FF:356-43E3: Difference between revisions

Latest revision as of 19:10, 4 June 2020

Name:	stomach, embryo E12
Species:	Mouse (Mus musculus)
Library ID:	CNhs10588
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	stomach
dev stage	12 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005153

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10588		CAGE		DRX009091		DRR009965

Accession ID Mm9

Library id		BAM		CTSS
CNhs10588		DRZ001390		DRZ002773

Accession ID Mm10

Library id		BAM		CTSS
CNhs10588		DRZ012740		DRZ014123

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10588

0	0
1	0
10	0
100	0
1000	-0.0119
1001	-0.0668
1002	0.481
1003	-0.132
1004	0
1005	-0.136
1006	-0.00645
1007	0.17
1008	0
1009	0
101	0.14
1010	0
1011	0
1012	0
1013	-0.217
1014	0.343
1015	0.406
1016	0.315
1017	0
1018	0
1019	0
102	0
1020	0
1021	0.0151
1022	-0.124
1023	0
1024	-0.0173
1025	0.665
1026	0
1027	0.0638
1028	0
1029	-0.0838
103	0
1030	0
1031	0.285
1032	-0.0606
1033	0.0441
1034	0
1035	0
1036	0.164
1037	0
1038	0.0106
1039	-0.18
104	0
1040	0.161
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10588

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00101
MA0003.1	MA0003.1	0.251
MA0004.1	MA0004.1	0.678
MA0006.1	MA0006.1	0.362
MA0007.1	MA0007.1	0.358
MA0009.1	MA0009.1	0.606
MA0014.1	MA0014.1	0.418
MA0017.1	MA0017.1	3.79694e-4
MA0018.2	MA0018.2	0.379
MA0019.1	MA0019.1	0.791
MA0024.1	MA0024.1	5.09002e-6
MA0025.1	MA0025.1	0.0898
MA0027.1	MA0027.1	0.0423
MA0028.1	MA0028.1	0.0605
MA0029.1	MA0029.1	0.515
MA0030.1	MA0030.1	0.669
MA0031.1	MA0031.1	0.374
MA0035.2	MA0035.2	0.275
MA0038.1	MA0038.1	0.00823
MA0039.2	MA0039.2	0.461
MA0040.1	MA0040.1	0.764
MA0041.1	MA0041.1	0.337
MA0042.1	MA0042.1	0.653
MA0043.1	MA0043.1	0.0679
MA0046.1	MA0046.1	0.0536
MA0047.2	MA0047.2	0.725
MA0048.1	MA0048.1	0.238
MA0050.1	MA0050.1	1.15441e-6
MA0051.1	MA0051.1	3.75459e-5
MA0052.1	MA0052.1	8.6983e-6
MA0055.1	MA0055.1	0.0419
MA0057.1	MA0057.1	0.0891
MA0058.1	MA0058.1	0.494
MA0059.1	MA0059.1	0.692
MA0060.1	MA0060.1	6.80594e-18
MA0061.1	MA0061.1	0.0973
MA0062.2	MA0062.2	0.12
MA0065.2	MA0065.2	0.00109
MA0066.1	MA0066.1	0.0795
MA0067.1	MA0067.1	0.429
MA0068.1	MA0068.1	0.613
MA0069.1	MA0069.1	0.946
MA0070.1	MA0070.1	0.366
MA0071.1	MA0071.1	0.111
MA0072.1	MA0072.1	0.158
MA0073.1	MA0073.1	0.979
MA0074.1	MA0074.1	0.764
MA0076.1	MA0076.1	0.0379
MA0077.1	MA0077.1	0.0281
MA0078.1	MA0078.1	0.572
MA0079.2	MA0079.2	0.552
MA0080.2	MA0080.2	9.4604e-7
MA0081.1	MA0081.1	0.646
MA0083.1	MA0083.1	0.197
MA0084.1	MA0084.1	0.383
MA0087.1	MA0087.1	0.936
MA0088.1	MA0088.1	0.98
MA0090.1	MA0090.1	0.533
MA0091.1	MA0091.1	0.714
MA0092.1	MA0092.1	0.433
MA0093.1	MA0093.1	0.624
MA0099.2	MA0099.2	4.92676e-4
MA0100.1	MA0100.1	0.592
MA0101.1	MA0101.1	0.635
MA0102.2	MA0102.2	0.61
MA0103.1	MA0103.1	0.0141
MA0104.2	MA0104.2	0.233
MA0105.1	MA0105.1	0.00769
MA0106.1	MA0106.1	0.193
MA0107.1	MA0107.1	0.291
MA0108.2	MA0108.2	0.0456
MA0111.1	MA0111.1	0.568
MA0112.2	MA0112.2	3.30863e-6
MA0113.1	MA0113.1	0.817
MA0114.1	MA0114.1	0.00281
MA0115.1	MA0115.1	0.0534
MA0116.1	MA0116.1	0.0093
MA0117.1	MA0117.1	0.101
MA0119.1	MA0119.1	0.012
MA0122.1	MA0122.1	0.929
MA0124.1	MA0124.1	0.757
MA0125.1	MA0125.1	0.0499
MA0131.1	MA0131.1	0.179
MA0135.1	MA0135.1	0.203
MA0136.1	MA0136.1	0.036
MA0137.2	MA0137.2	0.346
MA0138.2	MA0138.2	0.0019
MA0139.1	MA0139.1	0.282
MA0140.1	MA0140.1	0.337
MA0141.1	MA0141.1	0.00162
MA0142.1	MA0142.1	0.754
MA0143.1	MA0143.1	0.0155
MA0144.1	MA0144.1	0.293
MA0145.1	MA0145.1	0.0221
MA0146.1	MA0146.1	0.853
MA0147.1	MA0147.1	0.371
MA0148.1	MA0148.1	0.123
MA0149.1	MA0149.1	0.0259
MA0150.1	MA0150.1	0.00348
MA0152.1	MA0152.1	0.755
MA0153.1	MA0153.1	0.599
MA0154.1	MA0154.1	0.00554
MA0155.1	MA0155.1	0.952
MA0156.1	MA0156.1	0.811
MA0157.1	MA0157.1	0.3
MA0159.1	MA0159.1	0.0231
MA0160.1	MA0160.1	0.0423
MA0162.1	MA0162.1	0.662
MA0163.1	MA0163.1	0.0876
MA0164.1	MA0164.1	0.691
MA0258.1	MA0258.1	2.91149e-4
MA0259.1	MA0259.1	0.573

