FF:11634-122C5: Difference between revisions

Latest revision as of 18:12, 4 June 2020

Name:	Mouse Cardiac Myocytes, donor3
Species:	Mouse (Mus musculus)
Library ID:	CNhs12353
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	NA
sex	NA
age	NA
cell type	cardiac muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005984

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12353		CAGE		DRX008818		DRR009690

Accession ID Mm9

Library id		BAM		CTSS
CNhs12353		DRZ001115		DRZ002500

Accession ID Mm10

Library id		BAM		CTSS
CNhs12353		DRZ012465		DRZ013850

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs12353

0	0
1	0
10	0
100	0
1000	0.244
1001	-0.0275
1002	0.673
1003	0.0916
1004	0
1005	0
1006	0.00843
1007	-0.223
1008	0
1009	0.606
101	-0.163
1010	0
1011	-0.263
1012	0
1013	0.139
1014	0
1015	-0.207
1016	-0.0744
1017	0
1018	0
1019	0
102	0
1020	0.664
1021	0.00778
1022	-0.0475
1023	0
1024	-0.14
1025	0
1026	0
1027	0
1028	0.181
1029	-0.115
103	0.308
1030	0
1031	0.577
1032	0.0656
1033	0
1034	0
1035	0
1036	-0.21
1037	0
1038	0.13
1039	-0.0678
104	0
1040	0.574
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12353

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.473
MA0003.1	MA0003.1	0.153
MA0004.1	MA0004.1	0.586
MA0006.1	MA0006.1	0.122
MA0007.1	MA0007.1	0.038
MA0009.1	MA0009.1	0.336
MA0014.1	MA0014.1	0.245
MA0017.1	MA0017.1	0.0866
MA0018.2	MA0018.2	0.0258
MA0019.1	MA0019.1	0.824
MA0024.1	MA0024.1	8.30271e-11
MA0025.1	MA0025.1	0.53
MA0027.1	MA0027.1	0.331
MA0028.1	MA0028.1	0.279
MA0029.1	MA0029.1	0.645
MA0030.1	MA0030.1	0.249
MA0031.1	MA0031.1	0.901
MA0035.2	MA0035.2	0.682
MA0038.1	MA0038.1	0.0202
MA0039.2	MA0039.2	0.203
MA0040.1	MA0040.1	0.187
MA0041.1	MA0041.1	0.466
MA0042.1	MA0042.1	0.65
MA0043.1	MA0043.1	0.101
MA0046.1	MA0046.1	3.17186e-10
MA0047.2	MA0047.2	0.105
MA0048.1	MA0048.1	0.356
MA0050.1	MA0050.1	0.00302
MA0051.1	MA0051.1	0.0873
MA0052.1	MA0052.1	1.93886e-5
MA0055.1	MA0055.1	0.31
MA0057.1	MA0057.1	0.147
MA0058.1	MA0058.1	0.981
MA0059.1	MA0059.1	0.224
MA0060.1	MA0060.1	6.4272e-17
MA0061.1	MA0061.1	0.183
MA0062.2	MA0062.2	0.0738
MA0065.2	MA0065.2	0.399
MA0066.1	MA0066.1	0.342
MA0067.1	MA0067.1	0.969
MA0068.1	MA0068.1	0.189
MA0069.1	MA0069.1	0.137
MA0070.1	MA0070.1	0.831
MA0071.1	MA0071.1	0.584
MA0072.1	MA0072.1	0.981
MA0073.1	MA0073.1	0.249
MA0074.1	MA0074.1	0.679
MA0076.1	MA0076.1	0.0476
MA0077.1	MA0077.1	0.197
MA0078.1	MA0078.1	0.482
MA0079.2	MA0079.2	2.38233e-4
MA0080.2	MA0080.2	0.275
MA0081.1	MA0081.1	0.52
MA0083.1	MA0083.1	1.19174e-11
MA0084.1	MA0084.1	0.888
MA0087.1	MA0087.1	0.943
MA0088.1	MA0088.1	0.919
MA0090.1	MA0090.1	9.38538e-8
MA0091.1	MA0091.1	0.131
MA0092.1	MA0092.1	0.143
MA0093.1	MA0093.1	0.567
MA0099.2	MA0099.2	2.5111e-5
MA0100.1	MA0100.1	0.461
MA0101.1	MA0101.1	0.143
MA0102.2	MA0102.2	0.743
MA0103.1	MA0103.1	2.62458e-4
MA0104.2	MA0104.2	0.0548
MA0105.1	MA0105.1	0.314
MA0106.1	MA0106.1	8.08924e-4
MA0107.1	MA0107.1	0.106
MA0108.2	MA0108.2	0.071
MA0111.1	MA0111.1	0.941
MA0112.2	MA0112.2	0.011
MA0113.1	MA0113.1	0.0293
MA0114.1	MA0114.1	0.0594
MA0115.1	MA0115.1	0.1
MA0116.1	MA0116.1	0.431
MA0117.1	MA0117.1	0.31
MA0119.1	MA0119.1	0.159
MA0122.1	MA0122.1	0.6
MA0124.1	MA0124.1	0.231
MA0125.1	MA0125.1	0.00137
MA0131.1	MA0131.1	0.145
MA0135.1	MA0135.1	0.962
MA0136.1	MA0136.1	0.0688
MA0137.2	MA0137.2	0.145
MA0138.2	MA0138.2	0.393
MA0139.1	MA0139.1	0.524
MA0140.1	MA0140.1	0.984
MA0141.1	MA0141.1	0.739
MA0142.1	MA0142.1	0.169
MA0143.1	MA0143.1	0.681
MA0144.1	MA0144.1	0.0109
MA0145.1	MA0145.1	0.0193
MA0146.1	MA0146.1	0.0251
MA0147.1	MA0147.1	0.0472
MA0148.1	MA0148.1	0.252
MA0149.1	MA0149.1	0.697
MA0150.1	MA0150.1	0.0311
MA0152.1	MA0152.1	0.197
MA0153.1	MA0153.1	1.6401e-8
MA0154.1	MA0154.1	0.0204
MA0155.1	MA0155.1	0.142
MA0156.1	MA0156.1	0.417
MA0157.1	MA0157.1	0.159
MA0159.1	MA0159.1	0.127
MA0160.1	MA0160.1	0.575
MA0162.1	MA0162.1	0.0938
MA0163.1	MA0163.1	0.0363
MA0164.1	MA0164.1	0.825
MA0258.1	MA0258.1	0.444
MA0259.1	MA0259.1	0.195

