e-08,5;UBERON:0002315,1.39e-08,5;UBERON:0000369,1.50e-08,5;UBERON:0002435,1.50e-08,5;UBERON:0000204,1.50e-08,5;UBERON:0010082,1.50e-08,5;UBERON:0011216,2.04e-07,194;UBERON:0002240,4.94e-07,6;UBERON:0005174,4.94e-07,6;UBERON:0001137,4.94e-07,6;UBERON:0002950,8.00e-07,4;UBERON:0001891,8.00e-07,4;UBERON:0009616,8.00e-07,4;UBERON:0010286,8.00e-07,4 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.3065571995415,13.2247744818008,7.60597684207415,0,0,0,0,0,0,0.768436610643109,1.45165457231869,1.08004750665353,1.26194976810829,4.57041575046086,4.19650227808066,1.5923803897944,2.20444583341944,2.75765635983006,8.8092704799511,4.59674417106676,7.68032666281217,10.9465618816061,14.9124859071928,17.1901412283731,7.53794097303729,5.6276261003168,5.04234217663473,10.0173719061047,7.26095572075425,5.77838282058432,0.227178579999552,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,1.21439728736295,0,0,0.301445281105245,0.23517741427141,0,0,0,0,0,0,0,0,1.17112318804619,1.25668024088073,0,0,0,0,1.64769703345305,1.83000241127451,2.38743269014442,1.21677024134594,2.04572365864264,1.24672826735736,5.353961681236,0.101839363850316,0,0,0,0.520481771850815,1.14951052216736,0.900310649026746,4.82255417074288,0.95251098811859,0.768682321709099,0.468508622798644,0.258703370739016,0,0.189106080167819,0.351902248327898,0.219195732427575,0,0.348252166522167,0.411564272815887,0.199034266818493,0,0,0,0.207125772535502,0.703578179943289,1.62055855314913,0,0.393528463494808,0.308534225774757,0.465067889500816,0,0.233530684734339,0,0.164167464079095,0.0810688095458557,0,0,0,1.26173969138476,2.88132914661996,0,0,0,0.464473343720877,0.257734922644187,0.605050573870028,0,0,0,0,0.251335208800269,0.795825888164603,0.974820435595601,0,0,0.199141273254367,0,0.685491075658373,0,0.407302655690628,0.387904974335251,0,0,0,0,0,0,0.166845105716094,0.393117990226406,0,0.202860121388503,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0.848725428875941,0,0,0.238043640886014,0.195133647857799,0.315270288212382,0.44292937929755,0.159454768657487,0.163863314715738,0.690739927463582,0.144649058581512,0,0,0,0,1.44495530989013,2.46144541843627,0,0,0.315508219416257,0.390438744296638,0.430846795465598,0.238968797952552,2.00518806674155,1.69845918473299,0.404810701674894,0.876767573733936,1.58115111178609,0.321321316421807,0,0.178065603667255,0.162886959353576,0,0,0.485561272309963,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0.540183282093931,1.03486947026204,0,0.177340233642274,0.713475270408282,0.493647061806363,0.913394847343798,0.23467170806371,0,0.220528398054962,0.16488625294148,0.161464426695906,0.120625849856312,0,0.164140899745061,0.582961673259701,0.18542530201051,0,0.206386867963223,0,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.648032044930808,0.209088296014469,0,0.539457385539283,0.247960367176008,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0.205421914329655,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0.226730383615211,0,0,0,0.386379188064381,0,0,0,0,5.0827665835536,9.20650473014354,4.58316410751517,2.40594455281163,1.37016503954128,3.0215755895588,2.70009000092722,3.15224842256954,3.17199686288943,4.14208249401456,1.14166082342594,0.399024873401031,1.36586884603307,0.729320151204882,0.628839487883947,0,0.222246727801615,0.618105171716683,0.320919209591815,0.505394423527595,0.25347929989024,0.754505365544305,0.468207537349412,0.768301828858431,0.34461281373368,0,0.811190281613988,0,0.412085900803307,1.17759136107518,0,1.06485483695602,1.66905332963125,1.45346416632329,0.752875043322645,0.507687647350059,0.365855945745545,1.57841826862706,1.22223702461276,0,0.830445126869219,0.886540341380071,0.409231043169689,0.619747364743864,1.15743966588685,0.499621155875892,0.935726433781634,1.71896843238639,0.191288332068843,0.220591419119515,0 | |||
|short_description=p3@Gap43 | |||
}} |
Revision as of 10:42, 6 August 2015
Short description: | p3@Gap43 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gap43_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -45bp_to_ENSMUST00000102817, NM_008083, uc007zfv.1_5end |
EntrezGene: | 14432 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.88e-33 | 23 |
neuroblast (sensu Vertebrata) | 5.88e-33 | 23 |
neuron | 4.89e-29 | 33 |
neuronal stem cell | 4.89e-29 | 33 |
neuroblast | 4.89e-29 | 33 |
electrically signaling cell | 4.89e-29 | 33 |
electrically responsive cell | 2.87e-23 | 39 |
electrically active cell | 2.87e-23 | 39 |
neural cell | 2.50e-20 | 43 |
ectodermal cell | 1.12e-19 | 44 |
neurectodermal cell | 1.12e-19 | 44 |
embryonic cell | 1.87e-09 | 70 |
neuron of cerebral cortex | 1.65e-07 | 6 |