FF:411-4I9: Difference between revisions

Latest revision as of 19:16, 4 June 2020

Name:	kidney, embryo E14
Species:	Mouse (Mus musculus)
Library ID:	CNhs10606
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	kidney
dev stage	14 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005957

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10606		CAGE		DRX009004		DRR009878

Accession ID Mm9

Library id		BAM		CTSS
CNhs10606		DRZ001303		DRZ002686

Accession ID Mm10

Library id		BAM		CTSS
CNhs10606		DRZ012653		DRZ014036

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10606

0	0
1	0
10	0
100	0
1000	-0.00177
1001	-0.0749
1002	0.126
1003	-0.0754
1004	0
1005	-0.0575
1006	-0.108
1007	0.141
1008	0
1009	-0.0145
101	0.0657
1010	0
1011	0
1012	0
1013	-0.143
1014	0.14
1015	0.307
1016	0.226
1017	0
1018	0
1019	0
102	0
1020	0.0754
1021	0.14
1022	-0.109
1023	0
1024	-0.0496
1025	0.0348
1026	0
1027	0
1028	0
1029	-0.148
103	0.0223
1030	0
1031	0.359
1032	-0.0175
1033	0.00893
1034	0
1035	0
1036	0.081
1037	0
1038	-0.166
1039	-0.104
104	0
1040	0.0558
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10606

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.149
MA0003.1	MA0003.1	0.379
MA0004.1	MA0004.1	0.659
MA0006.1	MA0006.1	0.901
MA0007.1	MA0007.1	0.55
MA0009.1	MA0009.1	0.312
MA0014.1	MA0014.1	0.336
MA0017.1	MA0017.1	0.031
MA0018.2	MA0018.2	0.317
MA0019.1	MA0019.1	0.32
MA0024.1	MA0024.1	4.63847e-6
MA0025.1	MA0025.1	0.477
MA0027.1	MA0027.1	0.0733
MA0028.1	MA0028.1	0.00113
MA0029.1	MA0029.1	0.396
MA0030.1	MA0030.1	0.585
MA0031.1	MA0031.1	0.297
MA0035.2	MA0035.2	0.0876
MA0038.1	MA0038.1	0.0439
MA0039.2	MA0039.2	0.672
MA0040.1	MA0040.1	0.902
MA0041.1	MA0041.1	0.198
MA0042.1	MA0042.1	0.676
MA0043.1	MA0043.1	0.0775
MA0046.1	MA0046.1	5.15563e-8
MA0047.2	MA0047.2	0.361
MA0048.1	MA0048.1	0.0139
MA0050.1	MA0050.1	7.65232e-8
MA0051.1	MA0051.1	4.2583e-5
MA0052.1	MA0052.1	0.0263
MA0055.1	MA0055.1	6.61729e-4
MA0057.1	MA0057.1	0.63
MA0058.1	MA0058.1	0.332
MA0059.1	MA0059.1	0.248
MA0060.1	MA0060.1	1.38014e-17
MA0061.1	MA0061.1	0.343
MA0062.2	MA0062.2	0.00276
MA0065.2	MA0065.2	0.21
MA0066.1	MA0066.1	0.167
MA0067.1	MA0067.1	0.118
MA0068.1	MA0068.1	0.818
MA0069.1	MA0069.1	0.143
MA0070.1	MA0070.1	0.214
MA0071.1	MA0071.1	0.445
MA0072.1	MA0072.1	0.0424
MA0073.1	MA0073.1	0.833
MA0074.1	MA0074.1	0.193
MA0076.1	MA0076.1	0.00356
MA0077.1	MA0077.1	0.0345
MA0078.1	MA0078.1	0.703
MA0079.2	MA0079.2	0.691
MA0080.2	MA0080.2	0.00316
MA0081.1	MA0081.1	0.833
MA0083.1	MA0083.1	0.0165
MA0084.1	MA0084.1	0.531
MA0087.1	MA0087.1	0.949
MA0088.1	MA0088.1	0.698
MA0090.1	MA0090.1	0.456
MA0091.1	MA0091.1	0.628
MA0092.1	MA0092.1	0.387
MA0093.1	MA0093.1	0.612
MA0099.2	MA0099.2	0.0653
MA0100.1	MA0100.1	0.766
MA0101.1	MA0101.1	0.734
MA0102.2	MA0102.2	0.119
MA0103.1	MA0103.1	0.0728
MA0104.2	MA0104.2	0.126
MA0105.1	MA0105.1	0.764
MA0106.1	MA0106.1	0.137
MA0107.1	MA0107.1	0.565
MA0108.2	MA0108.2	0.0774
MA0111.1	MA0111.1	0.55
MA0112.2	MA0112.2	0.00817
MA0113.1	MA0113.1	0.739
MA0114.1	MA0114.1	0.0644
MA0115.1	MA0115.1	0.434
MA0116.1	MA0116.1	0.453
MA0117.1	MA0117.1	0.0502
MA0119.1	MA0119.1	0.0229
MA0122.1	MA0122.1	0.964
MA0124.1	MA0124.1	0.736
MA0125.1	MA0125.1	0.422
MA0131.1	MA0131.1	0.108
MA0135.1	MA0135.1	0.0111
MA0136.1	MA0136.1	0.713
MA0137.2	MA0137.2	0.932
MA0138.2	MA0138.2	0.011
MA0139.1	MA0139.1	0.658
MA0140.1	MA0140.1	0.05
MA0141.1	MA0141.1	0.0939
MA0142.1	MA0142.1	0.452
MA0143.1	MA0143.1	0.126
MA0144.1	MA0144.1	0.888
MA0145.1	MA0145.1	0.731
MA0146.1	MA0146.1	0.488
MA0147.1	MA0147.1	0.0904
MA0148.1	MA0148.1	0.027
MA0149.1	MA0149.1	0.109
MA0150.1	MA0150.1	0.00459
MA0152.1	MA0152.1	0.96
MA0153.1	MA0153.1	7.41388e-4
MA0154.1	MA0154.1	0.0244
MA0155.1	MA0155.1	0.0991
MA0156.1	MA0156.1	0.626
MA0157.1	MA0157.1	0.214
MA0159.1	MA0159.1	0.234
MA0160.1	MA0160.1	0.243
MA0162.1	MA0162.1	0.41
MA0163.1	MA0163.1	0.791
MA0164.1	MA0164.1	0.779
MA0258.1	MA0258.1	0.00438
MA0259.1	MA0259.1	0.488

