FF:13003-139B6: Difference between revisions

Latest revision as of 18:48, 4 June 2020

Name:	TSt-4/DLL1 feeder cells, biol_rep3
Species:	Mouse (Mus musculus)
Library ID:	CNhs13409
Sample type:	time courses
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	NA
age	NA
cell type	unclassifiable
cell line	NA
company	NA
collaboration	Tomokatsu Ikawa (RCAI)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005644

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13409		CAGE		DRX008910		DRR009784

Accession ID Mm9

Library id		BAM		CTSS
CNhs13409		DRZ001209		DRZ002592

Accession ID Mm10

Library id		BAM		CTSS
CNhs13409		DRZ012559		DRZ013942

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13409

0	0
1	0
10	0
100	0
1000	0
1001	-0.0749
1002	-0.0941
1003	-0.175
1004	0
1005	-0.182
1006	-0.387
1007	0.859
1008	0
1009	1.089
101	-0.386
1010	0
1011	-0.337
1012	0
1013	0
1014	-0.0874
1015	0.0708
1016	1.098
1017	0
1018	0
1019	0
102	0
1020	0
1021	-0.0487
1022	-0.124
1023	0
1024	-0.307
1025	-0.0611
1026	0
1027	-0.048
1028	0.909
1029	-0.176
103	0
1030	0
1031	0.282
1032	-0.343
1033	-0.0752
1034	0
1035	0
1036	-0.57
1037	0
1038	0.993
1039	-0.146
104	0
1040	1.043
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13409

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	7.6061e-5
MA0003.1	MA0003.1	0.716
MA0004.1	MA0004.1	0.791
MA0006.1	MA0006.1	0.429
MA0007.1	MA0007.1	0.503
MA0009.1	MA0009.1	0.674
MA0014.1	MA0014.1	0.712
MA0017.1	MA0017.1	0.521
MA0018.2	MA0018.2	0.0211
MA0019.1	MA0019.1	0.849
MA0024.1	MA0024.1	0.0224
MA0025.1	MA0025.1	0.649
MA0027.1	MA0027.1	0.523
MA0028.1	MA0028.1	6.53286e-8
MA0029.1	MA0029.1	0.824
MA0030.1	MA0030.1	0.548
MA0031.1	MA0031.1	0.918
MA0035.2	MA0035.2	0.77
MA0038.1	MA0038.1	0.0039
MA0039.2	MA0039.2	8.96027e-5
MA0040.1	MA0040.1	0.734
MA0041.1	MA0041.1	0.271
MA0042.1	MA0042.1	0.604
MA0043.1	MA0043.1	0.0143
MA0046.1	MA0046.1	0.194
MA0047.2	MA0047.2	0.41
MA0048.1	MA0048.1	0.401
MA0050.1	MA0050.1	0.0233
MA0051.1	MA0051.1	0.0226
MA0052.1	MA0052.1	0.953
MA0055.1	MA0055.1	0.333
MA0057.1	MA0057.1	0.792
MA0058.1	MA0058.1	0.954
MA0059.1	MA0059.1	0.519
MA0060.1	MA0060.1	1.99934e-15
MA0061.1	MA0061.1	0.0483
MA0062.2	MA0062.2	2.26006e-10
MA0065.2	MA0065.2	0.12
MA0066.1	MA0066.1	0.00777
MA0067.1	MA0067.1	0.483
MA0068.1	MA0068.1	0.87
MA0069.1	MA0069.1	0.492
MA0070.1	MA0070.1	0.175
MA0071.1	MA0071.1	0.0867
MA0072.1	MA0072.1	0.0412
MA0073.1	MA0073.1	0.979
MA0074.1	MA0074.1	0.234
MA0076.1	MA0076.1	2.16229e-6
MA0077.1	MA0077.1	0.619
MA0078.1	MA0078.1	0.0127
MA0079.2	MA0079.2	0.0741
MA0080.2	MA0080.2	0.479
MA0081.1	MA0081.1	0.0971
MA0083.1	MA0083.1	0.096
MA0084.1	MA0084.1	0.454
MA0087.1	MA0087.1	0.415
MA0088.1	MA0088.1	0.112
MA0090.1	MA0090.1	0.00855
MA0091.1	MA0091.1	0.0576
MA0092.1	MA0092.1	0.112
MA0093.1	MA0093.1	0.972
MA0099.2	MA0099.2	0.023
MA0100.1	MA0100.1	0.376
MA0101.1	MA0101.1	0.738
MA0102.2	MA0102.2	0.92
MA0103.1	MA0103.1	0.754
MA0104.2	MA0104.2	0.448
MA0105.1	MA0105.1	0.0023
MA0106.1	MA0106.1	0.0574
MA0107.1	MA0107.1	0.373
MA0108.2	MA0108.2	0.00111
MA0111.1	MA0111.1	0.49
MA0112.2	MA0112.2	6.68407e-5
MA0113.1	MA0113.1	0.223
MA0114.1	MA0114.1	0.574
MA0115.1	MA0115.1	0.596
MA0116.1	MA0116.1	0.0299
MA0117.1	MA0117.1	0.455
MA0119.1	MA0119.1	0.021
MA0122.1	MA0122.1	0.691
MA0124.1	MA0124.1	0.517
MA0125.1	MA0125.1	0.0249
MA0131.1	MA0131.1	0.0205
MA0135.1	MA0135.1	0.054
MA0136.1	MA0136.1	0.0319
MA0137.2	MA0137.2	0.106
MA0138.2	MA0138.2	0.101
MA0139.1	MA0139.1	0.324
MA0140.1	MA0140.1	0.888
MA0141.1	MA0141.1	0.0127
MA0142.1	MA0142.1	0.579
MA0143.1	MA0143.1	0.00788
MA0144.1	MA0144.1	0.751
MA0145.1	MA0145.1	0.056
MA0146.1	MA0146.1	0.448
MA0147.1	MA0147.1	0.598
MA0148.1	MA0148.1	0.137
MA0149.1	MA0149.1	0.384
MA0150.1	MA0150.1	0.038
MA0152.1	MA0152.1	0.784
MA0153.1	MA0153.1	0.443
MA0154.1	MA0154.1	0.00298
MA0155.1	MA0155.1	0.705
MA0156.1	MA0156.1	0.0106
MA0157.1	MA0157.1	0.31
MA0159.1	MA0159.1	0.143
MA0160.1	MA0160.1	0.0524
MA0162.1	MA0162.1	0.36
MA0163.1	MA0163.1	0.078
MA0164.1	MA0164.1	0.689
MA0258.1	MA0258.1	1.39765e-4
MA0259.1	MA0259.1	0.456

