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MCL coexpression mm9:443

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:77744374..77744436,+p1@Sez6
Mm9::chr11:77767010..77767025,+p3@Sez6
Mm9::chr11:77767192..77767206,-p@chr11:77767192..77767206
-
Mm9::chr11:77791251..77791259,+p@chr11:77791251..77791259
+
Mm9::chr15:25682953..25682967,+p5@Myo10
Mm9::chr3:34549144..34549155,+p5@Sox2
Mm9::chr3:88018396..88018413,+p1@Mir3093
Mm9::chr5:30431717..30431759,+p1@Fam59b
Mm9::chr6:134837801..134837884,-p2@Gpr19
Mm9::chr7:86644020..86644037,+p@chr7:86644020..86644037
+
Mm9::chr7:86644904..86644921,+p1@AI854517
Mm9::chr7:86644931..86644952,+p2@AI854517
Mm9::chr7:86649827..86649840,+p1@Mir9-3
Mm9::chr7:86681027..86681052,+p@chr7:86681027..86681052
+
Mm9::chr8:12395874..12395885,+p2@Sox1
Mm9::chr8:12395892..12395919,+p4@Sox1
Mm9::chr8:88224895..88224924,+p@chr8:88224895..88224924
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
nervous system5.36e-4275
central nervous system1.89e-4173
regional part of nervous system1.04e-4054
neural tube6.66e-3952
neural rod6.66e-3952
future spinal cord6.66e-3952
neural keel6.66e-3952
neurectoderm3.58e-3664
neural plate3.58e-3664
presumptive neural plate3.58e-3664
ectoderm-derived structure3.49e-3595
ectoderm3.49e-3595
presumptive ectoderm3.49e-3595
brain4.64e-3447
future brain4.64e-3447
regional part of brain5.69e-3346
gray matter1.80e-2934
ecto-epithelium4.40e-2973
pre-chordal neural plate3.25e-2849
anterior neural tube3.59e-2840
regional part of forebrain1.94e-2739
forebrain1.94e-2739
future forebrain1.94e-2739
brain grey matter1.20e-2429
regional part of telencephalon1.20e-2429
telencephalon1.20e-2429
structure with developmental contribution from neural crest7.43e-1992
cerebral cortex6.50e-1821
cerebral hemisphere6.50e-1821
pallium6.50e-1821
regional part of cerebral cortex5.82e-1417
posterior neural tube1.09e-1012
chordal neural plate1.09e-1012
occipital lobe3.27e-0810
visual cortex3.27e-0810
neocortex3.27e-0810
tube4.76e-08114
basal ganglion8.15e-088
nuclear complex of neuraxis8.15e-088
aggregate regional part of brain8.15e-088
collection of basal ganglia8.15e-088
cerebral subcortex8.15e-088
Ammon's horn3.22e-077
lobe parts of cerebral cortex3.22e-077
hippocampal formation3.22e-077
limbic system3.22e-077
limbic lobe3.22e-077


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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