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10606

Novel motif	Logo	P-value
1	1	0.0143
10	10	0.344
100	100	0.659
101	101	0.664
102	102	0.946
103	103	0.0373
104	104	0.963
105	105	0.445
106	106	0.031
107	107	0.291
108	108	0.731
109	109	0.927
11	11	0.383
110	110	0.834
111	111	0.0118
112	112	0.21
113	113	0.382
114	114	0.00704
115	115	0.765
116	116	0.62
117	117	0.9
118	118	0.243
119	119	0.172
12	12	0.812
120	120	0.766
121	121	0.462
122	122	0.697
123	123	0.0751
124	124	0.552
125	125	0.271
126	126	0.837
127	127	0.0116
128	128	0.121
129	129	0.0746
13	13	0.793
130	130	0.621
131	131	0.78
132	132	0.42
133	133	0.815
134	134	0.306
135	135	0.572
136	136	0.0568
137	137	0.263
138	138	0.28
139	139	0.00147
14	14	0.202
140	140	0.0295
141	141	0.427
142	142	0.0126
143	143	0.656
144	144	0.478
145	145	0.957
146	146	0.904
147	147	0.361
148	148	0.34
149	149	0.299
15	15	0.109
150	150	0.586
151	151	0.0765
152	152	0.316
153	153	0.116
154	154	0.42
155	155	0.528
156	156	0.132
157	157	0.93
158	158	0.389
159	159	0.0614
160	160	0.995
161	161	0.431
162	162	0.922
163	163	0.058
164	164	0.427
165	165	0.916
166	166	0.324
167	167	0.132
168	168	0.391
169	169	0.867
17	17	0.217
18	18	0.426
19	19	0.775
2	2	0.759
20	20	0.508
21	21	0.575
22	22	0.821
23	23	0.0122
24	24	0.612
25	25	0.441
26	26	0.756
27	27	0.816
28	28	0.157
29	29	0.834
3	3	0.279
30	30	0.65
31	31	0.375
32	32	0.345
33	33	0.333
34	34	0.657
35	35	0.054
36	36	0.91
37	37	0.434
38	38	0.491
39	39	0.844
4	4	0.966
40	40	0.421
41	41	0.574
42	42	0.392
43	43	0.135
44	44	0.707
45	45	0.788
46	46	0.278
47	47	0.334
48	48	0.479
49	49	0.0601
5	5	0.0832
50	50	0.346
51	51	0.373
52	52	0.666
53	53	0.671
54	54	0.245
55	55	0.433
56	56	0.322
57	57	0.376
58	58	0.206
59	59	0.578
6	6	0.724
60	60	0.447
61	61	0.942
62	62	0.053
63	63	0.281
64	64	0.935
65	65	0.379
66	66	0.113
67	67	0.429
68	68	0.237
69	69	0.541
7	7	0.423
70	70	0.0164
71	71	0.691
72	72	0.787
73	73	0.637
74	74	0.672
75	75	0.551
76	76	0.719
77	77	0.714
78	78	0.779
79	79	0.556
8	8	0.621
80	80	0.111
81	81	0.295
82	82	0.105
83	83	0.193
84	84	0.424
85	85	0.0161
86	86	0.982
87	87	0.0541
88	88	0.981
89	89	0.288
9	9	0.456
90	90	0.00158
91	91	0.335
92	92	0.0306
93	93	0.533
94	94	0.136
95	95	0.947
96	96	0.174
97	97	0.673
98	98	0.287
99	99	0.778