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13409

Novel motif	Logo	P-value
1	1	0.177
10	10	0.588
100	100	0.861
101	101	0.719
102	102	0.617
103	103	0.318
104	104	0.424
105	105	0.0432
106	106	9.14521e-4
107	107	0.00227
108	108	0.702
109	109	0.941
11	11	0.173
110	110	0.15
111	111	0.442
112	112	0.0823
113	113	0.667
114	114	0.0363
115	115	0.205
116	116	0.857
117	117	0.417
118	118	0.626
119	119	0.347
12	12	0.972
120	120	0.607
121	121	0.875
122	122	0.689
123	123	0.355
124	124	0.898
125	125	0.0387
126	126	0.173
127	127	0.32
128	128	0.00548
129	129	0.167
13	13	0.684
130	130	0.672
131	131	0.311
132	132	0.285
133	133	0.977
134	134	0.839
135	135	0.469
136	136	0.112
137	137	0.493
138	138	0.458
139	139	0.0235
14	14	0.667
140	140	0.031
141	141	0.141
142	142	0.909
143	143	0.0056
144	144	0.502
145	145	0.174
146	146	0.959
147	147	0.585
148	148	0.104
149	149	0.0892
15	15	0.148
150	150	0.0544
151	151	0.305
152	152	0.221
153	153	0.0979
154	154	0.706
155	155	0.917
156	156	0.766
157	157	0.24
158	158	0.0798
159	159	0.71
160	160	0.146
161	161	0.277
162	162	0.516
163	163	0.333
164	164	0.421
165	165	0.195
166	166	0.403
167	167	0.999
168	168	0.901
169	169	0.0316
17	17	0.0953
18	18	0.109
19	19	0.0754
2	2	0.476
20	20	0.827
21	21	0.207
22	22	0.101
23	23	0.00559
24	24	0.933
25	25	0.98
26	26	0.0388
27	27	0.669
28	28	0.812
29	29	0.488
3	3	0.171
30	30	0.982
31	31	0.413
32	32	0.41
33	33	0.836
34	34	0.461
35	35	0.0729
36	36	0.691
37	37	0.31
38	38	0.294
39	39	0.458
4	4	0.459
40	40	0.816
41	41	0.0814
42	42	0.323
43	43	0.142
44	44	0.551
45	45	0.483
46	46	0.047
47	47	0.697
48	48	0.734
49	49	0.104
5	5	0.134
50	50	0.843
51	51	0.363
52	52	0.2
53	53	0.57
54	54	0.461
55	55	0.508
56	56	0.708
57	57	0.179
58	58	0.509
59	59	0.0666
6	6	0.97
60	60	0.0783
61	61	0.579
62	62	0.217
63	63	0.204
64	64	0.372
65	65	0.129
66	66	0.206
67	67	0.755
68	68	0.0443
69	69	0.421
7	7	0.389
70	70	0.0235
71	71	0.129
72	72	0.86
73	73	0.32
74	74	0.617
75	75	0.283
76	76	0.331
77	77	0.106
78	78	0.362
79	79	0.935
8	8	0.152
80	80	0.487
81	81	0.402
82	82	0.0216
83	83	0.96
84	84	0.13
85	85	0.134
86	86	0.761
87	87	0.341
88	88	0.751
89	89	0.158
9	9	0.359
90	90	0.0846
91	91	0.0315
92	92	0.0252
93	93	0.00745
94	94	0.00709
95	95	0.172
96	96	0.199
97	97	0.532
98	98	0.39
99	99	0.668