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12353

Novel motif	Logo	P-value
1	1	0.957
10	10	0.673
100	100	0.315
101	101	0.838
102	102	0.409
103	103	0.551
104	104	0.433
105	105	0.333
106	106	0.0102
107	107	0.168
108	108	0.584
109	109	0.0109
11	11	0.195
110	110	0.128
111	111	0.24
112	112	0.634
113	113	0.874
114	114	0.0706
115	115	0.851
116	116	0.0215
117	117	0.734
118	118	0.561
119	119	0.364
12	12	0.714
120	120	0.175
121	121	0.637
122	122	0.132
123	123	0.699
124	124	0.234
125	125	0.2
126	126	0.48
127	127	0.179
128	128	0.0339
129	129	0.407
13	13	0.204
130	130	0.989
131	131	0.113
132	132	0.737
133	133	0.716
134	134	0.844
135	135	0.712
136	136	0.116
137	137	0.781
138	138	0.882
139	139	0.393
14	14	0.813
140	140	0.367
141	141	0.262
142	142	0.499
143	143	0.173
144	144	0.241
145	145	0.123
146	146	0.669
147	147	0.413
148	148	0.653
149	149	0.00707
15	15	0.184
150	150	0.119
151	151	0.822
152	152	0.00978
153	153	0.481
154	154	0.809
155	155	0.799
156	156	0.796
157	157	0.713
158	158	0.435
159	159	0.108
160	160	0.221
161	161	0.245
162	162	0.731
163	163	0.232
164	164	0.159
165	165	0.276
166	166	0.343
167	167	0.387
168	168	0.619
169	169	0.0185
17	17	0.0327
18	18	0.304
19	19	0.0315
2	2	0.175
20	20	0.706
21	21	0.403
22	22	0.0343
23	23	0.0774
24	24	0.0708
25	25	0.325
26	26	0.156
27	27	0.453
28	28	0.955
29	29	0.26
3	3	0.24
30	30	0.864
31	31	0.533
32	32	0.291
33	33	0.687
34	34	0.7
35	35	0.334
36	36	0.0726
37	37	0.0183
38	38	0.696
39	39	0.453
4	4	0.327
40	40	0.417
41	41	0.768
42	42	0.545
43	43	0.0396
44	44	0.188
45	45	0.414
46	46	0.812
47	47	0.465
48	48	0.637
49	49	0.428
5	5	0.989
50	50	0.106
51	51	1
52	52	0.122
53	53	0.843
54	54	0.807
55	55	0.955
56	56	0.574
57	57	0.506
58	58	0.571
59	59	0.00423
6	6	0.135
60	60	0.116
61	61	0.82
62	62	0.86
63	63	0.109
64	64	0.928
65	65	0.196
66	66	0.809
67	67	0.493
68	68	0.912
69	69	0.26
7	7	0.738
70	70	0.0182
71	71	0.255
72	72	0.627
73	73	0.00287
74	74	0.109
75	75	0.455
76	76	0.634
77	77	0.0248
78	78	0.0469
79	79	0.648
8	8	0.574
80	80	0.0817
81	81	0.17
82	82	0.193
83	83	0.767
84	84	0.133
85	85	0.0186
86	86	0.538
87	87	0.0952
88	88	0.84
89	89	0.205
9	9	0.42
90	90	0.299
91	91	0.925
92	92	0.0155
93	93	0.908
94	94	0.643
95	95	0.0607
96	96	0.0572
97	97	0.319
98	98	0.688
99	99	0.894