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10606

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011341 mouse kidney- embryo E14 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000296 (mouse embryonic day 14 sample)
0011341 (mouse kidney- embryo E14 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005957
+|accession_numbers=CAGE;DRX009004;DRR009878;DRZ001303;DRZ002686;DRZ012653;DRZ014036
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:22539932..22539956,-!p1@Tcf21!2.00!255.67!Tcf21;;chr6:52190467..52190500,-!p1@Hoxa10!1.98!93.51!Hoxa10;;chr11:96143666..96143725,+!p1@Hoxb8!1.75!63.16!Hoxb8;;chr13:99124189..99124205,+!p1@Foxd1!1.74!80.23!Foxd1;;chr11:83664365..83664383,+!p1@Hnf1b!1.63!41.73!Hnf1b;;chr11:84339016..84339044,-!p1@Lhx1!1.61!40.21!Lhx1;;chr17:86087592..86087615,-!p1@Six2!1.59!38.12!Six2;;chr6:52184901..52184959,-!p2@Hoxa10!1.57!35.85!Hoxa10;;chr15:102797288..102797302,+!p1@Hoxc10!1.56!35.66!Hoxc10;;chr6:52176164..52176195,-!p1@Hoxa9!1.55!42.11!Hoxa9;;chr5:140019865..140019886,+!p1@Uncx!1.54!33.38!Uncx;;chr19:59533221..59533271,+!p1@Emx2!1.53!40.40!Emx2;;chr5:140019843..140019858,+!p2@Uncx!1.51!31.11!Uncx;;chr11:96153767..96153822,+!p1@Hoxb6!1.50!47.04!Hoxb6;;chr2:24331085..24331100,-!p1@Pax8!1.49!29.97!Pax8;;chr15:102828658..102828678,+!p1@Hoxc6!1.48!29.21!Hoxc6;;chr6:52195795..52195825,-!p1@Hoxa11!1.48!29.21!Hoxa11;;chr6:52195763..52195792,-!p2@Hoxa11!1.47!28.26!Hoxa11;;chr2:74549968..74549996,+!p1@Hoxd3!1.45!33.38!Hoxd3;;chr2:104966766..104966786,+!p1@Wt1!1.41!38.31!Wt1;;chr2:74520048..74520064,+!p1@Hoxd11!1.40!23.90!Hoxd11;;chr6:52163319..52163342,-!p1@Hoxa3!1.36!31.30!Hoxa3;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.36!27.31!Pou3f3;;chr6:52190668..52190682,-!p3@Hoxa10!1.36!21.81!Hoxa10;;chr2:74520343..74520383,+!p4@Hoxd11!1.34!20.67!Hoxd11;;chr2:74517609..74517621,+!p3@Hoxd11!1.34!20.67!Hoxd11;;chr10:119913546..119913583,-!p3@Hmga2!1.33!41.54!Hmga2;;chr8:123640063..123640077,+!p1@Foxc2!1.32!35.28!Foxc2;;chr10:119913278..119913298,-!p2@Hmga2!1.29!40.78!Hmga2;;chr2:104966874..104966907,+!p2@Wt1!1.26!17.07!Wt1;;chr10:119913310..119913366,-!p1@Hmga2!1.25!129.92!Hmga2;;chr11:96143843..96143868,+!p3@Hoxb8!1.25!16.69!Hoxb8;;chr6:52190858..52190873,-!p4@Hoxa10!1.22!15.74!Hoxa10;;chr7:19895354..19895369,-!p1@Fosb!1.21!20.67