FFCP PHASE1:Hg19::chr14:60337436..60337454,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6252 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10467 | |||
|TSSclassifier=S | |||
|UniProt=Q2NKQ5 | |||
|association_with_transcript=15bp_to_ENST00000433623_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_5_at_RTN1_5end | |||
|id=chr14:60337436..60337454,- | |||
|ontology_enrichment_celltype=CL:0002009!1.46e-19!65;CL:0002057!1.63e-19!42;CL:0002194!4.71e-18!63;CL:0000576!4.71e-18!63;CL:0000040!4.71e-18!63;CL:0000559!4.71e-18!63;CL:0000860!2.63e-17!45;CL:0000766!1.26e-16!76;CL:0000557!1.74e-16!71;CL:0000839!1.13e-14!70;CL:0000763!3.65e-14!112;CL:0000049!3.65e-14!112;CL:0000738!9.39e-09!140;CL:0002393!3.54e-08!9;CL:0002397!3.54e-08!9;CL:0000037!1.32e-07!172;CL:0000566!1.32e-07!172;CL:0002087!2.41e-07!119;CL:0000988!3.72e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0002393;4.10e-10;6!CL:0002397;4.10e-10;6!CL:0000473;7.30e-08;39!CL:0000234;7.30e-08;39!CL:0000576;7.10e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,6.56e-16,48;CL:0000234,6.56e-16,48;CL:0002009,2.31e-14,61;CL:0000860,5.51e-13,42;CL:0002057,5.51e-13,42;CL:0000557,2.06e-12,67;CL:0002194,2.14e-12,59;CL:0000576,2.14e-12,59;CL:0000040,2.14e-12,59;CL:0000559,2.14e-12,59;CL:0002393,3.41e-11,9;CL:0002397,3.41e-11,9;CL:0000766,7.08e-11,72;CL:0000839,2.23e-10,66;CL:0000763,1.09e-09,108;CL:0000049,1.09e-09,108 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.34e-12;82!CL:0002057;3.10e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.65e-45!57;UBERON:0005068!1.65e-45!57;UBERON:0006241!1.65e-45!57;UBERON:0007135!1.65e-45!57;UBERON:0007023!5.76e-45!115;UBERON:0001017!1.24e-42!82;UBERON:0005743!1.20e-40!86;UBERON:0002616!1.93e-40!59;UBERON:0000955!5.11e-39!69;UBERON:0006238!5.11e-39!69;UBERON:0000073!1.71e-38!94;UBERON:0001016!1.71e-38!94;UBERON:0003080!1.32e-34!42;UBERON:0002780!6.11e-34!41;UBERON:0001890!6.11e-34!41;UBERON:0006240!6.11e-34!41;UBERON:0001893!1.12e-30!34;UBERON:0002020!1.45e-30!34;UBERON:0003528!1.45e-30!34;UBERON:0002791!1.30e-29!33;UBERON:0001869!6.22e-29!32;UBERON:0003075!1.49e-28!86;UBERON:0007284!1.49e-28!86;UBERON:0002346!3.32e-26!90;UBERON:0000956!3.38e-22!25;UBERON:0000203!3.38e-22!25;UBERON:0002619!2.04e-21!22;UBERON:0003056!2.15e-21!61;UBERON:0001950!1.59e-19!20;UBERON:0000033!4.78e-19!123;UBERON:0000153!7.50e-19!129;UBERON:0007811!7.50e-19!129;UBERON:0002390!1.12e-18!102;UBERON:0003061!1.12e-18!102;UBERON:0002193!3.02e-17!112;UBERON:0004121!5.35e-16!169;UBERON:0000924!5.11e-15!173;UBERON:0006601!5.11e-15!173;UBERON:0002371!1.68e-13!80;UBERON:0001474!1.19e-12!86;UBERON:0003076!9.78e-12!15;UBERON:0003057!9.78e-12!15;UBERON:0002420!6.08e-10!9;UBERON:0007245!6.08e-10!9;UBERON:0010009!6.08e-10!9;UBERON:0010011!6.08e-10!9;UBERON:0000454!6.08e-10!9;UBERON:0002308!8.73e-10!9;UBERON:0000125!8.73e-10!9;UBERON:0004765!8.88e-10!101;UBERON:0001434!8.88e-10!101;UBERON:0004733!1.54e-09!12;UBERON:0002028!1.54e-09!12;UBERON:0007277!1.54e-09!12;UBERON:0002050!1.96e-09!605;UBERON:0005423!1.96e-09!605;UBERON:0000922!2.29e-09!612;UBERON:0000923!3.53e-09!604;UBERON:0005291!3.53e-09!604;UBERON:0006598!3.53e-09!604;UBERON:0002532!3.53e-09