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12353

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000106 mouse cardiac myocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000737 (striated muscle cell)
0000746 (cardiac muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000106 (mouse cardiac myocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000513 (cardiac muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008708
+|DRA_sample_Accession=CAGE@SAMD00005984
-|accession_numbers=CAGE;DRX008818;DRR009690;DRZ001115;DRZ002500
+|accession_numbers=CAGE;DRX008818;DRR009690;DRZ001115;DRZ002500;DRZ012465;DRZ013850
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0002494,CL:0000737,CL:0000746
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr9:24578720..24578735,-!p1@Tbx20!2.46!284.14!Tbx20;;chr10:22539932..22539956,-!p1@Tcf21!2.23!430.07!Tcf21;;chr7:19895354..19895369,-!p1@Fosb!1.89!104.68!Fosb;;chr12:86814833..86814846,+!p1@Fos!1.81!1397.99!Fos;;chr8:59799772..59799789,+!p1@Hand2!1.64!118.60!Hand2;;chr14:63864056..63864102,-!p1@Gata4!1.51!53.11!Gata4;;chr16:15887371..15887385,+!p1@Cebpd!1.44!850.34!Cebpd;;chr6:72185210..72185228,-!p3@Atoh8!1.38!38.16!Atoh8;;chr9:48644037..48644067,-!p2@Zbtb16!1.35!52.60!Zbtb16;;chr7:19895384..19895399,-!p2@Fosb!1.33!28.36!Fosb;;chr5:138199361..138199441,+!p2@Tsc22d4!1.32!36.61!Tsc22d4;;chr6:72185232..72185272,-!p1@Atoh8!1.31!54.66!Atoh8;;chr7:119822957..119822980,+!p2@Tead1!1.29!87.66!Tead1;;chr8:87502608..87502623,-!p1@Junb!1.26!275.37!Junb;;chr9:87626083..87626108,-!p1@Tbx18!1.26!37.13!Tbx18;;chr18:35020854..35020869,+!p1@Egr1!1.21!574.97!Egr1;;chr2:152758901..152758925,-!p1@Foxs1!1.17!61.36!Foxs1;;chr7:89137163..89137200,-!p1@Bnc1!1.15!15.99!Bnc1;;chr10:67000609..67000625,+!p1@Egr2!1.13!28.88!Egr2;;chr6:72185553..72185612,-!p2@Atoh8!1.13!24.24!Atoh8;;chr18:11052642..11052659,+!p1@Gata6!1.12!61.36!Gata6;;chr18:11052485..11052508,+!p2@Gata6!1.10!32.49!Gata6;;chr9:63869751..63869767,-!p1@Smad6!1.10!30.42!Smad6;;chr4:135699731..135699747,+!p1@Id3!1.07!1206.67!Id3;;chr16:55822241..55822258,-!p1@Nfkbiz!1.06!325.39!Nfkbiz;;chr15:101097270..101097290,+!p1@Nr4a1!1.03!100.56!Nr4a1;;chr18:11052456..11052477,+!p3@Gata6!1.01!29.39!Gata6;;chr1:165243792..165243808,-!p1@Prrx1!1.00!32.49!Prrx1;;chr2:104966766..104966786,+!p1@Wt1!0.99!13.92!Wt1;;chr12:34642682..34642753,+!p2@Twist1!0.98!23.21!Twist1;;chr13:5860776..5860796,+!p1@Klf6!0.95!194.92!Klf6;;chr2:167363692..167363710,+!p1@Snai1!0.95!99.52!Snai1;;chr15:79178013..79178028,+!p3@Maff!0.94!10.31!Maff;;chr19:23215509..23215