FFCP PHASE1:Hg19::chr2:202563379..202563412,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:202563379..202563412,- to FFCP PHASE1:Hg19::chr2:202563379..202563412,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=58538 | |EntrezGene=58538 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13680 | |HGNC=13680 | ||
|TSSclassifier=strong | |||
|UniProt=F8WBH8 | |UniProt=F8WBH8 | ||
|association_with_transcript=0bp_to_ENST00000409818,ENST00000486212_5end | |||
|cluster_id=chr2:202563379..202563412,- | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_3_at_MPP4_5end | |||
|id=chr2:202563379..202563412,- | |||
|ontology_enrichment_celltype=CL:0000222!8.29e-26!119;CL:0000359!3.13e-23!32;CL:0000055!2.60e-21!180;CL:0000680!4.60e-21!57;CL:0000056!4.60e-21!57;CL:0000355!4.60e-21!57;CL:0000192!4.78e-19!42;CL:0000514!4.78e-19!42;CL:0000187!1.23e-18!54;CL:0000183!2.88e-17!59;CL:0000393!1.53e-15!60;CL:0000211!1.53e-15!60;CL:0002139!3.59e-13!24;CL:0000115!8.51e-13!35;CL:0000220!1.35e-12!246;CL:0002321!2.67e-12!248;CL:0002539!3.12e-12!10;CL:0002371!3.89e-12!591;CL:0000048!5.99e-11!430;CL:0000144!7.79e-11!625;CL:0000723!2.44e-10!436;CL:0000034!1.46e-09!444;CL:0000548!3.34e-09!679;CL:0000004!3.34e-09!679;CL:0000255!3.34e-09!679;CL:0000012!5.96e-09!682;CL:0002078!1.16e-08!44;CL:0000213!1.61e-08!57;CL:0000215!1.61e-08!57;CL:0000071!2.09e-08!18;CL:0002546!2.09e-08!18;CL:1000413!2.65e-08!9;CL:0000057!5.33e-08!75;CL:0005020!9.16e-07!6;CL:0002138!9.16e-07!6;CL:0005022!9.16e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.37e-19;32!CL:1000413;8.52e-15;9!CL:0002539;1.73e-14;10!CL:0000192;2.87e-11;43!CL:0000708;4.63e-10;3!CL:0002139;4.76e-10;24!CL:0000115;7.29e-10;36!CL:0002582;2.08e-09;3!CL:0000071;4.67e-09;18!CL:0002544;5.33e-08;6!CL:0000056;2.72e-07;4!CL:0002589;3.98e-07;2!CL:0002583;6.06e-07;2!CL:0002594;7.04e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.22e-20,32;CL:0000222,1.03e-17,121;CL:1000413,6.18e-15,9;CL:0002539,1.01e-14,10;CL:0000192,5.39e-14,43;CL:0000514,5.39e-14,43;CL:0000680,7.27e-14,58;CL:0000056,7.27e-14,58;CL:0000355,7.27e-14,58;CL:0000187,1.75e-11,55;CL:0000115,2.52e-10,36;CL:0000708,3.11e-10,3;CL:0002139,4.68e-10,24;CL:0000393,6.02e-10,61;CL:0000211,6.02e-10,61;CL:0002582,1.31e-09,3;CL:0000071,4.27e-09,18;CL:0002546,4.27e-09,18;CL:0002544,3.05e-08,6;CL:0002078,1.06e-07,45;CL:0000515,2.11e-07,4;CL:0002321,3.18e-07,250;CL:0002594,5.11e-07,4;CL:0002589,6.57e-07,2;CL:0002583,9.64e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000514;2.87e-11;43!CL:0002546;4.67e-09;18!CL:0000355;8.10e-08;58!CL:0000515;2.72e-07;4 | |||
