FF:1548-44H5: Difference between revisions

Latest revision as of 19:08, 4 June 2020

Name:	pancreas, neonate N30
Species:	Mouse (Mus musculus)
Library ID:	CNhs11182
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	pancreas
dev stage	30 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005022

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11182		CAGE		DRX009065		DRR009939

Accession ID Mm9

Library id		BAM		CTSS
CNhs11182		DRZ001364		DRZ002747

Accession ID Mm10

Library id		BAM		CTSS
CNhs11182		DRZ012714		DRZ014097

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11182

0	0
1	0
10	0
100	0
1000	0
1001	-0.0233
1002	-0.0941
1003	-0.123
1004	0
1005	0
1006	-0.0539
1007	0.128
1008	0
1009	0.0481
101	-0.0247
1010	0
1011	-0.269
1012	0
1013	0.628
1014	-0.0874
1015	-0.294
1016	-0.286
1017	0
1018	0.0162
1019	0
102	0
1020	0
1021	0.243
1022	0.736
1023	0
1024	0
1025	-0.0611
1026	0
1027	-0.048
1028	0
1029	-0.148
103	-0.0317
1030	0
1031	-0.178
1032	0.134
1033	0
1034	1.235
1035	0
1036	-0.183
1037	0
1038	0.202
1039	0.267
104	0
1040	-0.11
1041	0.308

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11182

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.307
MA0003.1	MA0003.1	0.587
MA0004.1	MA0004.1	0.269
MA0006.1	MA0006.1	0.142
MA0007.1	MA0007.1	0.408
MA0009.1	MA0009.1	0.711
MA0014.1	MA0014.1	0.273
MA0017.1	MA0017.1	0.232
MA0018.2	MA0018.2	0.00566
MA0019.1	MA0019.1	0.754
MA0024.1	MA0024.1	0.00292
MA0025.1	MA0025.1	0.158
MA0027.1	MA0027.1	0.81
MA0028.1	MA0028.1	0.807
MA0029.1	MA0029.1	0.889
MA0030.1	MA0030.1	0.942
MA0031.1	MA0031.1	0.51
MA0035.2	MA0035.2	0.0919
MA0038.1	MA0038.1	0.343
MA0039.2	MA0039.2	0.0415
MA0040.1	MA0040.1	0.753
MA0041.1	MA0041.1	0.173
MA0042.1	MA0042.1	0.532
MA0043.1	MA0043.1	0.0645
MA0046.1	MA0046.1	1.31132e-8
MA0047.2	MA0047.2	2.22179e-4
MA0048.1	MA0048.1	0.838
MA0050.1	MA0050.1	0.564
MA0051.1	MA0051.1	0.409
MA0052.1	MA0052.1	0.00129
MA0055.1	MA0055.1	0.435
MA0057.1	MA0057.1	0.135
MA0058.1	MA0058.1	0.318
MA0059.1	MA0059.1	0.0105
MA0060.1	MA0060.1	7.5109e-4
MA0061.1	MA0061.1	0.815
MA0062.2	MA0062.2	0.902
MA0065.2	MA0065.2	0.0396
MA0066.1	MA0066.1	0.47
MA0067.1	MA0067.1	0.0688
MA0068.1	MA0068.1	0.165
MA0069.1	MA0069.1	0.552
MA0070.1	MA0070.1	0.807
MA0071.1	MA0071.1	0.204
MA0072.1	MA0072.1	0.0898
MA0073.1	MA0073.1	0.368
MA0074.1	MA0074.1	0.134
MA0076.1	MA0076.1	0.643
MA0077.1	MA0077.1	0.732
MA0078.1	MA0078.1	0.608
MA0079.2	MA0079.2	0.225
MA0080.2	MA0080.2	0.905
MA0081.1	MA0081.1	0.499
MA0083.1	MA0083.1	0.00411
MA0084.1	MA0084.1	0.42
MA0087.1	MA0087.1	0.112
MA0088.1	MA0088.1	0.104
MA0090.1	MA0090.1	0.0647
MA0091.1	MA0091.1	0.00164
MA0092.1	MA0092.1	0.19
MA0093.1	MA0093.1	0.264
MA0099.2	MA0099.2	0.853
MA0100.1	MA0100.1	0.0513
MA0101.1	MA0101.1	0.983
MA0102.2	MA0102.2	0.0779
MA0103.1	MA0103.1	5.97306e-6
MA0104.2	MA0104.2	0.337
MA0105.1	MA0105.1	0.854
MA0106.1	MA0106.1	0.135
MA0107.1	MA0107.1	0.438
MA0108.2	MA0108.2	0.134
MA0111.1	MA0111.1	0.706
MA0112.2	MA0112.2	6.03656e-4
MA0113.1	MA0113.1	0.857
MA0114.1	MA0114.1	0.201
MA0115.1	MA0115.1	0.802
MA0116.1	MA0116.1	0.62
MA0117.1	MA0117.1	0.383
MA0119.1	MA0119.1	0.63
MA0122.1	MA0122.1	0.83
MA0124.1	MA0124.1	0.356
MA0125.1	MA0125.1	0.377
MA0131.1	MA0131.1	0.751
MA0135.1	MA0135.1	0.49
MA0136.1	MA0136.1	0.11
MA0137.2	MA0137.2	0.0022
MA0138.2	MA0138.2	0.498
MA0139.1	MA0139.1	0.292
MA0140.1	MA0140.1	0.0199
MA0141.1	MA0141.1	0.0131
MA0142.1	MA0142.1	0.888
MA0143.1	MA0143.1	0.845
MA0144.1	MA0144.1	0.0181
MA0145.1	MA0145.1	0.0217
MA0146.1	MA0146.1	0.0508
MA0147.1	MA0147.1	0.117
MA0148.1	MA0148.1	2.54975e-5
MA0149.1	MA0149.1	0.0194
MA0150.1	MA0150.1	0.286
MA0152.1	MA0152.1	0.845
MA0153.1	MA0153.1	2.68906e-4
MA0154.1	MA0154.1	0.0332
MA0155.1	MA0155.1	0.376
MA0156.1	MA0156.1	0.868
MA0157.1	MA0157.1	0.132
MA0159.1	MA0159.1	0.0921
MA0160.1	MA0160.1	0.113
MA0162.1	MA0162.1	0.52
MA0163.1	MA0163.1	0.0659
MA0164.1	MA0164.1	0.43
MA0258.1	MA0258.1	0.0177
MA0259.1	MA0259.1	0.78