523,+!p4@Klf9!0.94!9.80!Klf9;;chr17:26978409..26978442,-!p1@Nkx2-5!0.94!7.74!Nkx2-5;;chr15:79178029..79178044,+!p4@Maff!0.93!9.28!Maff;;chr7:52071956..52071978,-!p1@Atf5!0.91!239.79!Atf5;;chr9:63869834..63869849,-!p5@Smad6!0.91!12.38!Smad6;;chr3:32264530..32264544,-!p2@Zmat3!0.91!11.34!Zmat3;;chr18:11052606..11052633,+!p4@Gata6!0.90!18.05!Gata6;;chr18:75979866..75979890,+!p3@Zbtb7c!0.90!14.95!Zbtb7c;;chr9:48644013..48644027,-!p5@Zbtb16!0.89!8.25!Zbtb16;;chr3:98186461..98186476,+!p2@Zfp697!0.89!6.70!Zfp697;;chr9:63869802..63869815,-!p3@Smad6!0.88!13.41!Smad6;;chr1:52176406..52176433,+!p2@Stat1!0.86!15.99!Stat1;;chr5:32438395..32438406,+!p3@Fosl2!0.86!9.80!Fosl2;;chr15:79178060..79178074,+!p2@Maff!0.86!8.25!Maff;;chr9:96653072..96653154,-!p1@Zbtb38!0.85!17.02!Zbtb38;;chr18:75979828..75979864,+!p2@Zbtb7c!0.85!14.44!Zbtb7c;;chr11:96690797..96690813,-!p1@Nfe2l1!0.84!121.70!Nfe2l1;;chr1:193007123..193007139,-!p1@Atf3!0.83!34.03!Atf3;;chr12:34642510..34642530,+!p1@Twist1!0.83!19.60!Twist1;;chr18:75528166..75528170,+!p3@Smad7!0.83!15.47!Smad7;;chr2:167514456..167514473,+!p1@Cebpb!0.81!262.48!Cebpb;;chr19:23215469..23215494,+!p2@Klf9!0.81!8.77!Klf9;;chr16:43363190..43363242,+!p2@Zbtb20!0.80!17.53!Zbtb20;;chr12:86940338..86940357,+!p1@Jdp2!0.79!55.69!Jdp2;;chr7:119822915..119822936,+!p5@Tead1!0.79!8.77!Tead1;;chr19:10315179..10315241,-!p1@Gm98!0.78!57.24!Gm98;;chr2:152758938..152758954,-!p2@Foxs1!0.78!7.22!Foxs1;;chr18:35020615..35020641,+!p2@Egr1!0.78!6.19!Egr1;;chr18:75527009..75527027,+!p1@Smad7!0.77!113.96!Smad7;;chrX:137077653..137077669,-!p3@Tsc22d3!0.77!24.24!Tsc22d3;;chr5:77543897..77543911,-!p2@Hopx!0.77!9.80!Hopx;;chr4:94718861..94718872,-!p2@Jun!0.76!39.71!Jun;;chr4:43575544..43575565,+!p2@Creb3!0.76!30.42!Creb3;;chr3:32264565..32264613,-!p1@Zmat3!0.75!56.72!Zmat3;;chr9:48644306..48644364,-!p1@Zbtb16!0.75!20.11!Zbtb16;;chr10:88996295..88996335,-!p3@Nr1h4!0.75!5.67!Nr1h4;;chr18:75527030..75527055,+!p2@Smad7!0.74!31.46!Smad7;;chr5:104121453..104121479,+!p4@Aff1!0.73!22.17!Aff1;;chrX:137077716..137077734,-!p1@Tsc22d3!0.72!34.55!Tsc22d3;;chr10:119913278..119913298,-!p2@Hmga2!0.72!10.31!Hmga2;;chr8:74842952..74842970,+!p1@Klf2!0.71!317.14!Klf2;;chr2:152561980..152561997,+!p1@Id1!0.71!135.62!Id1;;chr12:9581262..9581282,+!p1@Osr1!0.71!56.21!Osr1;;chr10:107769168..107769215,+!p1@Pawr!0.71!47.44!Pawr;;chr4:119406412..119406439,+!p2@Hivep3!0.71!8.77!Hivep3;;chr14:18493386..18493464,+!p1@Thrb!0.70!17.02!Thrb;;chr7:17647736..17647772,-!p1@Hif3a!0.70!15.99!Hif3a;;chr19:23215673..23215753,+!p1@Klf9!0.69!65.49!Klf9;;chr2:180069370..