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10588

Novel motif	Logo	P-value
1	1	0.0661
10	10	0.341
100	100	0.939
101	101	0.47
102	102	0.754
103	103	0.0691
104	104	0.901
105	105	0.276
106	106	0.00974
107	107	0.0517
108	108	0.96
109	109	0.211
11	11	0.137
110	110	0.198
111	111	0.091
112	112	0.0843
113	113	0.424
114	114	0.0138
115	115	0.701
116	116	0.62
117	117	0.419
118	118	0.806
119	119	0.0489
12	12	0.98
120	120	0.806
121	121	0.706
122	122	0.936
123	123	0.107
124	124	0.368
125	125	0.387
126	126	0.733
127	127	0.0884
128	128	0.0272
129	129	0.0315
13	13	0.441
130	130	0.589
131	131	0.179
132	132	0.646
133	133	0.493
134	134	0.522
135	135	0.943
136	136	0.408
137	137	0.679
138	138	0.728
139	139	0.00441
14	14	0.333
140	140	0.059
141	141	0.281
142	142	0.327
143	143	0.452
144	144	0.692
145	145	0.51
146	146	0.503
147	147	0.561
148	148	0.224
149	149	0.206
15	15	0.0932
150	150	0.47
151	151	0.143
152	152	0.21
153	153	0.132
154	154	0.367
155	155	0.907
156	156	0.0158
157	157	0.846
158	158	0.35
159	159	0.0806
160	160	0.519
161	161	0.667
162	162	0.612
163	163	0.213
164	164	0.445
165	165	0.144
166	166	0.679
167	167	0.936
168	168	0.315
169	169	0.00487
17	17	0.044
18	18	0.334
19	19	0.21
2	2	0.629
20	20	0.781
21	21	0.962
22	22	0.312
23	23	0.0503
24	24	0.677
25	25	0.335
26	26	0.352
27	27	0.324
28	28	0.291
29	29	0.544
3	3	0.233
30	30	0.88
31	31	0.291
32	32	0.304
33	33	0.809
34	34	0.865
35	35	0.257
36	36	0.489
37	37	0.0915
38	38	0.435
39	39	0.882
4	4	0.613
40	40	0.659
41	41	0.601
42	42	0.538
43	43	0.14
44	44	0.101
45	45	0.634
46	46	0.231
47	47	0.138
48	48	0.195
49	49	0.108
5	5	0.144
50	50	0.894
51	51	0.54
52	52	0.329
53	53	0.598
54	54	0.43
55	55	0.969
56	56	0.36
57	57	0.436
58	58	0.248
59	59	0.0583
6	6	0.513
60	60	0.143
61	61	0.978
62	62	0.0785
63	63	0.135
64	64	0.544
65	65	0.157
66	66	0.404
67	67	0.519
68	68	0.192
69	69	0.278
7	7	0.319
70	70	0.0011
71	71	0.298
72	72	0.562
73	73	0.206
74	74	0.223
75	75	0.267
76	76	0.77
77	77	0.228
78	78	0.258
79	79	0.287
8	8	0.149
80	80	0.251
81	81	0.298
82	82	0.0957
83	83	0.142
84	84	0.882
85	85	0.00325
86	86	0.56
87	87	0.663
88	88	0.838
89	89	0.177
9	9	0.498
90	90	0.0465
91	91	0.175
92	92	0.083
93	93	0.981
94	94	0.166
95	95	0.316
96	96	0.209
97	97	0.908
98	98	0.264
99	99	0.77