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13409

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011508 mouse TSt-4/DLL1 feeder cells sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002293 (epithelial cell of thymus)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002370 (thymus)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0004177 (hemopoietic organ)
0005057 (immune organ)
0002530 (gland)
0005058 (hemolymphoid system gland)
0010317 (germ layer / neural crest derived structure)
0000153 (anterior region of body)
0002390 (hematopoietic system)
0000949 (endocrine system)
0002193 (hemolymphoid system)
0002405 (immune system)
0009113 (thymic region)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0011508 (mouse TSt-4/DLL1 feeder cells sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008773
+|DRA_sample_Accession=CAGE@SAMD00005644
+|accession_numbers=CAGE;DRX008910;DRR009784;DRZ001209;DRZ002592;DRZ012559;DRZ013942
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002370,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0004177,UBERON:0005057,UBERON:0002530,UBERON:0005058,UBERON:0010317,UBERON:0000153,UBERON:0002390,UBERON:0000949,UBERON:0002193,UBERON:0002405,UBERON:0009113
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002293
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:99057269..99057306,+!p1@Tbx15!2.14!163.55!Tbx15;;chr3:99057256..99057268,+!p3@Tbx15!1.76!56.89!Tbx15;;chr11:44431687..44431706,+!p2@Ebf1!1.73!234.65!Ebf1;;chr15:40486566..40486600,+!p1@Zfpm2!1.72!291.54!Zfpm2;;chr3:66785181..66785199,-!p2@Shox2!1.71!49.77!Shox2;;chr17:44951553..44951586,-!p2@Runx2!1.66!49.77!Runx2;;chr16:14705925..14705951,+!p1@Snai2!1.65!291.54!Snai2;;chr6:72739034..72739055,-!p3@Tcf7l1!1.65!92.44!Tcf7l1;;chr2:30700881..30700916,+!p1@Prrx2!1.64!78.22!Prrx2;;chr19:5447692..5447711,+!p2@Fosl1!1.56!35.55!Fosl1;;chr3:66785201..66785226,-!p3@Shox2!1.56!35.55!Shox2;;chr1:140739014..140739032,-!p1@Lhx9!1.54!42.66!Lhx9;;chr18:35020854..35020869,+!p1@Egr1!1.53!1208.81!Egr1;;chr7:35904304..35904320,+!p1@Cebpa!1.50!597.30!Cebpa;;chr6:83661226..83661282,+!p1@Vax2!1.47!28.44!Vax2;;chr1:165243591..165243625,-!p2@Prrx1!1.39!35.55!Prrx1;;chr13:31898767..31898785,+!p4@Foxc1!1.39!28.44!Foxc1;;chr9:63869834..63869849,-!p5@Smad6!1.35!35.55!Smad6;;chr9:87625971..87625992,-!p2@Tbx18!1.35!21.33!Tbx18;;chr19:55816546..55816556,+!p3@Tcf7l2!1.34!78.22!Tcf7l2;;chr8:94325814..94325839,-!p2@Irx3!1.34!42.66!Irx3;;chr6:115311030..115311065,+!p4@Pparg!1.32!28.44!Pparg;;chr15:97738692..97738747,-!p1@Vdr!1.29!99.55!Vdr;;chr16:14705961..14705978,+!p2@Snai2!1.29!85.33!Snai2;;chr8:94881733..94881790,+!p1@Irx5!1.29!35.55!Irx5;;chr11:44431710..44431725,+!p7@Ebf1!1.28!28.44!Ebf1;;chr13:55932591..55932622,-!p1@Pitx1!1.27!21.33!Pitx1;;chr19:59533221..59533271,+!p1@Emx2!1.26!21.33!Emx2;;chr11:44430812..44430838,+!p1@Ebf1!1.24!156.43!Ebf1;;chr9:63869751..63869767,-!p1@Smad6!1.24!42.66!Smad6;;chr12:74147689..74147711,-!p1@Six1!1.24!35.55!Six1;;chr5:53981692..53981768,+!p2@Rbpj!1.23!284.43!Rbpj;;chr12:34642510..34642530,+!p1@Twist1!1.23!49.77!Twist1;;chr10:119913278..119913298,-!p2@Hmga2!1.23!35.55!Hmga2;;chr13:31898637..31898653,+!p2@Foxc1!1.23!28.44!Foxc1;;chr2:30700857..30700873,+!p3@Prrx2!1.22!21.33!Prrx2;;chr6:72185232..72185272,-!p1@Atoh8!1.20!42.66!Atoh8;;chr1:38684260..38684312,-!p2@Aff3!1.19!99.55!Aff3;;chr11:98603185..98603208,+!p1@Thra!1.18!831.95!Thra;;chr17:37140628..37140631,+!p2@Zfp57!1.18!28.44!Zfp57;;chr16:14705746..14705761,+!p4@Snai2!1.18!14.22!Snai2;;chr19:59533595..59533628,+!p6@Emx2!1.18!14.22!Emx2;;chr1:57029027..57029056,-!p7@Satb2!1.18!14.22!Satb2;;chr1:57028538..57028553,-!p6@Satb2!1.18!14.22!Satb2;;chr1:57028556..57028583,-!p5@Satb2!1.18!14.22!Satb2;;chr15:102820946..102820961,+!p3@Hoxc8!1.18!14.22!Hoxc8;;chr13:55932624..55932641,-!p2@Pitx1!1.18!14.22!Pitx1;;chr15:102751578..102751600,+!p2@Hoxc13!1.18!14.22!Hoxc13;;chr6:6813269..6813272,+!p2@Dlx6!1.18!14.22!Dlx6;;chr8:34496298..34496366,+!p1@Purg!1.17!113.77!Purg;;chr19:28754692..28754757,-!p1@Glis3!1.17!56.89!Glis3;;chr10:119913546..119913583,-!p3@Hmga2!1.17!28.44!Hmga2;;chr1:57029281..57029326,-!p1@Satb2!1.17!21.33!Satb2;;chr1:38684431..38684450,-!p3@Aff3!1.15!21.33!Aff3;;chr13:31898496..31898519,+!p3@Foxc1!1.15!21.33!Foxc1;;chr6:140572167..140572236,+!p2@Aebp2!1.14!127.99!Aebp2;;chr9:87626083..87626108,-!p1@Tbx18!1.14!28.44!Tbx18;;chr19:5424822..5424845,-!p3@Drap1!1.13!49.77!Drap1;;chr15:50721544..50721558,-!p5@Trps1!1.13!28.44!Trps1;;chr19:28754622..28754633,-!p4@Glis3!1.13!14.22!Glis3;;chr1:92895299..92895373,+!p2@Lrrfip1!1.12!248.87!Lrrfip1;;chr17:87153240..87153254,+!p1@Epas1!1.12!234.65!Epas1;;chr2:83484634..83484647,+!p4@Zc3h15!1.12!85.33!Zc3h15;;chr3:30408603..30408668,-!p1@Mecom!1.12!28.44!Mecom;;chr7:144506077..144506128,-!p1@Ebf3!1.12!28.44!Ebf3;;chr1:93698068..93698085,+!p2@Twist2!1.12!14.22!Twist2;;chr15:101097270..101097290,+!p1@Nr4a1!1.11!120.88!Nr4a1;;chr4:107107175..107107204,+!p1@Glis1!1.11!14.22!Glis1;;chr2:83484658..83484678,+!p2@Zc3h15!1.10!184.88!Zc3h15;;chr13:31898729..31898761,+!p1@Foxc1!1.10!28.44!Foxc1;;chr7:144505957..144505972,-!p2@Ebf3!1.10!14.22!Ebf3;;chr17:34169293..34169320,+!p3@Rxrb!1.09!35.55!Rxrb;;chr2:44972869..44972895,-!p12@Zeb2!1.08!21.33!Zeb2;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.08!14.22!Zbtb11;;chr15:40486427..40486437,+!p5@Zfpm2!1.08!14.22!Zfpm2;;chr12:34642682..34642753,+!p2@Twist1!1.07!28.44!Twist1;;chr8:87502608..87502623,-!p1@Junb!1.06!170.66!Junb;;chr18:75979866..75979890,+!p3@Zbtb7c!1.05!21.33!Zbtb7c;;chr15:40486540..40486550