|ontology_enrichment_disease=DOID:2394!1.31e-12!14;DOID:120!2.17e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.91e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.67e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0000055!2.07e-31!69;UBERON:0002049!1.01e-29!79;UBERON:0007798!1.01e-29!79;UBERON:0001637!4.66e-28!42;UBERON:0003509!4.66e-28!42;UBERON:0004572!4.66e-28!42;UBERON:0001981!4.75e-27!60;UBERON:0007500!4.75e-27!60;UBERON:0004537!4.75e-27!60;UBERON:0006965!4.75e-27!60;UBERON:0004573!2.75e-23!33;UBERON:0004571!2.75e-23!33;UBERON:0004872!3.44e-21!84;UBERON:0000914!3.15e-20!83;UBERON:0002329!3.15e-20!83;UBERON:0003077!3.15e-20!83;UBERON:0003059!3.15e-20!83;UBERON:0007282!3.15e-20!83;UBERON:0009618!3.15e-20!83;UBERON:0007285!3.15e-20!83;UBERON:0004535!3.20e-20!110;UBERON:0001009!3.60e-19!113;UBERON:0004290!6.43e-19!70;UBERON:0001134!8.75e-19!61;UBERON:0002036!8.75e-19!61;UBERON:0003082!8.75e-19!61;UBERON:0002385!9.23e-18!63;UBERON:0001015!9.23e-18!63;UBERON:0000383!9.23e-18!63;UBERON:0000490!3.47e-17!138;UBERON:0003914!8.16e-15!118;UBERON:0000947!4.13e-14!21;UBERON:0010191!4.13e-14!21;UBERON:0000486!4.44e-14!82;UBERON:0004237!3.12e-12!10;UBERON:0004695!3.12e-12!10;UBERON:0002111!3.12e-12!10;UBERON:0004178!3.12e-12!10;UBERON:0005256!1.25e-10!143;UBERON:0001135!4.57e-10!15;UBERON:0000487!1.51e-08!22;UBERON:0001986!2.09e-08!18;UBERON:0004638!2.09e-08!18;UBERON:0004852!2.09e-08!18;UBERON:0003915!2.65e-08!9;UBERON:0004700!2.65e-08!9;UBERON:0001917!2.65e-08!9;UBERON:0006914!5.25e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.61e-22;42!UBERON:0003509;1.61e-22;42!UBERON:0004572;1.61e-22;42!UBERON:0004573;1.89e-22;33!UBERON:0004571;1.89e-22;33!UBERON:0007500;1.32e-18;56!UBERON:0001981;1.32e-18;56!UBERON:0004537;1.32e-18;56!UBERON:0000947;2.42e-18;21!UBERON:0010191;2.42e-18;21!UBERON:0003915;8.52e-15;9!UBERON:0004700;8.52e-15;9!UBERON:0001917;8.52e-15;9!UBERON:0004237;1.73e-14;10!UBERON:0004695;1.73e-14;10!UBERON:0002111;1.73e-14;10!UBERON:0004178;1.73e-14;10!UBERON:0000055;5.88e-13;65!UBERON:0002049;2.12e-10;75!UBERON:0007798;2.12e-10;75!UBERON:0003210;4.63e-10;3!UBERON:0003914;1.78e-09;74!UBERON:0001135;2.83e-09;15!UBERON:0004638;4.67e-09;18!UBERON:0001986;4.67e-09;18!UBERON:0004852;4.67e-09;18!UBERON:0002385;9.22e-08;31!UBERON:0001015;9.22e-08;31!UBERON:0000383;9.22e-08;31!UBERON:0000992;9.81e-08;13!UBERON:0000487;3.64e-07;22!UBERON:0002119;3.77e-07;4!UBERON:0001529;3.98e-07;2!UBERON:0007204;3.98e-07;2!UBERON:0000490;6.47e-07;33!UBERON:0001310;7.04e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.21e-34,42;UBERON:0003509,1.21e-34,42;UBERON:0004572,1.21e-34,42;UBERON:0007500,3.62e-27,59;UBERON:0001981,3.62e-27,59;UBERON:0004537,3.62e-27,59;UBERON:0006965,3.62e-27,59;UBERON:0000055,1.19e-26,68;UBERON:0004573,2.12e-25,33;UBERON:0004571,2.12e-25,33;UBERON:0002049,2.93e-22,78;UBERON:0007798,2.93e-22,78;UBERON:0004872,8.39e-19,83;