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10588

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011321 mouse stomach- embryo E12 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000945 (stomach)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000295 (mouse embryonic day 12 sample)
0011321 (mouse stomach- embryo E12 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005153
+|accession_numbers=CAGE;DRX009091;DRR009965;DRZ001390;DRZ002773;DRZ012740;DRZ014123
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000945,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr13:48758276..48758291,+!p1@Barx1!2.28!188.06!Barx1;;chr8:123608252..123608268,+!p1@Foxf1a!1.94!126.06!Foxf1a;;chr13:55932591..55932622,-!p1@Pitx1!1.88!88.26!Pitx1;;chr8:59799772..59799789,+!p1@Hand2!1.85!194.07!Hand2;;chr10:22539932..22539956,-!p1@Tcf21!1.85!180.15!Tcf21;;chr10:119913278..119913298,-!p2@Hmga2!1.81!138.56!Hmga2;;chr10:119914001..119914078,-!p4@Hmga2!1.79!81.61!Hmga2;;chr10:119913546..119913583,-!p3@Hmga2!1.73!106.61!Hmga2;;chr10:119913310..119913366,-!p1@Hmga2!1.68!349.08!Hmga2;;chr17:86087592..86087615,-!p1@Six2!1.58!36.85!Six2;;chr13:48758358..48758415,+!p2@Barx1!1.58!36.69!Barx1;;chr13:31717548..31717596,+!p1@Foxf2!1.43!50.93!Foxf2;;chr13:117099847..117099907,-!p1@Isl1!1.39!43.18!Isl1;;chr12:3891810..3891829,+!p2@Dnmt3a!1.37!34.96!Dnmt3a;;chr10:86956396..86956411,-!p1@Ascl1!1.34!32.27!Ascl1;;chr14:63864056..63864102,-!p1@Gata4!1.33!34.96!Gata4;;chr12:58646974..58647003,-!p1@Foxa1!1.32!26.41!Foxa1;;chr9:55388997..55389016,+!p1@Isl2!1.32!19.93!Isl2;;chr6:52154414..52154462,-!p1@Hoxa5!1.30!25.94!Hoxa5;;chr10:12810631..12810649,+!p1@Plagl1!1.26!433.70!Plagl1;;chr5:67490284..67490302,-!p1@Phox2b!1.26!17.08!Phox2b;;chr13:55932624..55932641,-!p2@Pitx1!1.25!16.77!Pitx1;;chr6:52163319..52163342,-!p1@Hoxa3!1.20!21.51!Hoxa3;;chr11:96143666..96143725,+!p1@Hoxb8!1.20!17.24!Hoxb8;;chr7:108966820..108966835,+!p1@Phox2a!1.20!15.03!Phox2a;;chr11:96153767..96153822,+!p1@Hoxb6!1.19!22.46!Hoxb6;;chr10:119913792..119913820,-!p5@Hmga2!1.18!24.20!Hmga2;;chr11:18918434..18918489,-!p3@Meis1!1.16!21.19!Meis1;;chr6:52154386..52154407,-!p2@Hoxa5!1.16!17.24!Hoxa5;;chr6:52167459..52167492,-!p1@Hoxa7!1.14!15.34!Hoxa7;;chr12:9581262..9581282,+!p1@Osr1!1.12!145.83!Osr1;;chr12:28027561..28027591,-!p1@Sox11!1.12!80.67!Sox11;;chr1:140739014..140739032,-!p1@Lhx9!1.09!14.55!Lhx9;;chr10:119913266..119913277,-!p6@Hmga2!1.09!11.39!Hmga2;;chr15:102865131..102865151,+!p2@Hoxc4!1.08!12.50!Hoxc4;;chr17:48061584..48061601,-!p2@Foxp4!1.07!70.54!Foxp4;;chr6:14851440..14851497,+!p2@Foxp2!1.07!26.73!Foxp2;;chr13:48757894..48757908,+!p5@Barx1!1.07!10.76!Barx1;;chr13:48758431..48758443,+!p3@Barx1!1.06!10.60!Barx1;;chr10:126778916..126778974,-!p1@Gli1!1.05!23.25!Gli1;;chr3:34548909..34548927,+!p1@Sox2!1.05!17.40!Sox2;;chr11:18918406..18918431,-!p6@Meis1!1.05!14.08!Meis1;;chr15:102865088..102865107,+!p1@Hoxc4!1.05!13.76!Hoxc4;;chr2:180069370..180069409,-!p1@Gata5!1.04!11.70!Gata5;;chr2:71384802..71384815,-!p1@Dlx2!1.03!12.02!Dlx2;;chr12:34642510..34642530,+!p1@Twist1!1.01!30.21!Twist1;;chr2:147871627..147871641,-!p1@Foxa2!1.01!9.33!Foxa2;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.99!15.34!Hoxb2;;chr13:55937467..55937516,-!p3@Pitx1!0.99!8.70!Pitx1;;chr9:71743854..71743909,-!p1@Tcf12!0.97!67.70!Tcf12;;chr2:74583776..74583815,+!p3@Hoxd3!0.97!8.38!Hoxd3;;chr19:10315179..10315241,-!p1@Gm98!0.96!87.47!Gm98;;chr11:96143962..96144035,+!p2@Hoxb8!0.96!8.22!Hoxb8;;chr6:52141694..52141715,-!p1@Hoxa4!0.95!10.12!Hoxa4;;chr10:119913954..119913972,-!p8@Hmga2!0.95!7.91!Hmga2;;chr11:96180045..96180059,+!p1@Hoxb4!0.94!11.07!Hoxb4;;chr17:26978409..26978442,-!p1@Nkx2-5!0.94!7.75!Nkx2-5;;chr5:29805118..29805137,-!p1@Mnx1!0.94!7.75!Mnx1;;chr13:78339134..78339185