FFCP PHASE1:Hg19::chr14:60337436..60337454,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:60337436..60337454,- to FFCP PHASE1:Hg19::chr14:60337436..60337454,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6252 | |EntrezGene=6252 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10467 | |HGNC=10467 | ||
|TSSclassifier=strong | |||
|UniProt=Q2NKQ5 | |UniProt=Q2NKQ5 | ||
|association_with_transcript=15bp_to_ENST00000433623_5end | |||
|cluster_id=chr14:60337436..60337454,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_5_at_RTN1_5end | |||
|id=chr14:60337436..60337454,- | |||
|ontology_enrichment_celltype=CL:0002009!1.46e-19!65;CL:0002057!1.63e-19!42;CL:0002194!4.71e-18!63;CL:0000576!4.71e-18!63;CL:0000040!4.71e-18!63;CL:0000559!4.71e-18!63;CL:0000860!2.63e-17!45;CL:0000766!1.26e-16!76;CL:0000557!1.74e-16!71;CL:0000839!1.13e-14!70;CL:0000763!3.65e-14!112;CL:0000049!3.65e-14!112;CL:0000738!9.39e-09!140;CL:0002393!3.54e-08!9;CL:0002397!3.54e-08!9;CL:0000037!1.32e-07!172;CL:0000566!1.32e-07!172;CL:0002087!2.41e-07!119;CL:0000988!3.72e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0002393;4.10e-10;6!CL:0002397;4.10e-10;6!CL:0000473;7.30e-08;39!CL:0000234;7.30e-08;39!CL:0000576;7.10e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,6.56e-16,48;CL:0000234,6.56e-16,48;CL:0002009,2.31e-14,61;CL:0000860,5.51e-13,42;CL:0002057,5.51e-13,42;CL:0000557,2.06e-12,67;CL:0002194,2.14e-12,59;CL:0000576,2.14e-12,59;CL:0000040,2.14e-12,59;CL:0000559,2.14e-12,59;CL:0002393,3.41e-11,9;CL:0002397,3.41e-11,9;CL:0000766,7.08e-11,72;CL:0000839,2.23e-10,66;CL:0000763,1.09e-09,108;CL:0000049,1.09e-09,108 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.34e-12;82!CL:0002057;3.10e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.65e-45!57;UBERON:0005068!1.65e-45!57;UBERON:0006241!1.65e-45!57;UBERON:0007135!1.65e-45!57;UBERON:0007023!5.76e-45!115;UBERON:0001017!1.24e-42!82;UBERON:0005743!1.20e-40!86;UBERON:0002616!1.93e-40!59;UBERON:0000955!5.11e-39!69;UBERON:0006238!5.11e-39!69;UBERON:0000073!1.71e-38!94;UBERON:0001016!1.71e-38!94;UBERON:0003080!1.32e-34!42;UBERON:0002780!6.11e-34!41;UBERON:0001890!6.11e-34!41;UBERON:0006240!6.11e-34!41;UBERON:0001893!1.12e-30!34;UBERON:0002020!1.45e-30!34;UBERON:0003528!1.45e-30!34;UBERON:0002791!1.30e-29!33;UBERON:0001869!6.22e-29!32;UBERON:0003075!1.49e-28!86;UBERON:0007284!1.49e-28!86;UBERON:0002346!3.32e-26!90;UBERON:0000956!3.38e-22!25;UBERON:0000203!3.38e-22!25;UBERON:0002619!2.04e-21!22;UBERON:0003056!2.15e-21!61;UBERON:0001950!1.59e-19!20;UBERON:0000033!4.78e-19!123;UBERON:0000153!7.50e-19!129;UBERON:0007811!7.50e-19!129;UBERON:0002390!1.12e-18!102;UBERON:0003061!1.12e-18!102;UBERON:0002193!3.02e-17!112;UBERON:0004121!5.35e-16!169;UBERON:0000924!5.11e-15!173;UBERON:0006601!5.11e-15!173;UBERON:0002371!1.68e-13!80;UBERON:0001474!1.19e-12!86;UBERON:0003076!9.78e-12!15;UBERON:0003057!9.78e-12!15;UBERON:0002420!6.08e-10!9;UBERON:0007245!6.08e-10!9;UBERON:0010009!6.08e-10!9;UBERON:0010011!6.08e-10!9;UBERON:0000454!6.08e-10!9;UBERON:0002308!8