!604;UBERON:0004732!1.68e-08!13;UBERON:0002405!1.91e-08!115;UBERON:0002298!3.78e-08!8;UBERON:0009663!5.36e-08!7;UBERON:0000200!1.30e-07!6;UBERON:0000467!2.06e-07!625;UBERON:0000025!2.10e-07!194;UBERON:0000062!2.55e-07!511;UBERON:0000480!2.55e-07!626;UBERON:0000479!3.84e-07!787;UBERON:0002680!4.57e-07!9;UBERON:0001895!4.57e-07!9;UBERON:0010092!4.57e-07!9;UBERON:0001871!4.86e-07!7;UBERON:0000468!6.68e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.51e-41;34!UBERON:0003528;5.82e-41;34!UBERON:0002020;5.82e-41;34!UBERON:0001869;1.22e-40;32!UBERON:0002791;2.10e-40;32!UBERON:0002619;9.53e-39;22!UBERON:0002780;3.67e-38;41!UBERON:0001890;3.67e-38;41!UBERON:0000073;4.47e-36;53!UBERON:0002616;4.47e-36;53!UBERON:0001950;2.91e-35;20!UBERON:0000956;2.17e-33;25!UBERON:0000203;2.17e-33;25!UBERON:0001017;3.93e-25;75!UBERON:0000955;6.20e-24;68!UBERON:0001016;4.36e-21;83!UBERON:0002420;4.64e-17;9!UBERON:0007245;4.64e-17;9!UBERON:0010009;4.64e-17;9!UBERON:0010011;4.64e-17;9!UBERON:0000454;4.64e-17;9!UBERON:0000125;8.89e-17;9!UBERON:0002308;8.89e-17;9!UBERON:0009663;1.76e-13;7!UBERON:0000200;1.03e-12;6!UBERON:0007023;3.03e-12;114!UBERON:0002298;5.92e-11;6!UBERON:0004733;8.92e-11;12!UBERON:0002028;8.92e-11;12!UBERON:0000349;1.66e-10;5!UBERON:0001872;1.87e-10;5!UBERON:0001871;1.98e-10;6!UBERON:0002021;2.49e-10;5!UBERON:0004732;8.55e-10;13!UBERON:0000178;3.76e-09;15!UBERON:0000179;3.76e-09;15!UBERON:0000463;3.76e-09;15!UBERON:0000369;8.39e-09;4!UBERON:0002435;8.39e-09;4!UBERON:0000204;8.39e-09;4!UBERON:0011216;9.31e-09;132!UBERON:0001870;3.09e-07;3!UBERON:0005383;5.78e-07;3!UBERON:0005382;5.78e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.93e-67,56;UBERON:0005068,3.93e-67,56;UBERON:0006241,3.93e-67,56;UBERON:0007135,3.93e-67,56;UBERON:0000073,8.80e-63,53;UBERON:0002616,8.80e-63,53;UBERON:0001017,3.79e-59,81;UBERON:0001016,1.89e-53,89;UBERON:0002780,4.17e-53,41;UBERON:0001890,4.17e-53,41;UBERON:0003080,4.17e-53,41;UBERON:0006240,4.17e-53,41;UBERON:0000955,1.37e-52,68;UBERON:0006238,1.37e-52,68;UBERON:0001893,7.22e-49,34;UBERON:0003528,1.14e-48,34;UBERON:0002020,1.14e-48,34;UBERON:0001869,1.16e-45,32;UBERON:0002791,2.76e-45,32;UBERON:0003075,4.34e-41,82;UBERON:0007284,4.34e-41,82;UBERON:0007023,5.83e-39,114;UBERON:0002619,9.17e-39,22;UBERON:0002346,1.77e-38,86;UBERON:0001950,2.95e-35,20;UBERON:0000956,2.10e-33,25;UBERON:0000203,2.10e-33,25;UBERON:0003056,5.46e-32,61;UBERON:0010371,3.04e-29,104;UBERON:0004121,6.47e-22,171;UBERON:0000924,6.47e-22,171;UBERON:0006601,6.47e-22,171;UBERON:0010314,3.23e-21,132;UBERON:0002420,5.45e-17,9;UBERON:0007245,5.45e-17,9;UBERON:0010009,5.45e-17,9;UBERON:0010011,5.45e-17,9;UBERON:0000454,5.45e-17,9;UBERON:0011216,8.26e-17,223;UBERON:0000125,1.06e-16,9;UBERON:0002308,1.06e-16,9;UBERON:0003076,9.84e-15,15;UBERON:0003057,9.84e-15,15;UBERON:0002390,1.84e-14,98;UBERON:0003061,1.84e-14,98;UBERON:0009663,2.06e-13,7;UBERON:0000200,1.05e-12,6;UBERON:0002193,3.36e-12,108;UBERON:0000025,1.53e-11,192;UBERON:0000923,4.47e-11,560;UBERON:0010316,4.47e-11,560;UBERON:0005291,4.47e-11,560;UBERON:0006598,4.47e-11,560;UBERON:0010317,4.47e-11,560;UBERON:0002532,4.47e-11,560;UBERON:0002298,4.64e-11,6;UBERON:0004733,7.25e-