UBERON:0000947,1.01e-18,21;UBERON:0010191,1.01e-18,21;UBERON:0004535,4.95e-15,109;UBERON:0003915,6.18e-15,9;UBERON:0004700,6.18e-15,9;UBERON:0001917,6.18e-15,9;UBERON:0004237,1.01e-14,10;UBERON:0004695,1.01e-14,10;UBERON:0002111,1.01e-14,10;UBERON:0004178,1.01e-14,10;UBERON:0001009,1.98e-14,112;UBERON:0003914,1.95e-13,117;UBERON:0001134,1.17e-12,62;UBERON:0002036,1.17e-12,62;UBERON:0003082,1.17e-12,62;UBERON:0007503,1.17e-12,78;UBERON:0002385,4.11e-12,64;UBERON:0001015,4.11e-12,64;UBERON:0000383,4.11e-12,64;UBERON:0000490,4.24e-12,148;UBERON:0002329,9.69e-12,71;UBERON:0003059,9.69e-12,71;UBERON:0007282,9.69e-12,71;UBERON:0004290,9.69e-12,71;UBERON:0009618,9.69e-12,71;UBERON:0003077,1.65e-11,72;UBERON:0007285,1.65e-11,72;UBERON:0007524,2.78e-11,73;UBERON:0003210,3.11e-10,3;UBERON:0001135,2.01e-09,15;UBERON:0000486,2.47e-09,83;UBERON:0004638,4.27e-09,18;UBERON:0001986,4.27e-09,18;UBERON:0004852,4.27e-09,18;UBERON:0000992,7.03e-08,13;UBERON:0000926,3.32e-07,315;UBERON:0004120,3.32e-07,315;UBERON:0006603,3.32e-07,315;UBERON:0000487,3.38e-07,22;UBERON:0002119,3.71e-07,4;UBERON:0001310,5.11e-07,4;UBERON:0005256,5.96e-07,122;UBERON:0001529,6.57e-07,2;UBERON:0007204,6.57e-07,2 | |||
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| ||
|short_description=p3@MPP4 | |||
}} | }} |
Latest revision as of 13:56, 19 September 2015
Short description: | p3@MPP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MPP4_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_ENST00000409818, ENST00000486212_5end |
EntrezGene: | MPP4 |
HGNC: | 13680 |
UniProt: | F8WBH8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.22e-20 | 32 |
mesodermal cell | 1.03e-17 | 121 |
endothelial cell of artery | 6.18e-15 | 9 |
aortic smooth muscle cell | 1.01e-14 | 10 |
smooth muscle cell | 5.39e-14 | 43 |
smooth muscle myoblast | 5.39e-14 | 43 |
muscle precursor cell | 7.27e-14 | 58 |
myoblast | 7.27e-14 | 58 |
multi-potent skeletal muscle stem cell | 7.27e-14 | 58 |
muscle cell | 1.75e-11 | 55 |
endothelial cell | 2.52e-10 | 36 |
leptomeningeal cell | 3.11e-10 | 3 |
endothelial cell of vascular tree | 4.68e-10 | 24 |
electrically responsive cell | 6.02e-10 | 61 |
electrically active cell | 6.02e-10 | 61 |
visceral preadipocyte | 1.31e-09 | 3 |
blood vessel endothelial cell | 4.27e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.27e-09 | 18 |
aortic endothelial cell | 3.05e-08 | 6 |
meso-epithelial cell | 1.06e-07 | 45 |
skeletal muscle myoblast | 2.11e-07 | 4 |
embryonic cell | 3.18e-07 | 250 |
smooth muscle cell of the umbilical artery | 5.11e-07 | 4 |
smooth muscle cell of the brachiocephalic vasculature | 6.57e-07 | 2 |
subcutaneous preadipocyte | 9.64e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.67e-12 | 14 |