.73e-10!9;UBERON:0000125!8.73e-10!9;UBERON:0004765!8.88e-10!101;UBERON:0001434!8.88e-10!101;UBERON:0004733!1.54e-09!12;UBERON:0002028!1.54e-09!12;UBERON:0007277!1.54e-09!12;UBERON:0002050!1.96e-09!605;UBERON:0005423!1.96e-09!605;UBERON:0000922!2.29e-09!612;UBERON:0000923!3.53e-09!604;UBERON:0005291!3.53e-09!604;UBERON:0006598!3.53e-09!604;UBERON:0002532!3.53e-09!604;UBERON:0004732!1.68e-08!13;UBERON:0002405!1.91e-08!115;UBERON:0002298!3.78e-08!8;UBERON:0009663!5.36e-08!7;UBERON:0000200!1.30e-07!6;UBERON:0000467!2.06e-07!625;UBERON:0000025!2.10e-07!194;UBERON:0000062!2.55e-07!511;UBERON:0000480!2.55e-07!626;UBERON:0000479!3.84e-07!787;UBERON:0002680!4.57e-07!9;UBERON:0001895!4.57e-07!9;UBERON:0010092!4.57e-07!9;UBERON:0001871!4.86e-07!7;UBERON:0000468!6.68e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.51e-41;34!UBERON:0003528;5.82e-41;34!UBERON:0002020;5.82e-41;34!UBERON:0001869;1.22e-40;32!UBERON:0002791;2.10e-40;32!UBERON:0002619;9.53e-39;22!UBERON:0002780;3.67e-38;41!UBERON:0001890;3.67e-38;41!UBERON:0000073;4.47e-36;53!UBERON:0002616;4.47e-36;53!UBERON:0001950;2.91e-35;20!UBERON:0000956;2.17e-33;25!UBERON:0000203;2.17e-33;25!UBERON:0001017;3.93e-25;75!UBERON:0000955;6.20e-24;68!UBERON:0001016;4.36e-21;83!UBERON:0002420;4.64e-17;9!UBERON:0007245;4.64e-17;9!UBERON:0010009;4.64e-17;9!UBERON:0010011;4.64e-17;9!UBERON:0000454;4.64e-17;9!UBERON:0000125;8.89e-17;9!UBERON:0002308;8.89e-17;9!UBERON:0009663;1.76e-13;7!UBERON:0000200;1.03e-12;6!UBERON:0007023;3.03e-12;114!UBERON:0002298;5.92e-11;6!UBERON:0004733;8.92e-11;12!UBERON:0002028;8.92e-11;12!UBERON:0000349;1.66e-10;5!UBERON:0001872;1.87e-10;5!UBERON:0001871;1.98e-10;6!UBERON:0002021;2.49e-10;5!UBERON:0004732;8.55e-10;13!UBERON:0000178;3.76e-09;15!UBERON:0000179;3.76e-09;15!UBERON:0000463;3.76e-09;15!UBERON:0000369;8.39e-09;4!UBERON:0002435;8.39e-09;4!UBERON:0000204;8.39e-09;4!UBERON:0011216;9.31e-09;132!UBERON:0001870;3.09e-07;3!UBERON:0005383;5.78e-07;3!UBERON:0005382;5.78e-07;3 | |||
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| ||
|short_description=p5@RTN1 | |||
}} | }} |
Latest revision as of 20:10, 24 September 2015
Short description: | p5@RTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RTN1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 15bp_to_ENST00000433623_5end |
EntrezGene: | RTN1 |
HGNC: | 10467 |
UniProt: | Q2NKQ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 6.56e-16 | 48 |
phagocyte | 6.56e-16 | 48 |
macrophage dendritic cell progenitor | 2.31e-14 | 61 |
classical monocyte | 5.51e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.51e-13 | 42 |
granulocyte monocyte progenitor cell | 2.06e-12 | 67 |
monopoietic cell | 2.14e-12 | 59 |
monocyte | 2.14e-12 | 59 |
monoblast | 2.14e-12 | 59 |
promonocyte | 2.14e-12 | 59 |
intermediate monocyte | 3.41e-11 | 9 |
CD14-positive, CD16-positive monocyte | 3.41e-11 | 9 |
myeloid leukocyte | 7.08e-11 | 72 |
myeloid lineage restricted progenitor cell | 2.23e-10 | 66 |
myeloid cell | 1.09e-09 | 108 |
common myeloid progenitor | 1.09e-09 | 108 |