!Fosb;;chr2:74550015..74550057,+!p2@Hoxd3!1.19!14.60!Hoxd3;;chr11:101755669..101755686,-!p1@Meox1!1.18!25.23!Meox1;;chr2:9800207..9800234,-!p1@Gata3!1.17!42.11!Gata3;;chr12:3891810..3891829,+!p2@Dnmt3a!1.17!21.24!Dnmt3a;;chr2:104966465..104966479,+!p6@Wt1!1.16!13.47!Wt1;;chr2:74529970..74529997,+!p1@Hoxd10!1.15!13.28!Hoxd10;;chr11:96145450..96145517,+!p2@Hoxb7!1.14!19.35!Hoxb7;;chr5:140019816..140019825,+!p3@Uncx!1.12!12.14!Uncx;;chr11:96145393..96145407,+!p3@Hoxb7!1.07!10.81!Hoxb7;;chr11:96213183..96213188,+!p@chr11:96213183..96213188,+!1.07!10.62!Hoxb2;;chr7:77511403..77511450,-!p3@Nr2f2!1.05!22.00!Nr2f2;;chr2:74517742..74517758,+!p2@Hoxd11!1.05!10.24!Hoxd11;;chr14:22806778..22806795,-!p5@Zfp503!1.04!11.00!Zfp503;;chr10:119914001..119914078,-!p4@Hmga2!1.02!13.09!Hmga2;;chr11:96143962..96144035,+!p2@Hoxb8!1.02!9.48!Hoxb8;;chr19:59533139..59533152,+!p2@Emx2!1.01!9.29!Emx2;;chr2:104966933..104966966,+!p3@Wt1!1.00!9.10!Wt1;;chr15:102797225..102797243,+!p2@Hoxc10!1.00!9.10!Hoxc10;;chr14:22807107..22807119,-!p2@Zfp503!0.99!39.64!Zfp503;;chr1:19202352..19202354,+!p2@Tfap2b!0.98!8.54!Tfap2b;;chr11:96147952..96147967,+!p1@Hoxb7!0.97!10.43!Hoxb7;;chr2:180069370..180069409,-!p1@Gata5!0.96!9.48!Gata5;;chr11:96160360..96160397,+!p3@Hoxb6!0.96!8.16!Hoxb6;;chr15:35225845..35225867,+!p1@Osr2!0.95!20.48!Osr2;;chr2:9809357..9809371,-!p2@Gata3!0.95!7.97!Gata3;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.94!22.95!Tfcp2l1;;chr15:102797170..102797182,+!p3@Hoxc10!0.94!7.78!Hoxc10;;chr11:96132637..96132652,+!p1@Hoxb9!0.94!7.78!Hoxb9;;chr6:52190840..52190853,-!p5@Hoxa10!0.94!7.78!Hoxa10;;chr6:52184880..52184893,-!p6@Hoxa10!0.94!7.78!Hoxa10;;chr1:19199236..19199258,+!p1@Tfap2b!0.93!7.59!Tfap2b;;chr14:22807083..22807104,-!p1@Zfp503!0.92!134.28!Zfp503;;chr7:52471143..52471186,+!p1@Tead2!0.92!80.80!Tead2;;chr10:119913792..119913820,-!p5@Hmga2!0.92!12.90!Hmga2;;chr11:96160426..96160443,+!p2@Hoxb6!0.92!7.40!Hoxb6;;chr2:74536026..74536039,+!p1@Hoxd9!0.92!7.40!Hoxd9;;chr12:34642510..34642530,+!p1@Twist1!0.91!23.33!Twist1;;chr11:101646566..101646603,-!p1@Etv4!0.90!23.14!Etv4;;chr11:96132767..96132796,+!p2@Hoxb9!0.90!7.02!Hoxb9;;chr10:102491237..102491291,-!p2@Alx1!0.90!7.02!Alx1;;chr2:103123925..103123959,-!p3@Ehf!0.90!7.02!Ehf;;chr2:74513125..74513143,+!p1@Hoxd12!0.89!6.83!Hoxd12;;chr12:28027