,-!p5@Nr2f1!0.93!9.33!Nr2f1;;chr13:48758328..48758335,+!p4@Barx1!0.93!7.43!Barx1;;chr11:23978291..23978323,+!p7@Bcl11a!0.93!7.43!Bcl11a;;chr12:3891753..3891801,+!p4@Dnmt3a!0.92!12.18!Dnmt3a;;chr3:128916868..128916890,+!p1@Pitx2!0.92!10.28!Pitx2;;chr6:14851250..14851277,+!p4@Foxp2!0.92!9.65!Foxp2;;chr2:115891534..115891589,-!p1@Meis2!0.91!104.39!Meis2;;chr2:104966766..104966786,+!p1@Wt1!0.91!11.39!Wt1;;chr6:83020355..83020371,-!p1@Tlx2!0.91!7.12!Tlx2;;chr7:52471143..52471186,+!p1@Tead2!0.90!77.03!Tead2;;chr12:9581284..9581303,+!p2@Osr1!0.89!13.29!Osr1;;chr13:31717597..31717613,+!p2@Foxf2!0.89!6.80!Foxf2;;chr2:71367871..71367898,+!p1@Dlx1!0.89!6.80!Dlx1;;chr6:14851287..14851342,+!p1@Foxp2!0.88!22.78!Foxp2;;chr10:119913974..119913992,-!p9@Hmga2!0.88!6.64!Hmga2;;chr16:14705961..14705978,+!p2@Snai2!0.87!31.79!Snai2;;chr5:42155788..42155800,-!p1@Nkx3-2!0.87!6.48!Nkx3-2;;chr1:170361991..170362015,-!p6@Pbx1!0.86!14.55!Pbx1;;chr14:17407549..17407575,-!p3@Rarb!0.86!9.81!Rarb;;chr15:102844431..102844445,+!p1@Hoxc5!0.86!6.33!Hoxc5;;chr11:57645506..57645523,-!p1@Hand1!0.86!6.33!Hand1;;chr8:87425854..87425891,+!p1@Klf1!0.86!6.17!Klf1;;chr2:152223783..152223812,-!p4@Sox12!0.85!14.39!Sox12;;chr4:84320893..84320910,-!p1@Bnc2!0.85!14.24!Bnc2;;chr4:99322820..99322845,+!p1@Foxd3!0.85!7.91!Foxd3;;chr10:119913839..119913869,-!p7@Hmga2!0.85!7.75!Hmga2;;chr11:96213264..96213282,+!p@chr11:96213264..96213282,+!0.85!7.75!Hoxb2;;chr11:96164821..96164865,+!p1@Hoxb5!0.85!6.01!Hoxb5;;chr2:115890469..115890485,-!p7@Meis2!0.84!9.65!Meis2;;chr12:9581317..9581333,+!p3@Osr1!0.83!9.02!Osr1;;chr15:102865048..102865073,+!p3@Hoxc4!0.83!7.43!Hoxc4;;chr11:18918917..18918944,-!p1@Meis1!0.82!78.45!Meis1;;chr19:7342725..7342784,+!p1@Rcor2!0.82!24.67!Rcor2;;chr6:52167434..52167450,-!p3@Hoxa7!0.82!5.54!Hoxa7;;chr8:90483433..90483457,-!p2@Zfp423!0.81!7.59!Zfp423;;chr16:14705925..14705951,+!p1@Snai2!0.80!40.65!Snai2;;chr4:13670571..13670625,+!p1@Runx1t1!0.80!15.50!Runx1t1;;chr7:89137163..89137200,-!p1@Bnc1!0.79!6.33!Bnc1;;chr7:146768691..146768707,-!p1@Nkx6-2!0.79!5.22!Nkx6-2;;chr15:78994907..78994926,-!p1@Sox10!0.78!13.92!Sox10;;chr6:14851403..14851422,+!p8@Foxp2!0.78!5.06!Foxp2;;chr6:14851212..14851226,+!p12@Foxp2!0.78!5.06!Foxp2;;chr11:96180069..96180089,+!p3@Hoxb4!0.78!5.06!Hoxb4;;chr13:15555670..15555771,+!p2@Gli3!0.77!13.13!Gli3;;chr14:17407878..17407926,-!p1@Rarb!0.77!11.70!Rarb;;chr17:26978521..26978536,-!p2@Nkx2-5!0.77!4.90!Nkx2-5;;chr17:37139472..37139514,+!p1@Zfp57!0.76!35.27!Zfp57;;chr6:52114821..52114828,-!p1@Hoxa2!0.76!7.43!Hoxa2;;chr14:118636214..118636235,-!p1@Sox21!0.76!5.85!Sox21;;chr3:29911808..29911833,-!p8@Mecom!0.76!4.75!Mecom;;chr17:28487603..28487626,-!p2@Tead3!0.75!10.44!Tead3;;chr13:78339382..78339420,-!p3@Nr2f1!0.75!5.54!Nr2f1;;chr3:34548946..34548972,+!p2@Sox2!0.75!5.22!Sox2;;chr11:96164905..96164919,+!p2@Hoxb5!0.75!4.59!Hoxb5;;chr2:152223441..152223465,-!p2@Sox12!0.74!20.56!Sox12;;chr9:106356211..106356242,+!p1@Pcbp4!0.73!94.74!Pcbp4;;chr12:12948633..12948651,-!p1@Mycn!0.73!46.34!Mycn;;chr11:99092233..99092273,-!p2@Smarce1!0.73!23.09!Smarce1;;chr7:17647736..17647772,-!p1@Hif3a!0.73!17.08!Hif3a;;chr2:115891409..115891425,-!p2@Meis2!0.73!13.92!Meis2;;chr11:18918820..18918831,-!p4@Meis1!0.73!8.86!Meis1;;chr6:14851344..14851364,+!p6@Foxp2!0.73!5.38!Foxp2;;chr5:67490391..67490404,-!p3@Phox2b!0.73!4.43!Phox2b;;chrX:45245679..45245702,-!p1@Smarca1!0.72!21.04!Smarca1;;chr2:163332558..163332596,+!p2@Hnf4a!0.72!4.27!Hnf4a;;chr11:96160426..96160443,+!p2@Hoxb6!0.72!4.27!Hoxb6;;chr7:6649134..6649167,-!p1@Zim1!0.71!24.99!Zim1;;chr11:3189683..3189744,+!p2@Patz1!0.71!9.17!Patz1;;chr10:119913301..119913302,-!p11@Hmga2!0.71!4.11!Hmga2;;chr19:43686789..43686811,+!p1@Nkx2-3!0.71!4.11!Nkx2-3;;chr2:71367142..71367167,+!p2@Dlx1!0.71!4.11!Dlx1;;