11,12;UBERON:0002028,7.25e-11,12;UBERON:0007277,7.25e-11,12;UBERON:0002050,8.16e-11,564;UBERON:0000349,1.56e-10,5;UBERON:0001871,2.03e-10,6;UBERON:0001872,2.03e-10,5;UBERON:0002021,2.19e-10,5;UBERON:0002371,4.31e-10,76;UBERON:0004732,7.08e-10,13;UBERON:0005423,9.59e-10,581;UBERON:0000178,3.14e-09,15;UBERON:0000179,3.14e-09,15;UBERON:0000463,3.14e-09,15;UBERON:0000922,4.36e-09,592;UBERON:0001474,7.58e-09,82;UBERON:0000369,8.59e-09,4;UBERON:0002435,8.59e-09,4;UBERON:0000204,8.59e-09,4;UBERON:0010082,8.59e-09,4;UBERON:0004111,1.17e-07,240;UBERON:0004765,1.82e-07,90;UBERON:0001870,3.13e-07,3;UBERON:0002405,5.11e-07,93;UBERON:0005383,5.97e-07,3;UBERON:0005382,5.97e-07,3;UBERON:0001434,8.27e-07,100;UBERON:0002680,9.43e-07,9;UBERON:0001895,9.43e-07,9;UBERON:0010092,9.43e-07,9 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0.85870796139317,0.136874425072884,0.251085279189606,0,0,0,2.36018566109342,0.383829398097213,2.47705797305722,0,0,0,0,0,0.293600439334847,2.21598163412751,3.20871115952227,1.73608696572681,0.223915474239924,0,0.515151135268373,1.30858414901608,0.755751887377619,0.727752183563449,0.464858073811369,1.6446715520873,0,0.28769239232215,0.512321413058201,0.709446689665756,1.72372840368309,1.29096936716765,1.35426486594342,0.941211697713023,0,0,1.53041946185451,0,1.27867425159808,0,0.598390972864896,1.27867425159808,0.870627715885752,2.26954089876456,1.86846674698672,0.251248665256743,0.521482918420201,0.868755378820466,0.605399502633369,1.47311054395026,0.632924774881769,2.95757400836718,2.33864729961548,3.98351426465914,6.29040334420373,2.25265339262259,3.37523732063868,0.855038231223746,1.9891667719909,2.00930569141097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,1.24930726552346,0.473554504088034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57174890597255,0,0,0.97364218096405,0,1.32957960518865,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.302714855289863,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0.246217006087397,3.04205544681009,2.97262324577457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646358578788889,0,0,0,0,0,0,0,0,1.08524321078289,0,0,0,0.791951872933429,0,0,0,1.2162378064119,1.50677127429638,0,0,0,0,0,0,0,0,0.394061520403854,0.215627574859517,0.641715181398742,2.54094624222463,3.90419561572865,1.54657762555539,2.17771144934653,0,0.749007023947182,0,0.414415513436035,0,0,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0,0,0,2.68798433959754,3.45142721309787,1.70764092485511,0,0,0,0,0,0,0,0.511707249066704,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.412164046590889,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405820753925408,0.6196469961995,0,0.143411352204052,0.392996164052485,0.7133421029625,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,2.02979043692868,0,1.70894156152249,1.42939065274673,2.46817363851717,1.29694662238543,2.70015718619057,2.37937552888281,0,0.962479855263359,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0,2.50634477090067,0,0,0,0,0.687010689511529,0,0,0,0,1.67043704337145,0,1.08182271390393,0,1.4098700508785,0,0.586032717087576,0,0,0,0,0,0,11.9297717731956,9.28418148309384,0,0,0,0.796991953004279,0.828851