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MCL coexpression mm9:742

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Phase1 CAGE Peaks

 Short description
Mm9::chr1:136605836..136605866,+p2@Syt2
Mm9::chr1:136605870..136605895,+p4@Syt2
Mm9::chr1:136605938..136605946,+p8@Syt2
Mm9::chr2:25174713..25174724,-p2@Grin1
Mm9::chr6:115201825..115201836,-p6@Timp4
Mm9::chr6:115201857..115201885,-p1@Timp4
Mm9::chr6:39369941..39369957,-p6@Mkrn1
Mm9::chr7:134164719..134164730,-p6@Prrt2
Mm9::chr8:24085395..24085404,+p18@Ank1
Mm9::chr8:74031641..74031665,-p@chr8:74031641..74031665
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)2.16e-1623
neuroblast (sensu Vertebrata)2.16e-1623
neuron2.93e-0933
neuronal stem cell2.93e-0933
neuroblast2.93e-0933
electrically signaling cell2.93e-0933
ectodermal cell3.14e-0744
neurectodermal cell3.14e-0744
neural cell6.30e-0743
electrically responsive cell7.55e-0739
electrically active cell7.55e-0739

Uber Anatomy
Ontology termp-valuen
regional part of nervous system1.11e-2654
neural tube1.25e-2452
neural rod1.25e-2452
future spinal cord1.25e-2452
neural keel1.25e-2452
central nervous system3.44e-2373
nervous system4.60e-2375
neurectoderm7.00e-2364
neural plate7.00e-2364
presumptive neural plate7.00e-2364
gray matter3.16e-2234
ectoderm-derived structure7.23e-2095
ectoderm7.23e-2095
presumptive ectoderm7.23e-2095
brain3.34e-1947
future brain3.34e-1947
ecto-epithelium5.26e-1973
regional part of brain1.91e-1846
brain grey matter7.46e-1729
regional part of telencephalon7.46e-1729
telencephalon7.46e-1729
pre-chordal neural plate3.82e-1649
anterior neural tube7.30e-1640
regional part of forebrain6.10e-1539
forebrain6.10e-1539
future forebrain6.10e-1539
structure with developmental contribution from neural crest2.68e-1392
cerebral cortex1.86e-1021
cerebral hemisphere1.86e-1021
pallium1.86e-1021
occipital lobe2.50e-1010
visual cortex2.50e-1010
neocortex2.50e-1010
posterior neural tube9.26e-1012
chordal neural plate9.26e-1012
regional part of cerebral cortex1.32e-0917
spinal cord4.46e-086
dorsal region element4.46e-086
dorsum4.46e-086
basal ganglion5.70e-088
nuclear complex of neuraxis5.70e-088
aggregate regional part of brain5.70e-088
collection of basal ganglia5.70e-088
cerebral subcortex5.70e-088
regional part of spinal cord5.47e-075
gray matter of spinal cord5.47e-075


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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