chr7:77511234..77511302,-!p2@Nr2f2!0.70!30.37!Nr2f2;;chr17:35031460..35031518,+!p1@Zbtb12!0.69!22.14!Zbtb12;;chr17:48061605..48061629,-!p6@Foxp4!0.69!17.71!Foxp4;;chr13:78339476..78339515,-!p1@Nr2f1!0.69!6.33!Nr2f1;;chr3:5218516..5218544,+!p2@Zfhx4!0.69!6.17!Zfhx4;;chr14:22807083..22807104,-!p1@Zfp503!0.68!76.55!Zfp503;;chr2:115891427..115891441,-!p4@Meis2!0.68!8.86!Meis2;;chr2:146047829..146047847,+!p1@Insm1!0.68!7.28!Insm1;;chr11:96145450..96145517,+!p2@Hoxb7!0.68!6.01!Hoxb7;;chrX:110411840..110411860,+!p1@Dach2!0.68!4.75!Dach2;;chr5:67490474..67490494,-!p2@Phox2b!0.68!3.80!Phox2b;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.67!3.64!Foxl1;;chr2:104966874..104966907,+!p2@Wt1!0.67!3.64!Wt1;;chr14:63864337..63864381,-!p6@Gata4!0.67!3.64!Gata4;;chr12:39510206..39510249,+!p3@Etv1!0.67!3.64!Etv1;;chr6:98978245..98978289,-!p1@Foxp1!0.66!60.89!Foxp1;;chr3:5218629..5218684,+!p1@Zfhx4!0.66!13.13!Zfhx4;;chr4:54957910..54957954,+!p2@Zfp462!0.66!12.02!Zfp462;;chr2:156666727..156666753,+!p2@Tgif2!0.66!5.54!Tgif2;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.66!4.90!Hoxb2;;chr1:170361695..170361722,-!p12@Pbx1!0.66!4.75!Pbx1;;chr11:23978353..23978379,+!p10@Bcl11a!0.66!4.43!Bcl11a;;chr2:65683890..65683907,+!p1@Csrnp3!0.65!7.28!Csrnp3;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!0.65!6.64!Zfhx3;;chr19:25746898..25746910,+!p1@Dmrt2!0.65!5.54!Dmrt2;;chr11:96213183..96213188,+!p@chr11:96213183..96213188,+!0.65!3.48!Hoxb2;;chr5:102094214..102094230,-!p1@Nkx6-1!0.65!3.48!Nkx6-1;;chr6:14851377..14851396,+!p10@Foxp2!0.65!3.48!Foxp2;;chr14:52634234..52634281,-!p3@Zfp219!0.64!10.60!Zfp219;;chr13:22036953..22037009,+!p1@Zfp184!0.64!10.12!Zfp184;;chr2:115891381..115891392,-!p5@Meis2!0.64!7.28!Meis2;;chr13:78339241..78339273,-!p9@Nr2f1!0.64!3.32!Nr2f1;;chr9:74709695..74709722,+!p1@Onecut1!0.64!3.32!Onecut1;;chr3:3508024..3508069,+!p2@Hnf4g!0.64!3.32!Hnf4g;;chr11:96160360..96160397,+!p3@Hoxb6!0.64!3.32!Hoxb6;;chr1:137155026..137155042,-!p1@Elf3!0.63!21.99!Elf3;;chr14:56443806..56443848,+!p1@Nfatc4!0.63!7.28!Nfatc4;;chr7:77505617..77505632,-!p1@Nr2f2!0.62!175.88!Nr2f2;;chr7:135019147..135019187,-!p3@Zfp668!0.62!7.75!Zfp668;;chr19:7342786..7342803,+!p2@Rcor2!0.62!4.43!Rcor2;;chr2:17976799..17976829,+!p5@Mllt10!0.62!4.11!Mllt10;;chr11:96143843..96143868,+!p3@Hoxb8!0.62!3.16!Hoxb8;;chr14:63890519..63890539,-!p3@Gata4!0.62!3.16!Gata4;;chr15:102849395..102849404,+!p4@Hoxc4!0.62!3.16!Hoxc4;;chr17:27865882..27865901,-!p1@Spdef!0.62!3.16!Spdef;;chr2:84877369..84877459,+!p1@Ssrp1!0.61!77.03!Ssrp1;;chr6:72739185..72739232,-!p1@Tcf7l1!0.61!38.12!Tcf7l1;;chr2:130120884..130120972,+!p1@Ebf4!0.61!21.35!Ebf4;;chr17:27693788..27693803,+!p3@Hmga1,p4@Hmga1-rs1!0.61!16.13!Hmga1;;chr17:25707623..25707639,-!p1@Sox8!0.61!15.34!Sox8;;chr4:13670499..13670526,+!p2@Runx1t1!0.61!7.59!Runx1t1;;chr14:56443698..56443726,+!p2@Nfatc4!0.61!6.48!Nfatc4;;chr5:24107676..24107722,-!p4@Smarcd3!0.61!4.43!Smarcd3;;chr6:14851547..14851571,+!p7@Foxp2!0.61!3.80!Foxp2;;chr11:18918959..18918976,-!p2@Mei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41.91!Erf;;chr4:40216811..40216882,-!p1@Topors!0.28!32.11!Topors;;chr9:19426523..19426584,+!p1@Zfp317!0.28!24.83!Zfp317;;chr7:134758740..134758783,-!p1@Zfp629!0.28!24.04!Zfp629;;chr6:81873639..81873700,+!p1@AW146020!0.28!23.88!AW146020;;chr17:31701694..31701799,+!p1@Pknox1!0.28!18.35!Pknox1;;chr10:82226649..82226694,-!p2@Nfyb!0.28!10.28!Nfyb;;chr14:65977324..65977372,+!p2@Zfp395!0.28!9.17!Zfp395;;chr11:50729638..50729681,-!p1@Zfp2!0.28!8.22!Zfp2;;chr2:72817659..72817725,-!p5@Sp3!0.28!6.48!Sp3;;chr4:6917606..6917681,-!p1@Tox!0.28!6.48!Tox;;chr19:26681672..26681716,+!p5@Smarca2!0.28!6.48!Smarca2;;chr6:118405493..118405536,-!p1@Zfp248!0.28!5.85!Zfp248;;chr18:69504123..69504155,+!p5@Tcf4!0.28!5.54!Tcf4;;chr4:120624269..120624302,-!p1@Zfp69!0.28!5.38!Zfp69;;chr10:80870405..80870428,-!p4@Nfic!0.28!3.95!Nfic;;chr2:153475210..153475252,+!p2@Dnmt3b!0.28!3.95!Dnmt3b;;chr8:111227738..111227793,+!p@chr8:111227738..111227793,+!0.28!3.48!Zfhx3;;chr18:83080255..83080277,+!p4@Zfp516!0.28!3.48!Zfp516;;chr17:45570511..45570532,-!p5@Cdc5l!0.28!3.48!Cdc5l;;chr7:30691543..30691586,-!p2@Zfp27!0.28!3.16!Zfp27;;chr19:26681721..26681746,+!p9@Smarca2!0.28!2.69!Smarca2;;chr5:120120667..120120685,+!p3@Tbx3!0.28!2.53!Tbx3;;chr1:95651267..95651284,-!p4@Thap4!0.28!2.37!Thap4;;chr7:30092993..30093076,+!p1@Dpf1!0.28!2.21!Dpf1;;chr2:127347094..127347111,-!p2@Kcnip3!0.28!2.06!Kcnip3;;chr2:92886587..92886622,-!p3@Prdm11!0.28!1.74!Prdm11;;chr7:134592574..134592591,-!p2@Zfp689!0.28!1.74!Zfp689;;chr7:134169357..134169366,-!p18@Maz!0.28!1.27!Maz;;chr12:37835203..37835218,+!p3@Meox2!0.28!1.27!Meox2;;chr12:54349410..54349461,+!p1@Npas3!0.28!1.27!Npas3;;chr10:114821382..114821392,-!p8@Thap2!0.28!1.27!Thap2;;chr6:6831950..6831985,-!p2@Dlx5!0.28!1.11!Dlx5;;chr11:99091744..99091778,-!p1@Smarce1!0.27!71.33!Smarce1;;chr8:13869673..13869740,+!p1@Zfp828!0.27!40.02!Zfp828;;chr9:20757282..20757325,-!p2@Dnmt1!0.27!38.75!Dnmt1;;chr18:14131126..14131211,-!p1@Zfp521!0.27!34.80!Zfp521;;chr2:25562346..25562433,+!p1@Bmyc!0.27!30.37!Bmyc;;chr10:110182489..110182589,+!p1@E2f7!0.27!19.61!E2f7;;chr5:134790548..134790591,-!p3@Gtf2i!0.27!18.03!Gtf2i;;chr7:28516417..28516460,+!p1@Zfp60!0.27!13.92!Zfp60;;chr17:4994904..4994953,+!p3@Arid1b!0.27!12.34!Arid1b;;chr1:38684260..38684312,-!p2@Aff3!0.27!11.23!Aff3;;chr6:144730427..144730508,-!p1@Sox5!0.27!9.65!Sox5;;chr2:92886297..92886329,-!p1@Prdm11!0.27!7.12!Prdm11;;chr13:56804865..56804898,+!p3@Smad5!0.27!3.64!Smad5;;chr12:85657780..85657815,+!p2@Zfp410!0.27!3.64!Zfp410;;chrX:70587989..70588000,+!p3@Zfp275!0.27!2.53!Zfp275;;chr4:82151583..82151594,-!p6@Nfib!0.27!2.53!Nfib;;chr18:79306577..79306592,-!p3@Setbp1!0.27!2.53!Setbp1;;chr8:94325847..94325869,-!p3@Irx3!0.27!1.90!Irx3;;chr17:32525943..32525992,-!p4@Wiz!0.27!1.74!Wiz;;chr1:165243653..165243664,-!p4@Prrx1!0.27!1.58!Prrx1;;chr18:76219161..76219176,+!p4@Zbtb7c!0.27!1.42!Zbtb7c;;chr7:17200198..17200209,-!p8@Grlf1!0.27!1.42!Grlf1;;chr13:31898767..31898785,+!p4@Foxc1!0.27!1.27!Foxc1;;chr13:30077917..30077928,-!p4@E2f3!0.27!1.27!E2f3;;chr4:13670661..13670681,+!p12@Runx1t1!0.27!1.11!Runx1t1;;chr5:77694479..77694574,+!p1@Rest!0.26!34.64!Rest;;chr10:76424613..76424689,-!p1@Pcbp3!0.26!34.64!Pcbp3;;chr17:23723181..23723236,-!p1@Zfp13!0.26!15.34!Zfp13;;chr10:20032304..20032324,+!p2@Bclaf1!0.26!15.18!Bclaf1;;chr4:97444012..97444045,+!p4@Nfia!0.26!11.86!Nfia;;chr14:55482892..55482988,-!p1@Homez!0.26!10.44!Homez;;chr5:120121020..120121049,+!p1@Tbx3!0.26!9.49!Tbx3;;chr7:30568977..30569047,+!p1@Zfp30!0.26!8.54!Zfp30;;chr14:100683672..100683717,-!p1@Klf12!0.26!6.96!Klf12;;chr2:169458519..169458555,+!p2@Tshz2!0.26!6.01!Tshz2;;chr2:34227446..34227511,-!p1@Pbx3!0.26!3.01!Pbx3;;chr13:37918094..37918119,+!p6@Rreb1!0.26!2.85!Rreb1;;chr14:52639709..52639753,-!p5@Zfp219!0.26!2.85!Zfp219;;chr7:49761111..49761128,-!p2@ENSMUST00000174407,p2@uc009gmb.1!0.26!2.69!Zfp141;;chr18:24113349..24113374,+!p2@Zfp397!0.26!2.69!Zfp397;;chr17:4994491..4994531,+!p6@Arid1b!0.26!2.53!Arid1b;;chr6:72185553..72185612,-!p2@Atoh8!0.26!2.37!Atoh8;;chr5:147760297..147760304,+!p4@Gtf3a!0.26!2.21!Gtf3a;;chr11:101645830..101645881,-!p2@Etv4!0.26!2.21!Etv4;;chr15:40486754..40486771,+!p2@Zfpm2!0.26!2.06!Zfpm2;;chr2:91864449..91864492,-!p3@Creb3l1!0.26!1.90!Creb3l1;;chr3:103772552..103772584,+!p2@Phtf1!0.26!1.74!Phtf1;;chr5:138187411..138187422,+!p8@Tsc22d4!0.26!1.74!Tsc22d4;;chr9:110034493..110034502,+!p2@Smarcc1!0.26!1.74!Smarcc1;;chr8:111227455..111227464,+!p@chr8:111227455..111227464,+!0.26!1.27!Zfhx3;;chr10:30562617