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11182

Novel motif	Logo	P-value
1	1	0.06
10	10	0.153
100	100	0.523
101	101	0.722
102	102	0.432
103	103	0.0428
104	104	0.436
105	105	0.802
106	106	0.0256
107	107	0.216
108	108	0.899
109	109	0.0556
11	11	0.0793
110	110	0.0788
111	111	0.0258
112	112	0.164
113	113	0.561
114	114	0.119
115	115	0.865
116	116	0.205
117	117	0.171
118	118	0.908
119	119	0.027
12	12	0.614
120	120	0.975
121	121	0.52
122	122	0.186
123	123	0.718
124	124	0.87
125	125	0.327
126	126	0.0324
127	127	0.44
128	128	0.0115
129	129	0.253
13	13	0.00918
130	130	0.9
131	131	0.35
132	132	0.871
133	133	0.0952
134	134	0.781
135	135	0.424
136	136	0.145
137	137	0.169
138	138	0.106
139	139	0.427
14	14	0.725
140	140	0.132
141	141	0.508
142	142	0.289
143	143	0.278
144	144	0.445
145	145	0.0393
146	146	0.399
147	147	0.526
148	148	0.221
149	149	0.191
15	15	0.278
150	150	0.298
151	151	0.42
152	152	0.00421
153	153	0.689
154	154	0.982
155	155	0.19
156	156	0.698
157	157	0.181
158	158	0.175
159	159	0.631
160	160	0.229
161	161	0.454
162	162	0.714
163	163	0.688
164	164	0.0546
165	165	0.0595
166	166	0.149
167	167	0.709
168	168	0.726
169	169	0.0328
17	17	0.0317
18	18	0.725
19	19	0.0893
2	2	0.4
20	20	0.833
21	21	0.842
22	22	0.314
23	23	0.525
24	24	0.101
25	25	0.862
26	26	0.0112
27	27	0.609
28	28	0.77
29	29	0.256
3	3	0.198
30	30	0.913
31	31	0.289
32	32	0.295
33	33	0.626
34	34	0.917
35	35	0.309
36	36	0.46
37	37	0.0602
38	38	0.48
39	39	0.437
4	4	0.13
40	40	0.682
41	41	0.515
42	42	0.194
43	43	0.386
44	44	0.36
45	45	0.716
46	46	0.104
47	47	0.368
48	48	0.251
49	49	0.215
5	5	0.269
50	50	0.715
51	51	0.607
52	52	0.292
53	53	0.833
54	54	0.735
55	55	0.0386
56	56	0.467
57	57	0.651
58	58	0.356
59	59	0.0337
6	6	0.9
60	60	0.103
61	61	0.254
62	62	0.278
63	63	0.101
64	64	0.442
65	65	0.152
66	66	0.253
67	67	0.856
68	68	0.886
69	69	0.226
7	7	0.129
70	70	0.0661
71	71	0.0137
72	72	0.341
73	73	0.00777
74	74	0.632
75	75	0.276
76	76	0.918
77	77	0.063
78	78	0.192
79	79	0.0535
8	8	0.0686
80	80	0.882
81	81	0.378
82	82	0.148
83	83	0.696
84	84	0.892
85	85	0.0342
86	86	0.11
87	87	0.0278
88	88	0.951
89	89	0.659
9	9	0.712
90	90	0.02
91	91	0.408
92	92	0.131
93	93	0.166
94	94	0.867
95	95	0.388
96	96	0.327
97	97	0.00766
98	98	0.777
99	99	0.673