561..28027591,-!p1@Sox11!0.88!45.90!Sox11;;chr6:52195747..52195762,-!p3@Hoxa11!0.88!6.64!Hoxa11;;chr8:123640090..123640101,+!p2@Foxc2!0.87!7.21!Foxc2;;chr19:59533595..59533628,+!p6@Emx2!0.86!6.26!Emx2;;chr19:59533163..59533185,+!p3@Emx2!0.86!6.26!Emx2;;chr6:52176144..52176161,-!p2@Hoxa9!0.86!6.26!Hoxa9;;chr4:114581497..114581519,-!p2@Foxd2!0.86!6.26!Foxd2;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.85!8.16!Hoxb2;;chr19:59533429..59533470,+!p4@Emx2!0.85!6.07!Emx2;;chr4:114581524..114581551,-!p1@Foxd2!0.84!9.10!Foxd2;;chr5:134790276..134790294,-!p7@Gtf2i!0.83!13.47!Gtf2i;;chr12:3891753..3891801,+!p4@Dnmt3a!0.83!9.67!Dnmt3a;;chr9:106356211..106356242,+!p1@Pcbp4!0.81!113.61!Pcbp4;;chr7:77511234..77511302,-!p2@Nr2f2!0.81!39.26!Nr2f2;;chr11:85646303..85646329,+!p1@Tbx2!0.81!38.88!Tbx2;;chr16:14705961..14705978,+!p2@Snai2!0.81!27.31!Snai2;;chr14:17407878..17407926,-!p1@Rarb!0.81!12.90!Rarb;;chr15:102828642..102828653,+!p2@Hoxc6!0.81!5.50!Hoxc6;;chr2:152223441..152223465,-!p2@Sox12!0.80!23.52!Sox12;;chr7:19895384..19895399,-!p2@Fosb!0.80!7.78!Fosb;;chr7:108966820..108966835,+!p1@Phox2a!0.80!5.31!Phox2a;;chr2:104966662..104966673,+!p4@Wt1!0.80!5.31!Wt1;;chr6:88148650..88148669,+!p1@Gata2!0.78!46.28!Gata2;;chr12:86814833..86814846,+!p1@Fos!0.77!125.75!Fos;;chr4:122911086..122911112,+!p1@Heyl!0.77!63.35!Heyl;;chr12:12948633..12948651,-!p1@Mycn!0.77!51.02!Mycn;;chr15:102301130..102301147,+!p3@Pcbp2!0.77!16.31!Pcbp2;;chr13:31898729..31898761,+!p1@Foxc1!0.77!12.90!Foxc1;;chr11:18918434..18918489,-!p3@Meis1!0.77!8.16!Meis1;;chr12:37835120..37835133,+!p2@Meox2!0.77!7.21!Meox2;;chr10:102491405..102491416,-!p1@Alx1!0.77!4.93!Alx1;;chr2:74520075..74520087,+!p6@Hoxd11!0.77!4.93!Hoxd11;;chr2:74536050..74536065,+!p2@Hoxd9!0.77!4.93!Hoxd9;;chr2:168032254..168032259,-!p6@Adnp!0.77!4.93!Adnp;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.76!8.54!Hoxb2;;chr6:52190760..52190767,-!p9@Hoxa10!0.76!4.74!Hoxa10;;chr11:101645830..101645881,-!p2@Etv4!0.75!8.91!Etv4;;chr15:61816932..61816952,+!p2@Myc!0.74!41.35!Myc;;chr14:98568971..98569025,-!p1@Dach1!0.74!38.88!Dach1;;chr10:50614546..50614568,+!p@chr10:50614546..50614568,+!0.74!4.55!Sim1;;chr11:96160068..96160084,+!p6@Hoxb6!0.74!4.55!Hoxb6;;chr7:77505617..77505632,-!p1@Nr2f2!0.73!228.36!Nr2f2;;chr7:77511311..77511352,-!p4@Nr2f2!0.73!9.48