..30562637,-!p2@Hey2!0.26!1.27!Hey2;;chr8:26951227..26951266,-!p1@Ash2l!0.25!64.53!Ash2l;;chr7:30880169..30880211,+!p1@Zfp260!0.25!51.56!Zfp260;;chr17:28314075..28314159,+!p1@Zfp523!0.25!18.66!Zfp523;;chr5:145965392..145965443,+!p1@Zkscan5!0.25!14.08!Zkscan5;;chr8:108160490..108160512,+!p2@Ctcf!0.25!12.81!Ctcf;;chr9:20385951..20386032,+!p1@Zfp846!0.25!12.50!Zfp846;;chr8:81552152..81552208,+!p1@Zfp827!0.25!10.91!Zfp827;;chr17:51952617..51952680,-!p3@Satb1!0.25!7.43!Satb1;;chr3:94819136..94819168,-!p2@Zfp687!0.25!7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7l2!0.23!1.58!Tcf7l2;;chrX:7339674..7339688,+!p6@Tfe3!0.23!1.58!Tfe3;;chr3:94668075..94668087,+!p6@Pogz!0.23!1.42!Pogz;;chr18:65741911..65741929,+!p3@Zfp532!0.23!1.27!Zfp532;;chr19:55817261..55817274,+!p15@Tcf7l2!0.23!1.11!Tcf7l2;;chr13:78338076..78338104,-!p4@Nr2f1!0.23!1.11!Nr2f1;;chr6:144157924..144157955,-!p2@Sox5!0.23!1.11!Sox5;;chr2:74549968..74549996,+!p1@Hoxd3!0.23!1.11!Hoxd3;;chr7:17642018..17642045,-!p4@Hif3a!0.23!0.95!Hif3a;;chr6:15135439..15135452,+!p13@Foxp2!0.23!0.95!Foxp2;;chr12:81213989..81214006,-!p1@Zfp36l1!0.22!77.34!Zfp36l1;;chr19:5912771..5912822,-!p1@Dpf2!0.22!64.53!Dpf2;;chr9:32503590..32503680,+!p1@Ets1!0.22!54.09!Ets1;;chr8:13338760..13338817,+!p1@Tfdp1!0.22!51.09!Tfdp1;;chr15:81702313..81702346,-!p1@Phf5a!0.22!45.08!Phf5a;;chr6:48395743..48395820,-!p1@Zfp467!0.22!31.48!Zfp467;;chr4:82151274..82151290,-!p3@Nfib!0.22!23.88!Nfib;;chr11:83943084..83943122,-!p1@Tada2a!0.22!21.99!Tada2a;;chr9:36954842..36954908,-!p1@Pknox2!0.22!16.77!Pknox2;;chr8:108939219..108939296,+!p1@Zfp90!0.22!15.34!Zfp90;;chr6:47827642..47827707,+!p1@Zfp282!0.22!15.34!Zfp282;;chr1:167932744..167932778,-!p1@Pou2f1!0.22!12.81!Pou2f1;;chr3:94641624..94641645,+!p2@Pogz!0.22!9.49!Pogz;;chr5:139060892..139060911,-!p2@Zfp68!0.22!6.64!Zfp68;;chr4:63064364..63064384,-!p1@Akna!0.22!3.64!Akna;;chr8:112229540..112229566,+!p2@Zfp821!0.22!2.53!Zfp821;;chr7:50817661..50817687,+!p2@LOC100505180,p2@Zfp658!0.22!2.53!Zfp658;;chr5:122500142..122500167,-!p2@Cux2!0.22!2.37!Cux2;;chr18:55149986..55150009,-!p7@Zfp608!0.22!2.06!Zfp608;;chr15:50721239..50721260,-!p9@Trps1!0.22!1.74!Trps1;;chr18:79306603..79306620,-!p4@Setbp1!0.22!1.58!Setbp1;;chr15:50721777..50721803,-!p11@Trps1!0.22!1.42!Trps1;;chr7:135020660..135020688,+!p3@Zfp646!0.22!1.27!Zfp646;;chr16:30065394..30065398,+!p3@Hes1!0.22!1.27!Hes1;;chr4:154010228..154010244,-!p4@Prdm16!0.22!1.27!Prdm16;;chr3:96002383..96002407,-!p4@Bola1!0.22!1.11!Bola1;;chr1:179374784..179374800,+!p2@Zfp238!0.22!0.95!Zfp238;;chr8:94881872..94881887,+!p2@Irx5!0.22!0.79!Irx5;;chr4:135699731..135699747,+!p1@Id3!0.21!164.34!Id3;;chr7:119822841..119822887,+!p1@Tead1!0.21!46.50!Tead1;;chr1:170362273..170362317,-!p1@Pbx1!0.21!41.76!Pbx1;;chr12:117285924..117286018,+!p1@Zfp386!0.21!40.97!Zfp386;;chr7:134170235..134170294,-!p1@Maz!0.21!40.97!Maz;;chr13:48356475..48356492,+!p1@Id4!0.21!31.48!Id4;;chr17:35653725..35653780,-!p1@Tcf19!0.21!24.20!Tcf19;;chr6:64992801..64992894,+!p2@Smarcad1!0.21!20.56!Smarcad1;;chr7:17199897..17199955,-!p1@Grlf1!0.21!15.82!Grlf1;;chr10:80813050..80813114,-!p2@Hmg20b!0.21!15.34!Hmg20b;;chr8:112229478..112229536,+!p1@Zfp821!0.21!12.18!Zfp821;;chr7:52960555..52960662,+!p1@Dbp!0.21!11.86!Dbp;;chr4:135841976..135842029,+!p2@Zfp46!0.21!10.28!Zfp46;;chr13:21622917..21622952,-!p1@Zfp192!0.21!9.02!Zfp192;;chr5:34163023..34163090,+!p2@Whsc1!0.21!8.86!Whsc1;;chr10:79017833..79017871,-!p1@Mier2!0.21!7.59!Mier2;;chr7:50834947..50835010,+!p2@Zfp719!0.21!7.12!Zfp719;;chr17:48061409..48061431,-!p4@Foxp4!0.21!6.96!Foxp4;;chr13:44826095..44826185,+!p4@Jarid2!0.21!6.64!Jarid2;;chr3:32409460..32409483,+!p2@Zfp639!0.21!6.17!Zfp639;;chr4:151401741..151401793,-!p1@Zbtb48!0.21!5.54!Zbtb48;;chr9:63605978..63605997,-!p2@Smad3!0.21!5.06!Smad3;;chr