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11182

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011255 mouse pancreas- neonate N30 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000310 (mouse neonate N30 sample)
0011255 (mouse pancreas- neonate N30 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002108,UBERON:0001264,UBERON:0002100,UBERON:0000160,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000077,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0002553,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0002323,UBERON:0005177,UBERON:0003104,UBERON:0000464,UBERON:0004458,UBERON:0001048,UBERON:0000925,UBERON:0006598,UBERON:0003886,UBERON:0003922,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0002114,UBERON:0005409,UBERON:0007026,UBERON:0001041,UBERON:0000949,UBERON:0009142,UBERON:0003923,UBERON:0006595,UBERON:0006603,UBERON:0001045,UBERON:0003924,UBERON:0003921
+|DRA_sample_Accession=CAGE@SAMD00005022
+|accession_numbers=CAGE;DRX009065;DRR009939;DRZ001364;DRZ002747;DRZ012714;DRZ014097
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000310,FF:0011255
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!3.12!1331.48!Rbpjl;;chr5:144951153..144951203,+!p1@Bhlha15!2.63!600.25!Bhlha15;;chr2:19367259..19367278,+!p1@Ptf1a!2.39!246.49!Ptf1a;;chr7:19608891..19608895,-!p1@Foxa3!1.79!77.35!Foxa3;;chr9:74709695..74709722,+!p1@Onecut1!1.74!53.63!Onecut1;;chr17:27865882..27865901,-!p1@Spdef!1.60!39.19!Spdef;;chr9:106362954..106362977,+!p6@Pcbp4!1.53!33.00!Pcbp4;;chr10:88969376..88969395,-!p1@Nr1h4!1.43!25.78!Nr1h4;;chr2:163332558..163332596,+!p2@Hnf4a!1.39!23.72!Hnf4a;;chr14:63864056..63864102,-!p1@Gata4!1.38!39.19!Gata4;;chr1:138857076..138857105,-!p1@Nr5a2!1.37!22.69!Nr5a2;;chr2:147871627..147871641,-!p1@Foxa2!1.33!20.63!Foxa2;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!1.31!19.60!Ppard;;chr11:83664365..83664383,+!p1@Hnf1b!1.31!19.60!Hnf1b;;chr1:138857112..138857130,-!p7@Nr5a2!1.29!18.56!Nr5a2;;chr4:133109285..133109308,+!p1@Nr0b2!1.27!17.53!Nr0b2;;chr2:103143336..103143367,-!p1@Ehf!1.25!26.82!Ehf;;chr1:138857048..138857071,-!p2@Nr5a2!1.24!16.50!Nr5a2;;chr5:125538737..125538781,-!p2@Ncor2!1.18!50.54!Ncor2;;chr6:90412582..90412601,+!p1@Klf15!1.15!61.88!Klf15;;chr14:63890491..63890516,-!p2@Gata4!1.09!11.34!Gata4;;chr11:5420655..5420659,+!p3@Xbp1!1.09!11.34!Xbp1;;chr11:5420954..5420969,+!p2@Xbp1!1.08!139.23!Xbp1;;chr5:148081686..148081715,+!p1@Pdx1!1.05!10.31!Pdx1;;chr2:115888250..115888298,-!p10@Meis2!1.04!12.38!Meis2;;chr6:72849280..72849297,-!p6@Kcmf1!1.02!18.56!Kcmf1;;chr7:52471143..52471186,+!p1@Tead2!1.00!97.98!Tead2;;chr5:104121453..104121479,+!p4@Aff1!1.00!42.29!Aff1;;chr6:90412608..90412630,+!p2@Klf15!0.99!18.56!Klf15;;chr18:7004715..7004731,-!p1@Mkx!0.98!20.63!Mkx;;chr14:63890545..63890560,-!p5@Gata4!0.97!8.25!Gata4;;chr14:63890519..63890539,-!p3@Gata4!0.97!8.25!Gata4;;chr2:79296783..79296801,-!p1@Neurod1!0.97!8.25!Neurod1;;chr11:121380640..121380655,-!p1@Zfp750!0.95!13.41!Zfp750;;chr8:124806048..124806094,+!p1@Zfpm1!0.91!68.07!Zfpm1;;chr1:137155026..137155042,-!p1@Elf3!0.91!43.32!Elf3;;chr7:51787434..51787448,-!p1@Spib!0.91!10.31!Spib;;chr2:103143315..103143328,-!p2@Ehf!0.91!7.22!Ehf;;chr1:138846079..138846103,-!p6@Nr5a2!0.91!7.22!Nr5a2;;chr5:135582751..135582788,+!p1@Mlxipl!0.90!28.88!Mlxipl;;chr11:121380594..121380609,-!p2@Zfp750!0.90!12.38!Zfp750;;chr7:52071956..52071978,-!p1@Atf5!0.88!226.90!Atf5;;chr5:148081667..148081678,+!p3@Pdx1!0.86!6.19!Pdx1;;chr17:28409136..28409150,+!p3@Ppard!0.86!6.19!Ppard;;chr18:74375772..74375799,+!p2@Cxxc1!0.85!18.56!Cxxc1;;chr3:30408674..30408716,-!p2@Mecom!0.85!10.31!Mecom;;chr7:52472041..52472065,+!p2@Tead2!0.85!7.22!Tead2;;chr19:10315179..10315241,-!p1@Gm98!0.84!66.01!Gm98;;chr12:113916993..113917009,+!p2@Zbtb42!0.83!10.31!Zbtb42;;chr11:121380611..121380625,-!p3@Zfp750!0.83!7.22!Zfp750;;chr1:138846047..138846074,-!p5@Nr5a2!0.82!6.19!Nr5a2;;chr2:91864661..91864686,-!p1@Creb3l1!0.81!127.89!Creb3l1;;chr6:146744595..146744613,+!p2@Arntl2!0.80!9.28!Arntl2;;chr1:194979315..194979359,+!p1@Irf6!0.79!34.03!Irf6;;chr18:36441119..36441158,+!p2@Pura!0.79!13.41!Pura;;chr5:115421065..115421088,-!p1@Hnf1a!0.79!5.16!Hnf1a;;chr5:148081722..148081744,+!p2@Pdx1!0.79!5.16!Pdx1;;chr9:96096707..96096772,+!p1@Tfdp2!0.78!83.54!Tfdp2;;chr12:113917014..113917034,+!p1@Zbtb42!0.78!9.28!Zbtb42;;chr2:115890469..115890485,-!p7@Meis2!0.78!8.25!Meis2;;chr8:79423144..79423178,+!p3@Nr3c2!0.78!7.22!Nr3c2;;chr4:154010918..154010931,-!p1@Prdm16!0.77!15.47!Prdm16;;chr14:22807107..22807119,-!p2@Zfp503!0.76!22.69!Zfp503;;chr3:30408384..30408431,-!p4@Mecom!0.76!6.19!Mecom;;chr7:148513409..148513455,-!p2@Deaf1!0.75!23.72!Deaf1;;chr9:96620459..96620478,-!p9@Zbtb38!0.75!5.16!Zbtb38;;chr11:5420973..5420992,+!p1@Xbp1!0.74!524.96!Xbp1;;chr9:48644429..48644462,-!p3@Zbtb16!0.74!9.28!Zbtb16;;chr4:119486912..119486954,+!p3@Hivep3!0.74!8.25!Hivep3;;chr1:172797892..172797915,-!p1@Atf6!0.72!133.04!Atf6;;chr18:11052642..11052659,+!p1@Gata6!0.72!23.72!Gata6;;chr14:22808697..22808715,-!p4@Zfp503!0.72!5.16!Zfp503;;chr9:48644037..48644067,-!p2@Zbtb16!0.71!11.34!Zbtb16;;chr18:74375754..74375763,+!p4@Cxxc1!0.71!5.16!Cxxc1;;chr16:43235969..43235989,+!p20@Zbtb20!0.71!4.13!Zbtb20;;chr2:103264213..103264233,+!p1@Elf5!0.71!4.13!Elf5;;chr1:138846117..138846129,-!p8@Nr5a2!0.71!4.13!Nr5a2;;chr5:115420882..115420896,-!p3@Hnf1a!0.71!4.13!Hnf1a;;chr8:87425854..87425891,+!p1@Klf1!0.71!4.13!Klf1;;chr9:74709682..74709691,+!p3@Onecut1!0.71!4.13!Onecut1;;chr15:61817095..61817111,+!p1@Myc!0.70!273.31!Myc;;chr8:125897750..125897758,+!p2@Tcf25!0.70!30.94!Tcf25;;chr15:37162796..37162828,+!p1@Grhl2!0.70!7.22!Grhl2;;chr14:22807216..22807231,-!p3@Zfp503!0.70!7.22!Zfp503;;chr19:23215509..23215523,+!p4@Klf9!0.69!5.16!Klf9;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.68!6.19!Mesp2;;chr11:116196664..116196679,-!p1@Foxj1!0.68!6.19!Foxj1;;chr2:168415815..168415872,-!p1@Nfatc2!0.67!22.69!Nfatc2;;chr3:30408603..30408668,-!p1@Mecom!0.67!9.28!Mecom;;chr14:22806778..22806795,-!p5@Zfp503!0.67!4.13!Zfp503;;chr3:94176733..94176794