,+!p6@Zfpm2!1.05!14.22!Zfpm2;;chr11:97524509..97524595,+!p1@Mllt6!1.04!120.88!Mllt6;;chr12:86940338..86940357,+!p1@Jdp2!1.04!99.55!Jdp2;;chr16:92697560..92697592,-!p2@Runx1!1.04!64.00!Runx1;;chr1:165243792..165243808,-!p1@Prrx1!1.04!35.55!Prrx1;;chr19:26681865..26681900,+!p6@Smarca2!1.03!28.44!Smarca2;;chr5:92391466..92391471,+!p2@Thap6!1.03!14.22!Thap6;;chr17:87153028..87153049,+!p2@Epas1!1.02!199.10!Epas1;;chr2:167363692..167363710,+!p1@Snai1!1.01!113.77!Snai1;;chr18:75979828..75979864,+!p2@Zbtb7c!1.01!21.33!Zbtb7c;;chr19:28754655..28754673,-!p3@Glis3!1.01!14.22!Glis3;;chr15:102300965..102300977,+!p1@Pcbp2!1.00!2879.82!Pcbp2;;chr15:50721588..50721610,-!p1@Trps1!1.00!92.44!Trps1;;chr11:98603160..98603171,+!p3@Thra!1.00!42.66!Thra;;chr7:37483021..37483078,+!p1@Tshz3!1.00!28.44!Tshz3;;chr11:96153767..96153822,+!p1@Hoxb6!1.00!14.22!Hoxb6;;chr19:55817590..55817625,+!p11@Tcf7l2!1.00!14.22!Tcf7l2;;chr17:84587279..84587294,-!p1@Zfp36l2!0.98!917.28!Zfp36l2;;chr8:109817400..109817417,+!p1@Nfat5!0.98!184.88!Nfat5;;chr14:65977324..65977372,+!p2@Zfp395!0.98!49.77!Zfp395;;chr17:34784073..34784118,+!p2@Atf6b!0.98!35.55!Atf6b;;chr8:94325321..94325366,-!p1@Irx3!0.98!21.33!Irx3;;chr11:98821858..98821907,+!p6@Rara!0.98!14.22!Rara;;chr17:69733108..69733129,+!p3@Zfp161!0.97!14.22!Zfp161;;chr6:72185210..72185228,-!p3@Atoh8!0.97!14.22!Atoh8;;chr6:115310872..115310899,+!p2@Pparg!0.96!14.22!Pparg;;chr15:50721239..50721260,-!p9@Trps1!0.96!14.22!Trps1;;chr7:105851808..105851822,+!p3@Prkrir!0.95!28.44!Prkrir;;chr7:71083729..71083742,-!p4@Klf13!0.95!14.22!Klf13;;chr11:44430989..44431015,+!p4@Ebf1!0.94!14.22!Ebf1;;chr1:186556375..186556404,-!p3@Hlx!0.94!14.22!Hlx;;chr5:107125807..107125835,-!p3@Zfp644!0.93!21.33!Zfp644;;chr11:98798983..98799049,+!p1@Rara!0.92!191.99!Rara;;chr7:16986617..16986632,+!p2@Zc3h4!0.92!21.33!Zc3h4;;chr5:53981592..53981616,+!p3@Rbpj!0.92!14.22!Rbpj;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.92!14.22!Zbtb38;;chr13:112476433..112476448,+!p2@Mier3!0.92!14.22!Mier3;;chr14:56443698..56443726,+!p2@Nfatc4!0.92!14.22!Nfatc4;;chr11:112643496..112643562,+!p1@Sox9!0.91!277.32!Sox9;;chr16:4594740..4594759,+!p1@Glis2!0.91!85.33!Glis2;;chr6:72185553..72185612,-!p2@Atoh8!0.91!14.22!Atoh8;;chr5:65194810..65194819,+!p9@Klf3!0.91!14.22!Klf3;;chr7:74517732..74517743,-!p4@Mef2a!0.91!14.22!Mef2a;;chr9:63869510..63869530,-!p10@Smad6!0.91!7.11!Smad6;;chr8:94881639..94881650,+!p5@Irx5!0.91!7.11!Irx5;;chr16:14705668..14705683,+!p3@Snai2!0.91!7.11!Snai2;;chr19:5447886..5447905,+!p1@Fosl1!0.91!7.11!Fosl1;;chr4:115612528..115612533,-!p1@Dmbx1!0.91!7.11!Dmbx1;;chr2:71367142..71367167,+!p2@Dlx1!0.91!7.11!Dlx1;;chr15:102197405..102197454,-!p1@Sp7!0.91!7.11!Sp7;;chr15:102828658..102828678,+!p1@Hoxc6!0.91!7.11!Hoxc6;;chr15:102839948..102839975,+!p3@Hoxc6!0.91!7.11!Hoxc6;;chr13:72766234..72766243,+!p3@Irx2!0.91!7.11!Irx2;;chr13:31717775..31717788,+!p4@Foxf2!0.91!7.11!Foxf2;;chr5:42155788..42155800,-!p1@Nkx3-2!0.91!7.11!Nkx3-2;;chr6:52190858..52190873,-!p4@Hoxa10!0.91!7.11!Hoxa10;;chr19:59534008..59534046,+!p7@Emx2!0.91!7.11!Emx2;;chr1:87497247..87497279,+!p2@Gm2427,p2@Sp140!0.91!7.11!Sp140;;chr2:17986043..17986056,+!p17@Mllt10!0.91!7.11!Mllt10;;chr1:33871436..33871445,-!p6@Zfp451!0.91!7.11!Zfp451;;chr11:102180656..102180663,-!p24@Ubtf!0.91!7.11!Ubtf;;chr10:19076364..19076371,+!p1@Olig3!0.91!7.11!Olig3;;chr11:100721640..100721658,+!p2@Stat5a!0.91!7.11!Stat5a;;chr10:119913266..119913277,-!p6@Hmga2!0.91!7.11!Hmga2;;chr11:100720767..100720797,+!p4@Stat5a!0.91!7.11!Stat5a;;chr19:46380172..46380231,+!p2@Nfkb2!0.90!49.77!Nfkb2;;chr13:21622953..21622972,-!p2@Zfp192!0.90!42.66!Zfp192;;chr9:63869850..63869873,-!p2@Smad6!0.90!21.33!Smad6;;chr8:108160826..108160879,+!p3@Ctcf!0.90!21.33!Ctcf;;chr9:63869802..63869815,-!p3@Smad6!0.90!14.22!Smad6;;chr11:102179074..102179099,-!p4@Ubtf!0.89!21.33!Ubtf;;chr8:107694568..107694586,+!p5@Cbfb!0.89!14.22!Cbfb;;chr14:56443806..56443848,+!p1@Nfatc4!0.89!14.22!Nfatc4;;chr11:102178937..102178956,-!p5@Ubtf!0.88!21.33!Ubtf;;chr8:94881872..94881887,+!p2@Irx5!0.88!7.11!Irx5;;chr11:44431191..44431205,+!p11@Ebf1!0.87!7.11!Ebf1;;chr2:83484681..83484704,+!p1@Zc3h15!0.86!298.65!Zc3h15;;chr15:81641878..81641921,+!p1@Tef!0.86!170.66!Tef;;chr14:31832311..31832343,+!p1@Pbrm1!0.86!64.00!Pbrm1;;chr13:78338288..78338309,-!p7@Nr2f1!0.86!7.11!Nr2f1;;chr16:55838940..55838966,-!p5@Nfkbiz!0.86!7.11!Nfkbiz;;chr5:134790507..134790546,-!p1@Gtf2i!0.85!156.43!Gtf2i;;chr18:83080231..83080254,+!p3@Zfp516!0.85!21.33!Zfp516;;chr5:107125778..107125803,-!p4@Zfp644!0.85!14.22!Zfp644;;chr11:44431626..44431637,+!p10@Ebf1!0.85!7.11!Ebf1;;chr5:140267476..140267493,+!p1@Mafk!0.84!35.55!Mafk;;chr10:67000609..67000625,+!p1@Egr2!0.84!14.22!Egr2;;chr6:6832076..6832092,-!p1@Dlx5!0.84!7.11!Dlx5;;chr15:40486458..40486467,+!p9@Zfpm2!0.84!7.11!Zfpm2;;chr2:127308277..127308313,-!p4@Kcnip3!0.84!7.11!Kcnip3;;chr15:100325682..100325698,-!p1@Csrnp2!0.83!28.44!Csrnp2;;chr15:50721503..50721514,-!p15@Trps1!0.83!7.11!Trps1;;chr19:9016729..9016740,+!p6@Mta2!0.83!7.11!Mta2;;chr1:165243638..165243649,-!p5@Prrx1!0.83!7.11!Prrx1;;chr2:38206744..38206766,+!p1@Lhx2!0.83!7.11!Lhx2;;chr11:6375995..6376105,-!p1@Purb!0.82!106.66!Purb;;chr14:14845141..14845207,+!p1@Atxn7!0.82!42.66!Atxn7;;chr10:92773818..92773906,-!p2@Elk3!0.82!28.44!Elk3;;chr11:102179101..102179130,-!p3@Ubtf!0.82!21.33!Ubtf;;chr15:50720601..50720630,-!p2@Trps1!0.82!14.22!Trps1;;chr6:52176164..52176195,-!p1@Hoxa9!0.82!7.11!Hoxa9;;chr10:126779021..126779032,-!p2@Gli1!0.82!7.11!Gli1;;chr2:71384802..71384815,-!p1@Dlx2!0.82!7.11!Dlx2;;chr2:91864661..91864686,-!p1@Creb3l1!0.81!127.99!Creb3l1;;chr10:80599279..80599353,+!p1@Zbtb7a!0.81!106.66!Zbtb7a;;chr10:75495343..75495405,+!p1@Zfp280b!0.81!49.77!Zfp280b;;chr3:135354384..135354443,-!p1@Nfkb1!0.81!35.