8:72662966..72662991,-!p3@LOC100048268,p3@Rfxank!0.21!4.43!Rfxank;;chr5:107125807..107125835,-!p3@Zfp644!0.21!3.32!Zfp644;;chr7:13063643..13063662,+!p2@Zfp606!0.21!3.01!Zfp606;;chr1:15795704..15795713,+!p2@Terf1!0.21!2.85!Terf1;;chr10:30562571..30562597,-!p1@Hey2!0.21!2.69!Hey2;;chr18:7004715..7004731,-!p1@Mkx!0.21!2.69!Mkx;;chr4:45024818..45024846,-!p4@Zbtb5!0.21!1.90!Zbtb5;;chr9:72380594..72380635,+!p3@Rfx7!0.21!1.74!Rfx7;;chr7:88138313..88138368,+!p4@Zfp592!0.21!1.74!Zfp592;;chr11:70043257..70043263,-!p1@Bcl6b!0.21!1.74!Bcl6b;;chr11:85646427..85646451,+!p4@Tbx2!0.21!1.74!Tbx2;;chr15:100382267..100382287,-!p3@Tfcp2!0.21!1.58!Tfcp2;;chr17:46693053..46693064,-!p4@Srf!0.21!1.27!Srf;;chr7:5003102..5003113,+!p4@Zfp580!0.21!1.27!Zfp580;;chr9:48644284..48644305,-!p4@Zbtb16!0.21!1.11!Zbtb16;;chr18:69504229..69504240,+!p16@Tcf4!0.21!1.11!Tcf4;;chr12:100802113..100802127,-!p5@Foxn3!0.21!1.11!Foxn3;;chr13:40826150..40826167,-!p3@Tfap2a!0.21!0.79!Tfap2a;;chr1:170362027..170362036,-!p15@Pbx1!0.21!0.79!Pbx1;;chr2:181501988..181502026,+!p3@Myt1!0.21!0.63!Myt1;;chr2:126501799..126501832,-!p4@Gabpb1!0.21!0.63!Gabpb1;;chr2:105003277..105003280,+!p5@Wt1!0.21!0.63!Wt1;;chr2:127347042..127347058,-!p3@Kcnip3!0.21!0.63!Kcnip3;;chr2:147872790..147872821,-!p2@Foxa2!0.21!0.63!Foxa2;;chr2:168032254..168032259,-!p6@Adnp!0.21!0.63!Adnp;;chr2:115874845..115874865,-!p20@Meis2!0.21!0.63!Meis2;;chr1:136186545..136186554,+!p2@Myog!0.21!0.63!Myog;;chr1:189821700..189821713,+!p4@Esrrg!0.21!0.63!Esrrg;;chr11:83664334..83664353,+!p2@Hnf1b!0.21!0.63!Hnf1b;;chr11:23977965..23977974,+!p11@Bcl11a!0.21!0.63!Bcl11a;;chr11:69749367..69749385,+!p4@Ybx2!0.21!0.63!Ybx2;;chr11:96132637..96132652,+!p1@Hoxb9!0.21!0.63!Hoxb9;;chr5:120285130..120285141,+!p3@Tbx5!0.21!0.63!Tbx5;;chr5:42155277..42155281,-!p2@Nkx3-2!0.21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@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011321
 |is_obsolete=
+|library_id=CNhs10588
+|library_id_phase_based=2:CNhs10588
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;356
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;356
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E12.CNhs10588.356-43E3.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E12.CNhs10588.356-43E3.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E12.CNhs10588.356-43E3.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E12.CNhs10588.356-43E3.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E12.CNhs10588.356-43E3.mm9.nobarcode.rdna.fa.gz
 |name=stomach, embryo E12
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10588,LSID653,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.0113461256727119,0,0,0,0,0,-0.306924644892915,0,0,0,0,0.327563164541251,0,0,0,0,0,0,-0.0725265941778428,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.234721985771199,0,0,0,0,0,-0.065316371044731,0.036942669937028,-0.148549067008219,0.224877929858476,0.315256251167822,0,0,0,0,0,0,0,0,0,0,0,0,0.0533612091412914,0.0637715600712905,0,0,0,-0.0223379438904837,0,0,0,0.0637715600712905,0,0.0190913609316022,-0.0575938750587196,-0.158091042771083,-0.0141592921269596,0,0,0.0368237638921154,0,0.0637715600712905,0,0.0338433534950908,-0.0144849818428343,-0.133814107622476,-0.0788315948399074,0,0,0,0,0,0,-0.155021968063249,-0.230182977801673,-0.11138883105542,0,0,0,0,0
@@ Line 59: / Line 73: @@
 |rna_rin=
 |rna_sample_type=
-|rna_tube_id=43E3
+|rna_tube_id=4.30E+04
 |rna_weight_ug=
 |sample_age=
@@ Line 83: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:356-43E3;search_select_hide=table117:356-43E3
 }}

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FF:356-43E3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:10, 4 June 2020

CNhs10588

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0