,+!p1@Rorc!0.66!31.97!Rorc;;chr1:138846009..138846038,-!p3@Nr5a2!0.66!4.13!Nr5a2;;chr8:107793737..107793757,+!p2@Hsf4!0.66!4.13!Hsf4;;chr6:72849716..72849805,-!p1@Kcmf1!0.65!50.54!Kcmf1;;chr15:36937113..36937127,-!p3@Gm10193,p3@Zfp706!0.65!39.19!Zfp706;;chr5:34530293..34530318,-!p2@Mxd4!0.65!22.69!Mxd4;;chr3:89197057..89197114,-!p1@Zbtb7b!0.65!13.41!Zbtb7b;;chr6:15135456..15135520,+!p3@Foxp2!0.65!8.25!Foxp2;;chr19:23215673..23215753,+!p1@Klf9!0.64!57.76!Klf9;;chr11:98605517..98605539,+!p5@Thra!0.64!5.16!Thra;;chr6:118429255..118429336,-!p1@Zfp9!0.63!62.91!Zfp9;;chr14:22807083..22807104,-!p1@Zfp503!0.62!67.04!Zfp503;;chr18:80904854..80904919,-!p2@Nfatc1!0.62!45.38!Nfatc1;;chr4:154010409..154010466,-!p2@Prdm16!0.62!8.25!Prdm16;;chr9:69137672..69137702,+!p2@Rora!0.61!15.47!Rora;;chr7:97591412..97591431,+!p2@Crebzf!0.61!9.28!Crebzf;;chr2:151969288..151969294,+!p1@Tcf15!0.61!5.16!Tcf15;;chr1:6720216..6720232,+!p1@St18!0.61!3.09!St18;;chr2:147872074..147872079,-!p4@Foxa2!0.61!3.09!Foxa2;;chr14:63864337..63864381,-!p6@Gata4!0.61!3.09!Gata4;;chr14:63890660..63890687,-!p7@Gata4!0.61!3.09!Gata4;;chr11:83666422..83666446,+!p4@Hnf1b!0.61!3.09!Hnf1b;;chr11:96829969..96829987,-!p2@Sp2!0.61!3.09!Sp2;;chr11:83664334..83664353,+!p2@Hnf1b!0.61!3.09!Hnf1b;;chr9:74709664..74709671,+!p6@Onecut1!0.61!3.09!Onecut1;;chr17:14011485..14011507,+!p2@Mllt4!0.61!3.09!Mllt4;;chr4:154010882..154010889,-!p10@Prdm16!0.61!3.09!Prdm16;;chr6:14851287..14851342,+!p1@Foxp2!0.60!11.34!Foxp2;;chr3:32264530..32264544,-!p2@Zmat3!0.60!5.16!Zmat3;;chr6:134780337..134780355,+!p3@Crebl2!0.60!4.13!Crebl2;;chr1:138845748..138845766,-!p4@Nr5a2!0.60!4.13!Nr5a2;;chr1:69732511..69732540,-!p2@Ikzf2!0.60!4.13!Ikzf2;;chr2:160698288..160698358,-!p3@Zhx3!0.59!10.31!Zhx3;;chr6:90412556..90412581,+!p3@Klf15!0.59!7.22!Klf15;;chr1:194979361..194979373,+!p2@Irf6!0.59!4.13!Irf6;;chr5:34530277..34530292,-!p3@Mxd4!0.58!8.25!Mxd4;;chr5:147760339..147760350,+!p3@Gtf3a!0.57!9.28!Gtf3a;;chr12:25257141..25257173,+!p1@Grhl1!0.56!6.19!Grhl1;;chr14:14845141..14845207,+!p1@Atxn7!0.55!22.69!Atxn7;;chr10:80600749..80600766,+!p2@Zbtb7a!0.55!16.50!Zbtb7a;;chr1:172797864..172797873,-!p2@Atf6!0.55!8.25!Atf6;;chr6:14851440..14851497,+!p2@Foxp2!0.55!7.22!Foxp2;;chr8:73905892..73905903,-!p5@Nr2f6!0.55!3.09!Nr2f6;;chr4:122911056..122911065,+!p2@Heyl!0.54!4.13!Heyl;;chr19:28754692..28754757,-!p1@Glis3!0.53!12.38!Glis3;;chr18:11052606..11052633,+!p4@Gata6!0.53!7.22!Gata6;;chr5:3647720..3647733,-!p3@Gatad1!0.53!5.16!Gatad1;;chr2:27532817..27532828,+!p6@Rxra!0.53!4.13!Rxra;;chr19:23215469..23215494,+!p2@Klf9!0.53!4.13!Klf9;;chr13:30841099..30841116,+!p1@Irf4!0.53!4.13!Irf4;;chr6:15135639..15135655,+!p9@Foxp2!0.53!3.09!Foxp2;;chr9:48644013..48644027,-!p5@Zbtb16!0.53!3.09!Zbtb16;;chr19:5560600..5560617,-!p1@Ovol1!0.53!3.09!Ovol1;;chr8:125897678..125897746,+!p1@Tcf25!0.52!613.66!Tcf25;;chr11:53164378..53164392,+!p2@Aff4!0.52!25.78!Aff4;;chr18:74376000..74376061,+!p3@Cxxc1!0.52!10.31!Cxxc1;;chr11:53164533..53164548,+!p4@Aff4!0.52!8.25!Aff4;;chr1:172797876..172