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chr8:28087609..28087634,+!p1@Zfp703!0.58!78.22!Zfp703;;chr8:109817363..109817383,+!p2@Nfat5!0.58!71.11!Nfat5;;chr10:80813134..80813211,-!p1@Hmg20b!0.58!64.00!Hmg20b;;chr6:64992801..64992894,+!p2@Smarcad1!0.58!49.77!Smarcad1;;chr1:136456734..136456757,+!p3@Kdm5b!0.58!42.66!Kdm5b;;chr15:81977766..81977789,+!p3@Srebf2!0.58!21.33!Srebf2;;chr7:26067242..26067273,+!p3@Cic!0.58!14.22!Cic;;chr8:87297878..87297935,-!p3@Nfix!0.58!7.11!Nfix;;chr4:84320893..84320910,-!p1@Bnc2!0.58!7.11!Bnc2;;chr1:170361991..170362015,-!p6@Pbx1!0.58!7.11!Pbx1;;chr16:91044627..91044703,-!p1@Gcfc1!0.57!106.66!Gcfc1;;chr18:75527009..75527027,+!p1@Smad7!0.57!71.11!Smad7;;chr8:73905806..73905876,-!p1@Nr2f6!0.57!71.11!Nr2f6;;chr14:79880971..79880992,+!p2@Elf1!0.57!42.66!Elf1;;chr14:22807107..22807119,-!p2@Zfp503!0.57!14.22!Zfp503;;chr8:13339656..13339661,+!p3@Tfdp1!0.57!7.11!Tfdp1;;chr8:87324292..87324303,-!p4@Nfix!0.57!7.11!Nfix;;chr8:13338745..13338756,+!p2@Tfdp1!0.57!7.11!Tfdp1;;chr16:43363152..43363186,+!p3@Zbtb20!0.57!7.11!Zbtb20;;chr4:128483731..128483757,-!p4@Zfp362!0.57!7.11!Zfp362;;chr5:138187195..138187255,+!p1@Tsc22d4!0.56!142.21!Tsc22d4;;chr11:106993428..106993480,-!p1@Bptf!0.56!85.33!Bptf;;chr11:53164378..53164392,+!p2@Aff4!0.56!28.44!Aff4;;chr6:134780163..134780197,+!p2@Crebl2!0.56!7.11!Crebl2;;chr15:102087880..102087927,-!p2@Rarg!0.56!7.11!Rarg;;chr2:44965662..44965685,-!p9@Zeb2!0.56!7.11!Zeb2;;chr17:13897299..13897342,+!p3@Mllt4!0.56!7.11!Mllt4;;chr8:125897678..125897746,+!p1@Tcf25!0.55!647.07!Tcf25;;chr7:134488857..134488914,-!p1@Zfp768!0.55!42.66!Zfp768;;chr17:24806629..24806672,+!p1@Zfp598!0.55!35.55!Zfp598;;chr3:32264565..32264613,-!p1@Zmat3!0.55!35.55!Zmat3;;chr2:165213745..165213815,-!p1@Zfp334!0.55!28.44!Zfp334;;chr8:107694661..107694713,+!p2@Cbfb!0.55!21.33!Cbfb;;chr17:37139472..37139514,+!p1@Zfp57!0.55!21.33!Zfp57;;chr8:108583550..108583595,+!p2@Nfatc3!0.55!14.22!Nfatc3;;chr9:32349240..32349276,-!p2@Fli1!0.55!7.11!Fli1;;chr5:24107993..24108036,-!p2@Smarcd3!0.55!7.11!Smarcd3;;chr18:7004715..7004731,-!p1@Mkx!0.55!7.11!Mkx;;chr16:43619101..43619151,+!p6@Zbtb20!0.55!7.11!Zbtb20;;chr4:97444261..97444272,+!p9@Nfia!0.55!7.11!Nfia;;chr15:57526316..57526332,+!p4@Zhx2!0.55!7.11!Zhx2;;chr9:32503590..32503680,+!p1@Ets1!0.54!113.77!Ets1;;chr9:65675514..65675547,-!p2@Zfp609!0.54!14.22!Zfp609;;chr6:39068210..39068251,-!p1@Parp12!0.54!14.22!Parp12;;chr6:92042363..92042413,+!p3@Nr2c2!0.54!7.11!Nr2c2;;chr12:86814833..86814846,+!p1@Fos!0.53!71.11!Fos;;chr7:16986536..16986582,+!p1@Zc3h4!0.53!64.00!Zc3h4;;chr9:72380021..72380078,+!p1@Rfx7!0.53!56.89!Rfx7;;chr18:36440723..36440805,+!p1@Pura!0.53!49.77!Pura;;chr11:100711801..100711910,-!p1@Stat5b!0.53!42.66!Stat5b;;chr7:88005795..88005858,+!p1@Zscan2!0.53!21.33!Zscan2;;chr19:28086045..28086080,-!p4@Rfx3!0.53!14.22!Rfx3;;chr17:23701084..23701128,-!p1@Zfp213!0.53!14.22!Zfp213;;chr1:64579555..64579570,+!p3@Creb1!0.53!14.22!Creb1;;chr2:168032375..168032388,-!p4@Adnp!0.53!7.11!Adnp;;chr16:42907554..42907591,+!p5@Zbtb20!0.53!7.11!Zbtb20;;chr17:71200558..71200572,-!p4@Tgif1!0.53!7.11!Tgif1;;chr18:83080255..83080277,+!p4@Zfp516!0.53!7.11!Zfp516;;chr8:111227738..111227793,+!p@chr8:111227738..111227793,+!0.53!7.11!Zfhx3;;chr7:25292160..25292213,+!p3@Zfp428!0.53!7.11!Zfp428;;chr13:67433461..67433489,-!p2@Zfp595!0.53!7.11!Zfp595;;chr15:35225845..35225867,+!p1@Osr2!0.53!7.11!Osr2;;chr11:44430788..44430804,+!p3@Ebf1!0.53!7.11!Ebf1;;chr5:65194789..65194800,+!p7@Klf3!0.53!7.11!Klf3;;chr7:135020412..135020433,+!p2@Zfp646!0.53!7.11!Zfp646;;chr2:120389531..120389614,-!p1@Zfp106!0.52!220.43!Zfp106;;chr4:34830168..34830213,-!p1@Zfp292!0.52!113.77!Zfp292;;chr1:136456791..136456810,+!p1@Kdm5b!0.52!106.66!Kdm5b;;chr12:110031495..110031585,+!p1@Yy1!0.52!78.22!Yy1;;chr6:122769906..122769956,+!p1@Foxj2!0.52!49.77!Foxj2;;chr14:76814539..76814600,+!p2@Tsc22d1!0.52!42.66!Tsc22d1;;chr8:109620410..109620462,-!p1@Terf2!0.52!28.44!Terf2;;chr17:34169016..34169068,+!p2@Rxrb!0.52!21.33!Rxrb;;chr7:119822957..119822980,+!p2@Tead1!0.52!14.22!Tead1;;chr11:59285966..59285990,-!p2@Zfp867!0.52!7.11!Zfp867;;chr11:80196801..80196806,+!p2@Zfp207!0.51!42.66!Zfp207;;chr17:28314075..28314159,+!p1@Zfp523!0.51!35.55!Zfp523;;chr12:36219645..36219730,-!p1@Ahr!0.51!28.44!Ahr;;chr8:124900562..124900573,+!p3@Zc3h18!0.51!7.11!Zc3h18;;chr5:138187181..138187192,+!p5@Tsc22d4!0.51!7.11!Tsc22d4;;chr7:52071956..52071978,-!p1@Atf5!0.50!92.44!Atf5;;chr14:22807083..22807104,-!p1@Zfp503!0.50!49.77!Zfp503;;chr2:17986191..17986271,+!p1@Mllt10!0.50!49.77!Mllt10;;chr1:179372411..179372509,+!p1@Zfp238!0.50!35.55!Zfp238;;chr7:6107541..6107572,-!p1@Zfp787!0.50!21.33!Zfp787;;chr9:96653072..96653154,-!p1@Zbtb38!0.50!7.11!Zbtb38;;chr15:100058289..100058300,+!p3@Atf1!0.50!7.11!Atf1;;chr15:57907991..57908010,-!p3@Zhx1,p6@9130401M01Rik!0.50!7.11!Zhx1;;chr10:127080141..127080160,+!p2@Stat6!0.50!7.11!Stat6;;chr4:135699731..135699747,+!p1@Id3!0.49!319.98!Id3;;chr15:81977668..81977705,+!p1@Srebf2!0.49!213.32!Srebf2;;chr8:26951227..26951266,-!p1@Ash2l!0.49!113.77!Ash2l;;chr1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cp2!0.38!49.77!Mecp2;;chr2:32218712..32218782,+!p2@Ciz1!0.38!21.33!Ciz1;;chr14:19071466..19071550,-!p1@Nr1d2!0.38!14.22!Nr1d2;;chr11:62270791..62270834,-!p1@Ncor1!0.37!106.66!Ncor1;;chr19:5424906..5425026,-!p1@Drap1!0.37!56.89!Drap1;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