180069409,-!p1@Gata5!0.69!4.64!Gata5;;chr5:104121391..104121450,+!p3@Aff1!0.68!22.69!Aff1;;chr4:124805061..124805087,-!p1@Zc3h12a!0.67!12.89!Zc3h12a;;chr1:165243272..165243283,-!p6@Prrx1!0.67!4.64!Prrx1;;chr7:148452314..148452329,-!p1@Irf7!0.66!28.36!Irf7;;chr5:24107779..24107825,-!p1@Smarcd3!0.66!27.33!Smarcd3;;chr15:40486566..40486600,+!p1@Zfpm2!0.66!24.24!Zfpm2;;chr4:119406389..119406411,+!p1@Hivep3!0.66!20.11!Hivep3;;chr5:32438894..32438908,+!p2@Fosl2!0.66!8.25!Fosl2;;chr13:5860872..5860883,+!p3@Klf6!0.66!7.74!Klf6;;chr10:88996336..88996380,-!p2@Nr1h4!0.66!4.64!Nr1h4;;chr18:11052516..11052525,+!p5@Gata6!0.66!3.61!Gata6;;chr10:107769229..107769238,+!p3@Pawr!0.65!5.16!Pawr;;chr16:43364215..43364252,+!p14@Zbtb20!0.65!4.64!Zbtb20;;chrX:137077682..137077692,-!p5@Tsc22d3!0.64!5.67!Tsc22d3;;chr7:30094448..30094481,+!p4@Dpf1!0.64!4.13!Dpf1;;chr11:16908650..16908690,-!p1@Plek!0.63!23.21!Plek;;chrX:137077608..137077619,-!p6@Tsc22d3!0.63!4.64!Tsc22d3;;chr6:144730427..144730508,-!p1@Sox5!0.62!22.69!Sox5;;chr5:34530277..34530292,-!p3@Mxd4!0.62!9.28!Mxd4;;chr7:144506077..144506128,-!p1@Ebf3!0.62!8.25!Ebf3;;chr16:43363152..43363186,+!p3@Zbtb20!0.62!8.25!Zbtb20;;chr1:92895299..92895373,+!p2@Lrrfip1!0.61!76.84!Lrrfip1;;chr1:138521574..138521597,+!p3@Zfp281!0.61!8.25!Zfp281;;chr1:193961837..193961849,-!p3@Rcor3!0.61!6.70!Rcor3;;chrX:7341077..7341091,+!p5@Tfe3!0.61!5.67!Tfe3;;chr2:104966874..104966907,+!p2@Wt1!0.61!3.09!Wt1;;chr16:55819071..55819073,-!p11@Nfkbiz!0.61!3.09!Nfkbiz;;chr6:97879817..97879857,+!p2@Mitf!0.61!3.09!Mitf;;chr6:72185396..72185413,-!p6@Atoh8!0.61!3.09!Atoh8;;chr5:120285144..120285160,+!p1@Tbx5!0.61!3.09!Tbx5;;chr9:63869510..63869530,-!p10@Smad6!0.61!3.09!Smad6;;chr8:87502423..87502439,-!p4@Junb!0.61!3.09!Junb;;chr10:88996274..88996286,-!p4@Nr1h4!0.61!3.09!Nr1h4;;chr12:56593574..56593592,-!p1@Nfkbia!0.60!186.67!Nfkbia;;chr15:79177964..79177986,+!p1@Maff!0.60!11.86!Maff;;chr1:52176378..52176401,+!p3@Stat1!0.60!10.31!Stat1;;chr9:63869850..63869873,-!p2@Smad6!0.60!10.31!Smad6;;chr13:53076382..53076393,-!p2@Nfil3!0.60!5.16!Nfil3;;chr6:90412582..90412601,+!p1@Klf15!0.59!16.50!Klf15;;chr12:9581284..9581303,+!p2@Osr1!0.59!6.19!Osr1;;chr9:63869705..63869713,-!p8@Smad6!0.59!3.61!Smad6;;chrX:66613481..66613562,+!p1@Aff2!0.58!14.44!Aff2;;chr11:96690779..96690790,-!p3@Nfe2l1!0.58!7.74!Nfe2l1;;chr9:63869729..63869749,-!p4@Smad6!0.58!6.19!Smad6;;chr8:123640063..123640077,+!p1@Foxc2!0.58!5.67!Foxc2;;chr16:14705925..14705951,+!p1@Snai2!0.57!23.21!Snai2;;chr6:134780234..134780288,+!p1@Crebl2!0.57!10.31!Crebl2;;chr7:52963269..52963305