797887,-!p5@Atf6!0.52!6.19!Atf6;;chr2:56976543..56976558,-!p2@Nr4a2!0.52!6.19!Nr4a2;;chr2:104966766..104966786,+!p1@Wt1!0.52!4.13!Wt1;;chr12:100802129..100802145,-!p4@Foxn3!0.52!4.13!Foxn3;;chr10:107769219..107769226,+!p5@Pawr!0.52!3.09!Pawr;;chr9:69137709..69137714,+!p7@Rora!0.52!3.09!Rora;;chr8:124806017..124806040,+!p2@Zfpm1!0.51!31.97!Zfpm1;;chr6:47785649..47785724,+!p1@Zfp398!0.51!23.72!Zfp398;;chr2:38781916..38781974,-!p1@Nr6a1!0.51!8.25!Nr6a1;;chr2:34227446..34227511,-!p1@Pbx3!0.51!6.19!Pbx3;;chr4:61869573..61869595,-!p2@Zfp37!0.51!3.09!Zfp37;;chr2:18314363..18314465,-!p1@Dnajc1!0.50!71.16!Dnajc1;;chr8:87225329..87225396,+!p1@Lyl1!0.50!10.31!Lyl1;;chr16:43363190..43363242,+!p2@Zbtb20!0.50!8.25!Zbtb20;;chr19:23216166..23216191,+!p6@Klf9!0.50!3.09!Klf9;;chr15:36937029..36937108,-!p1@Gm10193,p1@Zfp706!0.49!343.44!Zfp706;;chr5:31262609..31262693,-!p1@Preb!0.49!143.36!Preb;;chr7:35904304..35904320,+!p1@Cebpa!0.49!56.72!Cebpa;;chr5:76733756..76733815,-!p1@Clock!0.49!43.32!Clock;;chr15:81633165..81633188,+!p2@Tef!0.49!22.69!Tef;;chr10:114821444..114821491,-!p1@Thap2!0.49!21.66!Thap2;;chr8:87643578..87643593,-!p1@Zfp791!0.49!5.16!Zfp791;;chr3:89197216..89197258,-!p3@Zbtb7b!0.49!5.16!Zbtb7b;;chr3:30039329..30039355,-!p5@Mecom!0.49!2.06!Mecom;;chr16:43236037..43236050,+!p35@Zbtb20!0.49!2.06!Zbtb20;;chr17:28409059..28409076,+!p6@Ppard!0.49!2.06!Ppard;;chr19:43686789..43686811,+!p1@Nkx2-3!0.49!2.06!Nkx2-3;;chr2:104966874..104966907,+!p2@Wt1!0.49!2.06!Wt1;;chr2:104967357..104967379,+!p9@Wt1!0.49!2.06!Wt1;;chr2:104966933..104966966,+!p3@Wt1!0.49!2.06!Wt1;;chr6:38097380..38097407,-!p6@D630045J12Rik!0.49!2.06!D630045J12Rik;;chr5:144951136..144951139,+!p2@Bhlha15!0.49!2.06!Bhlha15;;chr6:115311308..115311317,+!p10@Pparg!0.49!2.06!Pparg;;chr9:74714303..74714318,+!p2@Onecut1!0.49!2.06!Onecut1;;chr15:102839948..102839975,+!p3@Hoxc6!0.49!2.06!Hoxc6;;chr14:63890459..63890484,-!p4@Gata4!0.49!2.06!Gata4;;chr13:48758276..48758291,+!p1@Barx1!0.49!2.06!Barx1;;chr13:48758358..48758415,+!p2@Barx1!0.49!2.06!Barx1;;chr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1.03!Nr4a2;;chr1:179372543..179372557,+!p9@Zfp238!0.31!1.03!Zfp238;;chr2:147012125..147012149,-!p1@Nkx2-2!0.31!1.03!Nkx2-2;;chr1:120524563..120524591,+!p2@Tfcp2l1!0.31!1.03!Tfcp2l1;;chr2:147872790..147872821,-!p2@Foxa2!0.31!1.03!Foxa2;;chr2:147871948..147871977,-!p3@Foxa2!0.31!1.03!Foxa2;;chr1:191994700..191994711,-!p4@Prox1!0.31!1.03!Prox1;;chr2:115891770..115891799,-!p25@Meis2!0.31!1.03!Meis2;;chr15:37163041..37163061,+!p5@Grhl2!0.31!1.03!Grhl2;;chr15:25914088..25914091,+!p6@Zfp622!0.31!1.03!Zfp622;;chr15:103082088..103082136,-!p2@Nfe2!0.31!1.03!Nfe2;;chr13:48757894..48757908,+!p5@Barx1!0.31!1.03!Barx1;;chr12:36219283..36219298,-!p2@Ahr!0.31!1.03!Ahr;;chr15:102839976..102839989,+!p4@Hoxc6!0.31!1.03!Hoxc6;;chr6:29476684..29476685,+!p6@Irf5!0.31!1.03!Irf5;;chr6:29479277..29479296,+!p2@Irf5!0.31!1.03!Irf5;;chr6:90415250..90415271,+!p4@Klf15!0.31!1.03!Klf15;;chr6:90416275..90416286,+!p9@Klf15!0.31!1.03!Klf15;;chr7:122989632..122989