!0.37!21.33!Camta2;;chr1:36364590..36364608,+!p1@Arid5a!0.37!21.33!Arid5a;;chr2:164860321..164860359,-!p2@Ncoa5!0.37!14.22!Ncoa5;;chr4:128483534..128483613,-!p1@Zfp362!0.37!14.22!Zfp362;;chr4:128483680..128483715,-!p3@Zfp362!0.37!7.11!Zfp362;;chr4:54960870..54960926,+!p1@Zfp462!0.37!7.11!Zfp462;;chr7:4866778..4866801,+!p3@Zfp628!0.37!7.11!Zfp628;;chr8:114167325..114167350,+!p2@Zfp1!0.37!7.11!Zfp1;;chr8:81923412..81923431,-!p2@Smad1!0.37!7.11!Smad1;;chr7:25292331..25292421,+!p1@Zfp428!0.36!14.22!Zfp428;;chr18:76401314..76401395,+!p2@Smad2!0.36!14.22!Smad2;;chr4:62626594..62626651,+!p1@Zfp618!0.36!7.11!Zfp618;;chr11:59285934..59285962,-!p1@Zfp867!0.36!7.11!Zfp867;;chr1:173341436..173341468,+!p1@Usf1!0.35!49.77!Usf1;;chr17:21625946..21626024,+!p1@Zfp53!0.35!21.33!Zfp53;;chr10:57206160..57206220,+!p1@Hsf2!0.35!21.33!Hsf2;;chr8:81923350..81923361,-!p3@Smad1!0.35!7.11!Smad1;;chr14:75684150..75684197,+!p1@Zc3h13!0.34!64.00!Zc3h13;;chr7:88138544..88138584,+!p1@Zfp592!0.34!49.77!Zfp592;;chr13:48356475..48356492,+!p1@Id4!0.34!42.66!Id4;;chr7:134170081..134170122,-!p2@Maz!0.34!35.55!Maz;;chr1:95651138..95651255,-!p1@Thap4!0.34!28.44!Thap4;;chr2:166888107..166888224,-!p1@Znfx1!0.34!28.44!Znfx1;;chr7:4967068..4967111,+!p1@Zfp524!0.34!21.33!Zfp524;;chr10:67599319..67599360,-!p2@Arid5b!0.34!21.33!Arid5b;;chr10:80813050..80813114,-!p2@Hmg20b!0.34!21.33!Hmg20b;;chr4:97444012..97444045,+!p4@Nfia!0.34!14.22!Nfia;;chr7:148513599..148513636,-!p3@Deaf1!0.34!7.11!Deaf1;;chr12:77470507..77470572,-!p2@Zbtb25!0.34!7.11!Zbtb25;;chr17:34730333..34730362,+!p2@Pbx2!0.34!7.11!Pbx2;;chr2:167514456..167514473,+!p1@Cebpb!0.33!85.33!Cebpb;;chr7:5003117..5003159,+!p1@Zfp580!0.33!14.22!Zfp580;;chr2:83484738..83484749,+!p5@Zc3h15!0.33!7.11!Zc3h15;;chr19:5637501..5637517,+!p4@Rela!0.33!7.11!Rela;;chr10:5959061..5959104,+!p2@Zbtb2!0.33!7.11!Zbtb2;;chr19:5424768..5424811,-!p2@Drap1!0.32!35.55!Drap1;;chr17:33766023..33766059,+!p1@Zfp414!0.32!28.44!Zfp414;;chr6:48036529..48036657,-!p1@Zfp746!0.32!28.44!Zfp746;;chr8:4613152..4613177,+!p1@Zfp958!0.32!21.33!Zfp958;;chr17:4994904..4994953,+!p3@Arid1b!0.32!14.22!Arid1b;;chr17:48061605..48061629,-!p6@Foxp4!0.32!7.11!Foxp4;;chr17:25152743..25152766,-!p2@Cramp1l!0.32!7.11!Cramp1l;;chr16:33380950..33380988,+!p2@Zfp148!0.32!7.11!Zfp148;;chr7:26053413..26053439,+!p4@Cic!0.32!7.11!Cic;;chr4:133309531..133309581,-!p4@Arid1a!0.32!7.11!Arid1a;;chr7:13595144..13595205,-!p1@Zbtb45!0.31!35.55!Zbtb45;;chr9:106356211..106356242,+!p1@Pcbp4!0.31!35.55!Pcbp4;;chr2:91489908..91489941,-!p1@Zfp408!0.31!14.22!Zfp408;;chr11:52096804..52096896,-!p1@Tcf7!0.31!14.22!Tcf7;;chr10:114821444..114821491,-!p1@Thap2!0.31!14.22!Thap2;;chr2:73730619..73730630,-!p4@Atf2,p4@LOC100047997!0.31!7.11!Atf2;;chrX:132420525..132420558,+!p3@Bhlhb9!0.31!7.11!Bhlhb9;;chr19:26681672..26681716,+!p5@Smarca2!0.31!7.11!Smarca2;;chrX:53599567..53599592,+!p1@Zfp449!0.31!7.11!Zfp449;;chr5:125343044..125343141,+!p1@Zfp664!0.30!78.22!Zfp664;;chr1:64579394..64579433,+!p1@Creb1!0.30!64.00!Creb1;;chr7:119822841..119822887,+!p1@Tead1!0.30!56.89!Tead1;;chr17:4995902..4995959,+!p1@Arid1b!0.30!42.66!Arid1b;;chr1:64167972..64168026,-!p1@Klf7!0.30!42.66!Klf7;;chr12:72116953..72117050,+!p1@Arid4a!0.30!21.33!Arid4a;;chr14:52935876..52935928,-!p1@Sall2!0.30!14.22!Sall2;;chr6:47785649..47785724,+!p1@Zfp398!0.30!14.22!Zfp398;;chr6:47827619..47827639,+!p2@Zfp282!0.30!7.11!Zfp282;;chr7:134170038..134170055,-!p8@Maz!0.30!7.11!Maz;;chr9:106356243..106356264,+!p2@Pcbp4!0.30!7.11!Pcbp4;;chr12:78063165..78063227,-!p1@Max!0.29!149.32!Max;;chr8:23970000..23970026,+!p1@Myst3!0.29!92.44!Myst3;;chr4:82151178..82151262,-!p1@Nfib!0.29!71.11!Nfib;;chr11:100800671..100800770,-!p1@Stat3!0.29!56.89!Stat3;;chr4:82151653..82151706,-!p2@Nfib!0.29!49.77!Nfib;;chr13:14156043..14156089,+!p1@Arid4b!0.29!42.66!Arid4b;;chr4:102787007..102787050,+!p1@Mier1!0.29!28.44!Mier1;;chr11:5420954..5420969,+!p2@Xbp1!0.29!21.33!Xbp1;;chr6:47870583..47870635,+!p1@Zfp212!0.29!21.33!Zfp212;;chr14:31832369..31832400,+!p3@Pbrm1!0.29!14.22!Pbrm1;;chr17:46520674..46520741,+!p1@Zfp318!0.29!14.22!Zfp318;;chr7:17200019..17200060,-!p4@Grlf1!0.29!7.11!Grlf1;;chr13:64254457..64254497,-!p1@Zfp367!0.29!7.11!Zfp367;;chr10:75384307..75384370,-!p1@Smarcb1!0.28!135.10!Smarcb1;;chr11:95171500..95171527,-!p1@Myst2!0.28!106.66!Myst2;;chr2:152561980..152561997,+!p1@Id1!0.28!49.77!Id1;;chr12:100801772..100801861,-!p1@Foxn3!0.28!35.55!Foxn3;;chr11:53583544..53583559,+!p1@Irf1!0.28!28.44!Irf1;;chr4:133310237..133310293,-!p2@Arid1a!0.28!21.33!Arid1a;;chr3:152059628..152059666,+!p2@Gm8261,p2@Zzz3!0.28!14.22!Zzz3;;chr11:50872733..50872809,+!p1@Zfp354a!0.28!7.11!Zfp354a;;chr8:124900576..124900601,+!p2@Zc3h18!0.28!7.11!Zc3h18;;chr7:6124098..6124133,+!p1@Zfp444!0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Foxo3!0.16!21.33!Foxo3;;chr15:75672337..75672362,-!p1@Zc3h3!0.16!14.22!Zc3h3;;chr17:48061381..48061399,-!p1@Foxp4!0.16!14.22!Foxp4;;chr19:53403914..53403968,+!p2@Mxi1!0.16!14.22!Mxi1;;chr7:17199897..17199955,-!p1@Grlf1!0.16!14.22!Grlf1;;chr11:80196811..80196838,+!p1@Zfp207!0.15!220.43!Zfp207;;chr11:59319701..59319741,-!p1@Zkscan17!0.15!14.22!Zkscan17;;chr18:69505797..69505852,+!p2@Tcf4!0.15!14.22!Tcf4;;chr17:21587325..21587361,+!p1@Zfp51!0.15!7.11!Zfp51;;chr2:120996843..120996894,-!p1@Zscan29!0.15!7.11!Zscan29;;chr14:76814601..76814630,+!p5@Tsc22d1!0.15!7.11!Tsc22d1;;chr1:170362273..170362317,-!p1@Pbx1!0.14!35.55!Pbx1;;chr10:126727842..126727859,+!p1@Ddit3!0.14!35.55!Ddit3;;chr6:92041430..92041460,+!p1@Nr2c2!0.14!28.44!Nr2c2;;chr12:9581262..9581282,+!p1@Osr1!0.14!14.22!Osr1;;chr13:37918486..37918575,+!p2@Rreb1!0.14!7.11!Rreb1;;chr11:98821749..98821799,+!p2@Rara!0.14!7.11!Rara;;chr10:82226649..82226694,-!p2@Nfyb!0.14!7.11!Nfyb;;chr18:75527030..75527055,+!p2@Smad7!0.14!7.11!Smad7;;chr9:69137716..69137744,+!p1@Rora!0.14!7.11!Rora;;chr3:52072315..52072327,+!p2@Foxo1!0.14!7.11!Foxo1;;chr2:156665817..156665877,+!p1@Tgif2!0.14!7.11!Tgif2;;chr2:162880387..162880413,+!p1@Mybl2!0.14!7.11!Mybl2;;chr4:149943647..149943707,+!p2@Rere!0.13!21.33!Rere;;chr1:33871252..33871313,-!p2@Zfp451!0.13!14.22!Zfp451;;chr17:48061584..48061601,-!p2@Foxp4!0.13!7.11!Foxp4;;chr7:17200422..17200487,-!p3@Grlf1!0.13!7.11!Grlf1;;chr19:6996294..6996324,-!p2@Esrra!0.12!7.11!Esrra;;chr12:28027561..28027591,-!p1@Sox11!0.12!7.11!Sox11;;chr9:110034519..110034606,+!p1@Smarcc1!0.11!49.77!Smarcc1;;chr4:40216811..40216882,-!p1@Topors!0.11!21.33!Topors;;chr18:61336648..61336711,-!p1@Hmgxb3!0.11!21.33!Hmgxb3;;chr11:100800771..100800798,-!p2@Stat3!0.11!7.11!Stat3;;chrX:7339778..7339815,+!p2@Tfe3!0.11!7.11!Tfe3;;chr15:100382390..100382441,-!p1@Tfcp2!0.11!7.11!Tfcp2;;chr14:65977498..65977528,+!p1@Zfp395!0.11!7.11!Zfp395;;chrX:103124643..103124660,-!p2@Atrx!0.11!7.11!Atrx;;chr8:125897750..125897758,+!p2@Tcf25!0.11!7.11!Tcf25;;chr7:51809271..51809325,-!p1@Nr1h2!0.10!64.00!Nr1h2;;chr11:96690797..96690813,-!p1@Nfe2l1!0.10!21.33!Nfe2l1;;chr9:31088110..31088151,+!p1@Prdm10!0.10!7.11!Prdm10;;chr7:148452314..148452329,-!p1@Irf7!0.10!7.11!Irf7;;chr5:104183219..104183236,+!p2@Aff1!0.10!7.11!Aff1;;chr12:56593574..56593592,-!p1@Nfkbia!0.09!56.89!Nfkbia;;chr10:33670996..33671069,-!p1@Zufsp!0.09!21.33!Zufsp;;chr11:106134020..106134128,-!p1@Smarcd2!0.09!21.33!Smarcd2;;chr17:28487692..28487765,-!p1@Tead3!0.09!21.33!Tead3;;chr7:36587987..36588026,-!p1@Zfp507!0.09!14.22!Zfp507;;chr1:33871361..33871418,-!p1@Zfp451!0.09!14.22!Zfp451;;chr11:58717675..58717719,-!p1@Zfp39!0.09!7.11!Zfp39;;chr13:96095150..96095184,+!p2@Zbed3!0.09!7.11!Zbed3;;chr7:13563183..13563249,+!p1@Zfp446!0.09!7.11!Zfp446;;chr5:145992626..145992652,+!p2@Zfp655!0.09!7.11!Zfp655;;chr18:74375851..74375891,+!p1@Cxxc1!0.08!42.66!Cxxc1;;chr15:76307834..76307891,+!p1@Hsf1!0.08!42.66!Hsf1;;chr5:38611720..38611799,+!p1@Lyar!0.08!28.44!Lyar;;chr19:5637736..5637766,+!p1@Rela!0.08!28.44!Rela;;chr6:128312937..128313076,+!p1@Foxm1!0.08!14.22!Foxm1;;chr17:32967140..32967197,-!p1@Zfp799!0.08!14.22!Zfp799;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!0.08!7.11!Hmga1;;chr1:170362242..170362256,-!p3@Pbx1!0.08!7.11!Pbx1;;chr1:135557922..135557963,-!p1@Zc3h11a!0.07!120.88!Zc3h11a;;chr15:80085920..80085941,+!p1@Atf4!0.07!120.88!Atf4;;chr17:57074836..57074927,-!p1@Mllt1!0.07!28.44!Mllt1;;chr10:67741461..67741483,-!p1@Arid5b!0.07!28.44!Arid5b;;chr10:93610652..93610711,+!p1@Nr2c1!0.07!14.22!Nr2c1;;chr11:100721761..100721851,+!p1@Stat5a!0.07!7.11!Stat5a;;chr17:25325325..25325363,+!p1@Unkl!0.07!7.11!Unkl;;chr16:4213951..4213995,-!p@chr16:4213951..4213995,-!0.06!28.44!Crebbp;;chr7:71083428..71083518,-!p3@Klf13!0.06!7.11!Klf13;;chr7:30739068..30739108,-!p1@Zfp74!0.06!7.11!Zfp74;;chr13:112476511..112476554,+!p1@Mier3!0.06!7.11!Mier3;;chr5:36826883..36826951,-!p1@Tada2b!0.06!7.11!Tada2b;;chr4:94718861..94718872,-!p2@Jun!0.06!7.11!Jun;;chr3:95238308..95238343,+!p1@Arnt!0.05!42.66!Arnt;;chr8:107821563..107821642,+!p1@E2f4!0.05!28.44!E2f4;;chr9:71959634..71959702,-!p2@Tcf12!0.05!7.11!Tcf12;;chr11:50641183..50641244,-!p1@Zfp354c!0.05!7.11!Zfp354c;;chr11:121121297..121121369,+!p1@Foxk2!0.04!56.89!Foxk2;;chr11:83943084..83943122,-!p1@Tada2a!0.04!14.22!Tada2a;;chr9:96096707..96096772,+!p1@Tfdp2!0.04!14.22!Tfdp2;;chr3:87329494..87329565,+!p1@Etv3!0.04!14.22!Etv3;;chr7:71083876..71083932,-!p2@Klf13!0.04!7.11!Klf13;;chr10:79862134..79862173,-!p3@Mbd3!0.04!7.11!Mbd3;;chr14:56223010..56223067,+!p1@Irf9!0.04!7.11!Irf9;;chr17:57170891..57170961,-!p1@Khsrp!0.03!85.33!Khsrp;;chr12:81213989..81214006,-!p1@Zfp36l1!0.03!49.77!Zfp36l1;;chr5:31262609..31262693,-!p1@Preb!0.03!49.77!Preb;;chr2:32218524..32218662,+!p1@Ciz1!0.03!21.33!Ciz1;;chr5:76733756..76733815,-!p1@Clock!0.03!14.22!Clock;;chr2:160698681..160698708,-!p2@Zhx3!0.03!7.11!Zhx3;;chr13:67601387..67601448,-!p2@Zfp58!0.03!7.11!Zfp58;;chr5:25004566..25004590,-!p1@Mll3!0.02!21.33!Mll3;;chr9:20757282.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@@ Line 42: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011508
 |is_obsolete=
-|library_ids=CNhs13409
+|library_id=CNhs13409
+|library_id_phase_based=2:CNhs13409
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;13003
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;13003
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/TSt-4%252fDLL1%2520feeder%2520cells%252c%2520biol_rep3.CNhs13409.13003-139B6.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/TSt-4%252fDLL1%2520feeder%2520cells%252c%2520biol_rep3.CNhs13409.13003-139B6.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/TSt-4%252fDLL1%2520feeder%2520cells%252c%2520biol_rep3.CNhs13409.13003-139B6.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/TSt-4%252fDLL1%2520feeder%2520cells%252c%2520biol_rep3.CNhs13409.13003-139B6.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/TSt-4%252fDLL1%2520feeder%2520cells%252c%2520biol_rep3.CNhs13409.13003-139B6.mm9.nobarcode.rdna.fa.gz
 |name=TSt-4/DLL1 feeder cells, biol_rep3