,+!p4@Dbp!0.57!4.13!Dbp;;chr6:128250380..128250442,-!p2@Tead4!0.57!3.61!Tead4;;chr10:67599319..67599360,-!p2@Arid5b!0.56!36.10!Arid5b;;chr5:32438831..32438878,+!p1@Fosl2!0.56!34.03!Fosl2;;chr14:56223010..56223067,+!p1@Irf9!0.56!25.78!Irf9;;chr7:119822940..119822945,+!p6@Tead1!0.56!3.61!Tead1;;chr10:126727842..126727859,+!p1@Ddit3!0.55!92.31!Ddit3;;chr1:52176315..52176343,+!p1@Stat1!0.55!45.89!Stat1;;chr3:135354384..135354443,-!p1@Nfkb1!0.55!19.08!Nfkb1;;chr2:91864300..91864379,-!p2@Creb3l1!0.55!8.77!Creb3l1;;chr16:43619101..43619151,+!p6@Zbtb20!0.55!7.22!Zbtb20;;chr6:108610766..108610781,+!p2@Bhlhe40!0.55!5.16!Bhlhe40;;chr6:72185179..72185196,-!p4@Atoh8!0.55!3.61!Atoh8;;chr9:63869890..63869908,-!p6@Smad6!0.55!3.61!Smad6;;chr14:56223387..56223401,+!p3@Irf9!0.55!3.09!Irf9;;chr11:100800621..100800633,-!p5@Stat3!0.55!3.09!Stat3;;chr5:31271028..31271040,+!p1@Tcf23!0.55!2.58!Tcf23;;chr19:5424089..5424106,-!p10@Drap1!0.55!2.58!Drap1;;chr2:104967357..104967379,+!p9@Wt1!0.55!2.58!Wt1;;chr2:105003277..105003280,+!p5@Wt1!0.55!2.58!Wt1;;chr9:87625971..87625992,-!p2@Tbx18!0.55!2.58!Tbx18;;chr11:100800671..100800770,-!p1@Stat3!0.54!101.59!Stat3;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.54!11.86!Ppp1r13l;;chr12:54349410..54349461,+!p1@Npas3!0.54!3.09!Npas3;;chrX:7339938..7339963,+!p1@Tfe3!0.53!14.95!Tfe3;;chr11:74981654..74981658,-!p1@Hic1!0.53!11.86!Hic1;;chr5:140267510..140267555,+!p2@Mafk!0.53!6.70!Mafk;;chr4:13712228..13712267,+!p3@Runx1t1!0.53!4.64!Runx1t1;;chr11:98636508..98636524,-!p3@Nr1d1!0.53!3.09!Nr1d1;;chr11:112643496..112643562,+!p1@Sox9!0.52!113.45!Sox9;;chr9:32503590..32503680,+!p1@Ets1!0.52!109.84!Ets1;;chr17:87153240..87153254,+!p1@Epas1!0.52!58.79!Epas1;;chr8:87643578..87643593,-!p1@Zfp791!0.52!5.67!Zfp791;;chr7:71083729..71083742,-!p4@Klf13!0.52!4.64!Klf13;;chr19:23215430..23215441,+!p7@Klf9!0.52!3.09!Klf9;;chr11:72990738..72990763,+!p2@LOC100047518,p2@Tax1bp3!0.51!15.99!Tax1bp3;;chrX:98449898..98449913,+!p2@Foxo4!0.51!8.77!Foxo4;;chr5:137041960..137041977,-!p6@Cux1!0.51!2.58!Cux1;;chr10:127707602..127707633,+!p1@Stat2!0.50!25.27!Stat2;;chr11:98636531..98636559,-!p1@Nr1d1!0.50!15.99!Nr1d1;;chr7:20214704..20214800,-!p1@Relb!0.50!8.77!Relb;;chr5:65194853..65194866,+!p5@Klf3!0.50!7.74!Klf3;;chr1:93698030..93698064,+!p1@Twist2!0.50!5.16!Twist2;;chr19:5423800..5423821,-!p5@Drap1!0.50!3.61!Drap1;;chr8:107793688..107793736,+!p1@Hsf4!0.50!3.09!Hsf4;;chr9:48644284..48644305,-!p4@Zbtb16!0.50!3.09!Zbtb16;;chr6:133986042..133986052,+!p7@Etv6!0.50!3.09!Etv6;;chr5:140267476..140267493,+!p1@Mafk!0.49!15.47!Mafk;;chr6:90