668,-!p2@Sox6!0.31!1.03!Sox6;;chr6:97879817..97879857,+!p2@Mitf!0.31!1.03!Mitf;;chr7:122989594..122989626,-!p1@Sox6!0.31!1.03!Sox6;;chr6:72185396..72185413,-!p6@Atoh8!0.31!1.03!Atoh8;;chr6:14851403..14851422,+!p8@Foxp2!0.31!1.03!Foxp2;;chr5:98609885..98609900,+!p1@Prdm8!0.31!1.03!Prdm8;;chr7:146768691..146768707,-!p1@Nkx6-2!0.31!1.03!Nkx6-2;;chr5:120120834..120120845,+!p8@Tbx3!0.31!1.03!Tbx3;;chr5:115421126..115421137,-!p4@Hnf1a!0.31!1.03!Hnf1a;;chr5:138526401..138526410,+!p3@Zkscan1!0.31!1.03!Zkscan1;;chr6:115372016..115372022,+!p13@Pparg!0.31!1.03!Pparg;;chr2:75543089..75543122,-!p3@Nfe2l2!0.31!1.03!Nfe2l2;;chr3:3508024..3508069,+!p2@Hnf4g!0.31!1.03!Hnf4g;;chr4:134676555..134676575,+!p2@Runx3!0.31!1.03!Runx3;;chr4:63064279..63064293,-!p7@Akna!0.31!1.03!Akna;;chr4:133312435..133312454,-!p22@Arid1a!0.31!1.03!Arid1a;;chr4:119487109..119487131,+!p4@Hivep3!0.31!1.03!Hivep3;;chr2:74543202..74543213,+!p3@Hoxd8!0.31!1.03!Hoxd8;;chr4:44723559..44723593,-!p1@Pax5!0.31!1.03!Pax5;;chr4:44723520..44723544,-!p2@Pax5!0.31!1.03!Pax5;;chr4:32325928..32325939,+!p11@Bach2!0.31!1.03!Bach2;;chr2:90936867..90936874,+!p7@Sfpi1!0.31!1.03!Sfpi1;;chr3:135257370..135257389,-!p9@Nfkb1!0.31!1.03!Nfkb1;;chr4:13678514..13678539,+!p14@Runx1t1!0.31!1.03!Runx1t1;;chr2:93482426..93482434,+!p3@Alx4!0.31!1.03!Alx4;;chr11:52096732..52096741,-!p6@Tcf7!0.31!1.03!Tcf7;;chr11:98407234..98407259,-!p2@Ikzf3!0.31!1.03!Ikzf3;;chr10:22451680..22451722,-!p3@Tbpl1!0.31!1.03!Tbpl1;;chr11:100721492..100721499,+!p5@Stat5a!0.31!1.03!Stat5a;;chr11:96880133..96880141,+!p2@Sp6!0.31!1.03!Sp6;;chr11:100553754..100553787,-!p1@Zfp385c!0.31!1.03!Zfp385c;;chr10:50614546..50614568,+!p@chr10:50614546..50614568,+!0.31!1.03!Sim1;;chr11:23671279..23671293,-!p8@Rel!0.31!1.03!Rel;;chr10:5636354..5636373,-!p2@Esr1!0.31!1.03!Esr1;;chr11:98826125..98826141,+!p12@Rara!0.31!1.03!Rara;;chr11:23978270..23978290,+!p9@Bcl11a!0.31!1.03!Bcl11a;;chr12:105711446..105711464,-!p1@Gsc!0.31!1.03!Gsc;;chr10:79884592..79884621,-!p5@Tcf3!0.31!1.03!Tcf3;;chr9:21992581..21992593,+!p1@Zfp872!0.31!1.03!Zfp872;;chr9:74714281..74714296,+!p5@Onecut1!0.31!1.03!Onecut1;;chr9:106362981..106362988,+!p12@Pcbp4!0.31!1.03!Pcbp4;;chr9:87626109..87626120,-!p3@Tbx18!0.31!1.03!Tbx18;;chr7:52072324..52072336,-!p4@Atf5!0.31!1.03!Atf5;;chr9:113840426..113840435,+!p8@Ubp1!0.31!1.03!Ubp1;;chrX:108009734..108009752,+!p2@Pou3f4!0.31!1.03!Pou3f4;;chr8:86590801..86590818,+!p2@Rfx1!0.31!1.03!Rfx1;;chr18:69681228..69681237,+!p44@Tcf4!0.31!1.03!Tcf4;;chr18:69681575..69681579,+!p41@Tcf4!0.31!1.03!Tcf4;;chr16:38294860..38294924,-!p1@Nr1i2!0.31!1.03!Nr1i2;;chr16:43364103..43364130,+!p30@Zbtb20!0.31!1.03!Zbtb20;;chr18:3309876..3309914,-!p9@Crem!0.31!1.03!Crem;;chr19:46380433..46380451,+!p5@Nfkb2!0.31!1.03!Nfkb2;;chr15:81606702..81606709,+!p7@Zc3h7b!0.31!1.03!Zc3h7b;;chr15:76701495..76701535,-!p3@Zfp251!0.31!1.03!Zfp251;;chr6:37392095..37392154,-!p1@Creb3l2!0.30!56.72!Creb3l2;;chr16:55822241..55822258,-!p1@Nfkbiz!0.30!55.69!Nfkbiz;;chr15:100058266..100058287,+!p1@Atf1!0.30!27.85!Atf1;;chr11:16908650..16908690,-!p1@Plek!0.30!10.31!Plek;;chr5:76733981..76734018,-!p3@Clock!0.30!3.09!Clock;;chr11:53164556..53164567,+!p5@Aff4!0.30!2.06!Aff4;;chr19:23216132..23216157,+!p3@Klf9!0.30!2.06!Klf9;;chr12:16817785..16817796,+!p2@E2f6!0.30!2.06!E2f6;;chr11:5761889..5761969,+!p1@Aebp1!0.29!74.26!Aebp1;;chr12:110031495..110031585,+!p1@Yy1!0.29!45.38!Yy1;;chr9:113840256..113840306,+!p1@Ubp1!0.29!37.13!Ubp1;;chr8:3493135..3493212,+!p1@Zfp358!0.29!28.88!Zfp358;;chr16:84835605..84835666,+!p1@Gabpa!0.29!27.85!Gabpa;;chr17:24806675..24806697,+!p2@Zfp598!0.29!8.25!Zfp598;;chr2:152758901..152758925,-!p1@Foxs1!0.29!7.22!Foxs1;;chr17:15701286..15701323,-!p1@Prdm9!0.29!6.19!Prdm9;;chr13:37917925..37917950,+!p4@Rreb1!0.29!6.19!Rreb1;;chr2:181100223..181100237,+!p4@Zgpat!0.29!4.13!Zgpat;;chr10:114821393..114821431,-!p5@Thap2!0.29!4.13!Thap2;;chr15:98126545..98126588,-!p1@Zfp641!0.29!3.09!Zfp641;;chr6:140572352..140572382,+!p3@Aebp2!0.29!3.09!Aebp2;;chr2:126501253..126501268,-!p3@Gabpb1!0.29!3.09!Gabpb1;;chr17:71200415..71200427,-!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+|ffid_belonging_in_development=FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 38: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011255
 |is_obsolete=
+|library_id=CNhs11182
+|library_id_phase_based=2:CNhs11182
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1548
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1548
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N30.CNhs11182.1548-44H5.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N30.CNhs11182.1548-44H5.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N30.CNhs11182.1548-44H5.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N30.CNhs11182.1548-44H5.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520neonate%2520N30.CNhs11182.1548-44H5.mm9.nobarcode.rdna.fa.gz
 |name=pancreas, neonate N30
 |namespace=FANTOM5
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11182,LSID746,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.27915036320286,0,0,0,0,0,0.066130800554661,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0.307785919889371,0,0,2.02611737705376,0,0,0,0,0,0,0.0537320788265062,0,0,0,0,0,-0.0554297655511405,-0.0408035844752772,0.00638775265012437,-0.372056495327289,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,0.420100451633668,0,0,0,0,0,0,0,0,0,0,-0.117389802908326,-0.00286473745001542,-0.158091042771083,-0.0484934614802503,0,0,0,0.0680108709698444,0,0,0,0.100958681945302,0.672031837461961,-0.0788315948399074,0,0,0,0,0,0,0.664150587967436,0.925619572622186,0.693662381532318,0,0,0,0,0
 |rna_box=44
 |rna_catalog_number=
@@ Line 58: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 78: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1548-44H5;search_select_hide=table117:1548-44H5
 }}

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FF:1548-44H5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:08, 4 June 2020

CNhs11182

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0