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13409,LSID1023,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,-0.137162351511999,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.558422792324031,0,0,0,0,-0.0220474249698256,-0.209322725495826,-0.0661618130246221,0.523416361824604,-0.984211366477826,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.0428469550828748,0,0,0,0,-0.0493772202009075,-0.243225778194271,-0.310650657339386,-0.158091042771083,-0.140687683267293,0,0,-0.0156378213330789,0,0,0,0,0.289649548146781,0.586537836795041,-0.0788315948399074,0,0,0,0,0,0,0.383629529799905,-0.27895523466614,0.321423356536406,0,0,0,0,0
@@ Line 62: / Line 74: @@
 |rna_sample_type=
 |rna_tube_id=139B6
-|rna_weight_ug=8.90
+|rna_weight_ug=8.9
 |sample_age=
 |sample_category=time courses
@@ Line 83: / Line 95: @@
 |sample_strain=
 |sample_tissue=
+|timecourse=T-cell_differentiation
 |top_motifs=PDX1:3.27559609126;HBP1_HMGB_SSRP1_UBTF:2.21059248688;ZNF238:1.94122243259;EBF1:1.90663061456;GLI1..3:1.67726410956;FOXP3:1.64744214424;NFE2L2:1.57484179933;MTE{core}:1.51313258748;NR3C1:1.43419904183;NKX2-2,8:1.36656828787;TAL1_TCF{3,4,12}:1.3548403796;SMAD1..7,9:1.3192746769;POU3F1..4:1.25834675737;BACH2:1.25806525581;STAT5{A,B}:1.25524165692;PAX8:1.19955692286;ALX1:1.18956129271;TEAD1:1.13369181648;bHLH_family:1.11826764135;TFDP1:1.0841653283;NR6A1:1.05727450617;TLX1..3_NFIC{dimer}:1.04688391806;SPZ1:1.01351540519;PITX1..3:1.01303498566;GFI1B:0.97007683648;HMGA1,2:0.964995655534;HIC1:0.952598795413;RORA:0.87770946963;ONECUT1,2:0.864363294137;HOXA9_MEIS1:0.861181037171;SOX17:0.859556580353;SOX5:0.859076002612;VSX1,2:0.849432441978;ESR1:0.830017818268;NFATC1..3:0.77525760177;FOX{F1,F2,J1}:0.757949889882;NKX6-1,2:0.735018670874;FOXD3:0.717363206018;FOSL2:0.706986572387;HLF:0.680494713343;PAX6:0.673565586615;NKX3-1:0.6605066925;HES1:0.612575818698;ADNP_IRX_SIX_ZHX:0.611525974502;PPARG:0.610660228991;HMX1:0.604635437516;HOX{A4,D4}:0.57914418663;TFAP2B:0.575914224752;HOX{A5,B5}:0.571339699218;RUNX1..3:0.564014120695;CDX1,2,4:0.545126866604;SRF:0.499331364298;MYB:0.476912885756;NFE2:0.474559927301;FOS_FOS{B,L1}_JUN{B,D}:0.459715897397;GTF2I:0.449497657317;NR1H4:0.442380555158;ALX4:0.426948382773;MYBL2:0.410408605434;TLX2:0.409726881079;TEF:0.407452253971;NKX2-3_NKX2-5:0.400263237569;HIF1A:0.365839823888;HSF1,2:0.35488859697;STAT2,4,6:0.344343890391;DMAP1_NCOR{1,2}_SMARC:0.344052249567;RXRA_VDR{dimer}:0.332926796266;ZBTB16:0.324697690727;MAFB:0.322394751172;AR:0.31367465613;NFIL3:0.29964358789;TP53:0.2981919525;EN1,2:0.279084393869;NFKB1_REL_RELA:0.256633153223;HAND1,2:0.222562809006;EGR1..3:0.21806283148;FOXM1:0.206519552992;PRDM1:0.195298801893;IKZF1:0.194400275305;POU5F1:0.190458685103;PATZ1:0.189538919589;MZF1:0.183568057044;AIRE:0.170140543003;JUN:0.162446174617;ZNF423:0.13565978252;RREB1:0.0960465138767;MYFfamily:0.089059987806;FOXQ1:0.0698612745428;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0688676064768;RXR{A,B,G}:0.0576205409137;TFAP2{A,C}:0.0126597147008;TFAP4:0.0091508658854;MED-1{core}:0.00406643612478;PAX4:-0.000965633223227;GATA4:-0.0104861729644;AHR_ARNT_ARNT2:-0.0117901823001;NFIX:-0.0405942471563;ZFP161:-0.041348339273;RFX1:-0.0419340529731;FOX{D1,D2}:-0.0477922812374;PAX1,9:-0.0543828940114;CRX:-0.0645495187867;OCT4_SOX2{dimer}:-0.0662684261426;MTF1:-0.0881598539577;FOXP1:-0.0902085482098;NR5A1,2:-0.12283397902;PRRX1,2:-0.136001457329;NANOG:-0.151247464935;IKZF2:-0.15879688769;RFX2..5_RFXANK_RFXAP:-0.172622805878;TBX4,5:-0.183264484317;TOPORS:-0.184286854121;MEF2{A,B,C,D}:-0.190820876686;ZNF384:-0.201645773477;FOXO1,3,4:-0.205119735681;ESRRA:-0.207622536874;NKX3-2:-0.215824764451;CEBPA,B_DDIT3:-0.225513179306;ZBTB6:-0.229539330264;TGIF1:-0.232747826699;SPIB:-0.245518310026;TFCP2:-0.251062436646;T:-0.252167194847;POU6F1:-0.259833264666;HNF1A:-0.268013094533;PAX5:-0.269620627134;ETS1,2:-0.297137269849;FOXA2:-0.320821823644;ZNF148:-0.327031551884;LHX3,4:-0.328019457653;SOX2:-0.340839919394;CUX2:-0.342834037534;GCM1,2:-0.354263514965;UFEwm:-0.377568244203;NANOG{mouse}:-0.393729854157;MAZ:-0.401781302044;ATF5_CREB3:-0.402764372598;KLF4:-0.407563828715;SPI1:-0.451356646796;POU2F1..3:-0.458284723496;FOXL1:-0.468340806172;DBP:-0.478807434904;HNF4A_NR2F1,2:-0.478940913047;CDC5L:-0.498249237012;IRF7:-0.502772410476;EVI1:-0.50958273181;RBPJ:-0.510058563889;NFE2L1:-0.525736668998;LEF1_TCF7_TCF7L1,2:-0.578054252657;GATA6:-0.583810194705;SREBF1,2:-0.592120686912;REST:-0.603180014977;SOX{8,9,10}:-0.626174347461;IRF1,2:-0.665357321959;TBP:-0.680643488145;EP300:-0.687373996342;BPTF:-0.696694622076;NKX2-1,4:-0.704233662976;NHLH1,2:-0.709540917631;E2F1..5:-0.732771359649;ZIC1..3:-0.747267379518;GTF2A1,2:-0.873086621016;ATF4:-0.885356735323;ATF2:-0.904118084957;FOXN1:-0.925186010099;ATF6:-0.934614442208;PAX2:-0.947489062026;BREu{core}:-0.970439268259;ZEB1:-1.01848256725;CREB1:-1.38484218297;SNAI1..3:-1.44036279934;POU1F1:-1.44513301822;PBX1:-1.46285804268;LMO2:-1.52740642587;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.69968442356;ELF1,2,4:-1.72969792715;FOX{I1,J2}:-1.88853326527;MYOD1:-2.14332949193;SP1:-2.1513025872;GZF1:-2.21940961075;XCPE1{core}:-2.2573092275;ARID5B:-2.2634863184;GFI1:-2.39729650816;ELK1,4_GABP{A,B1}:-2.57166987557;YY1:-2.62971892866;NFY{A,B,C}:-2.91701343635;NRF1:-3.15599195134;ZNF143:-3.69440626209;STAT1,3:-4.43734547117
 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:13003-139B6;search_select_hide=table117:13003-139B6
-|DRA_sample_Accession=CAGE@DRS008773
-|accession_numbers=DRX008910;DRR009784;DRZ001209;DRZ002592;CAGE
-|library_id=CNhs13409
 }}

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FF:13003-139B6: Difference between revisions

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Latest revision as of 18:48, 4 June 2020

CNhs13409

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0