412608..90412630,+!p2@Klf15!0.49!5.16!Klf15;;chr12:9581317..9581333,+!p3@Osr1!0.49!3.61!Osr1;;chr5:137042338..137042372,-!p5@Cux1!0.49!2.06!Cux1;;chr19:5447886..5447905,+!p1@Fosl1!0.49!2.06!Fosl1;;chr17:26978521..26978536,-!p2@Nkx2-5!0.49!2.06!Nkx2-5;;chr16:43364258..43364270,+!p27@Zbtb20!0.49!2.06!Zbtb20;;chr16:30064437..30064449,+!p11@Hes1!0.49!2.06!Hes1;;chr4:149611832..149611846,+!p3@LOC100045967,p3@LOC100503183,p4@Eno1,p4@Gm5506!0.49!2.06!Eno1;;chr9:119893782..119893802,-!p1@Csrnp1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@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs12353
-|library_id_phase_based=1:CNhs12353
+|library_id_phase_based=2:CNhs12353
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11634
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11634
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Cardiac%2520Myocytes%252c%2520donor3.CNhs12353.11634-122C5.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Cardiac%2520Myocytes%252c%2520donor3.CNhs12353.11634-122C5.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Cardiac%2520Myocytes%252c%2520donor3.CNhs12353.11634-122C5.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Cardiac%2520Myocytes%252c%2520donor3.CNhs12353.11634-122C5.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Cardiac%2520Myocytes%252c%2520donor3.CNhs12353.11634-122C5.mm9.nobarcode.rdna.fa.gz
 |name=Mouse Cardiac Myocytes, donor3
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12353,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.0360961612233559,0,0,0,0,0,0.276113621756607,0,0,0,0,0.22344427473093,0,0,0,0,0,0,0.115890164244897,0,0,0,0,0,0.307783515127471,0,0,0,0,0,0,0.806815543504326,-0.558422792324031,0,0,0,0,0,-0.209322725495826,0,0.120530099886909,0.619918299409121,0.342282653618704,0.612151291629055,0,0,0,0,0,0,0,0,0,0.180605254120548,0,-0.0660055475634404,0.663673100064972,0,0,0,-0.0428469550828748,0,0,0,0,0,-0.117389802908326,-0.310650657339386,0.0225142113494655,-0.112083794364662,0,-0.0780086007519514,-0.00624408899571427,-0.0198718452153535,0,0,-0.00231778481109257,0.000118209526379004,0.416166843807888,-0.0788315948399074,0,0,0,0,0,0,0.141736586053653,0.0391452144136863,0.0973416680851883,0,0,0,0.446240335714767,0
@@ Line 88: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11634-122C5;search_select_hide=table117:11634-122C5
 }}

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FF:11634-122C5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:12, 4 June 2020

CNhs12353

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0