746593443,0.755798243562828,0,0,0,0,0,0,0.0986434056369336,0,0,15.5093239375235,13.4513742334684,3.99227596002388,0,0.962059999958153,1.44999915086959,0,0,0,0,0,0.173624994933292,5.31444831488303,10.2506972831597,3.05163472634166,2.32216445855572,1.77328571372128,10.0917282690827,0,0,0.153900517007594,0.113942055847001,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0.794682894901893,0.210998064528027,0,0,0.216388639742091,0,0.0884575645033392,0,0,0.370691816839509,0.104421949505455,3.70706231393724,0,5.3880822516828,0,0,0,0,0,4.28501866282686,0.884612114798832,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.451961481561065,0.274083849293502,0,14.6881046617639,0,0,1.28071796843612,0,0,0,0.857974989309823,0,0,0,0.135904206073614,0.104602846312333,0,0,3.60252173225874,3.28572909340783,0,0,0,0,0.229160424011684,0,0,0,0,0.134366944973453,0.360299883542404,0,0,0,0,0,0,7.95229689809303,5.72054305668618,0,0,0,4.49947783103001,5.41661368190565,15.3696378344802,0,0,0,0,3.40645944732405,0,0,0,0,0,0,0,0,3.20160830922422,0,0,0,0,4.00777164720807,4.49590845925146,0,0,0.854299300541557,0.78602152549833,2.48543433208317,0.496166021811951,0,0,0,0.544017803369474,0.2506898940227,0,0.327872630709804,0,18.6074317793067,11.5924951656865,9.51451073369399,2.29363678276028,4.32623300993724,3.91207338530716,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.30924491143255,0,0,0,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,7.46595555219346,0.194860308839388,0.132864840313363,0.327130788511688,0,0,0,0,0,0,0,0,0,1.24415452006595,0.639471856518258,1.1860729253635,0,0.109209638192014,0,0,0,0,0,0,0.80057074828547,0,0,12.9100742443884,8.5017945795351,7.66242523474326,15.5888436822974,2.52071696221718,15.3529100470564,13.5639542330755,0,0,0,0,0,0,0,0.397832444232549,0.451261970095544,0,0.781514011233092,0,0.163771917510097,0,16.8843961545987,7.02970288752463,8.26747186004736,14.8392995853742,3.28184885410932,0,0.496211178389294,0,0,0,0.672567444437648,1.82089681270989,2.27662191351298,0.354809480650555,0,0,2.9906682509806,14.7331012780782,0,0,0.15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| |||
|short_description=p5@RTN1 | |||
}} |
Revision as of 04:57, 11 September 2013
Short description: | p5@RTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_RTN1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 15bp_to_ENST00000433623_5end |
EntrezGene: | RTN1 |
HGNC: | 10467 |
UniProt: | Q2NKQ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 6.56e-16 | 48 |
phagocyte | 6.56e-16 | 48 |
macrophage dendritic cell progenitor | 2.31e-14 | 61 |
classical monocyte | 5.51e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.51e-13 | 42 |
granulocyte monocyte progenitor cell | 2.06e-12 | 67 |
monopoietic cell | 2.14e-12 | 59 |
monocyte | 2.14e-12 | 59 |
monoblast | 2.14e-12 | 59 |
promonocyte | 2.14e-12 | 59 |
intermediate monocyte | 3.41e-11 | 9 |
CD14-positive, CD16-positive monocyte | 3.41e-11 | 9 |
myeloid leukocyte | 7.08e-11 | 72 |
myeloid lineage restricted progenitor cell | 2.23e-10 | 66 |
myeloid cell | 1.09e-09 | 108 |
common myeloid progenitor | 1.09e-09 | 108 |
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