!Nr2f2;;chr2:115890469..115890485,-!p7@Meis2!0.73!7.40!Meis2;;chr11:18918406..18918431,-!p6@Meis1!0.73!6.07!Meis1;;chr11:96145362..96145389,+!p4@Hoxb7!0.73!4.36!Hoxb7;;chr11:34108085..34108092,-!p1@Foxi1!0.73!4.36!Foxi1;;chr10:126778916..126778974,-!p1@Gli1!0.72!10.24!Gli1;;chr1:137155026..137155042,-!p1@Elf3!0.71!26.74!Elf3;;chr12:37835248..37835260,+!p4@Meox2!0.71!4.17!Meox2;;chr2:167363692..167363710,+!p1@Snai1!0.70!55.00!Snai1;;chr2:74542680..74542705,+!p6@Hoxd8!0.70!3.98!Hoxd8;;chr2:74549945..74549965,+!p4@Hoxd3!0.70!3.98!Hoxd3;;chr9:71743854..71743909,-!p1@Tcf12!0.69!35.47!Tcf12;;chr1:170361730..170361769,-!p7@Pbx1!0.69!9.67!Pbx1;;chr18:76219118..76219155,+!p1@Zbtb7c!0.69!7.40!Zbtb7c;;chr14:52935860..52935874,-!p3@Sall2!0.69!5.88!Sall2;;chr10:12810631..12810649,+!p1@Plagl1!0.68!114.37!Plagl1;;chr16:14705925..14705951,+!p1@Snai2!0.68!30.16!Snai2;;chr11:99092233..99092273,-!p2@Smarce1!0.68!20.67!Smarce1;;chr13:31898637..31898653,+!p2@Foxc1!0.68!7.21!Foxc1;;chr13:40829137..40829205,-!p1@Tfap2a!0.68!4.36!Tfap2a;;chr3:8666963..8666978,-!p1@Hey1!0.67!27.50!Hey1;;chr8:59799772..59799789,+!p1@Hand2!0.67!11.76!Hand2;;chr11:3189683..3189744,+!p2@Patz1!0.66!7.97!Patz1;;chr7:77511622..77511657,-!p5@Nr2f2!0.66!4.74!Nr2f2;;chr13:31898767..31898785,+!p4@Foxc1!0.66!4.55!Foxc1;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.66!3.60!Foxl1;;chr2:74536071..74536083,+!p4@Hoxd9!0.66!3.60!Hoxd9;;chr2:115891534..115891589,-!p1@Meis2!0.65!57.28!Meis2;;chr19:7342725..7342784,+!p1@Rcor2!0.65!16.50!Rcor2;;chr7:25292076..25292114,+!p4@Zfp428!0.65!10.62!Zfp428;;chr19:5560600..5560617,-!p1@Ovol1!0.65!4.36!Ovol1;;chr16:4559608..4559681,-!p1@Tfap4!0.64!32.62!Tfap4;;chr14:98568761..98568814,-!p2@Dach1!0.64!26.93!Dach1;;chr14:22807216..22807231,-!p3@Zfp503!0.64!6.26!Zfp503;;chr13:72101161..72101177,-!p2@Irx1!0.64!4.93!Irx1;;chr11:85646263..85646278,+!p2@Tbx2!0.63!9.48!Tbx2;;chr3:29912058..29912071,-!p6@Mecom!0.63!3.79!Mecom;;chr15:102797183..102797205,+!p4@Hoxc10!0.63!3.22!Hoxc10;;chr15:102820964..102821006,+!p1@Hoxc8!0.63!3.22!Hoxc8;;chr2:104966436..104966455,+!p7@Wt1!0.63!3.22!Wt1;;chr2:163372884..163372904,+!p1@Hnf4a!0.63!3.22!Hnf4a;;chr17:27693788..27693803,+!p3@Hmga1,p4@Hmga1-rs1!0.61!16.31!Hmga1;;chr2:152223783..152223812,-!p4@Sox12!0.61!7.97!Sox12;;chr5:138187583..138187602,+!p6@Tsc22d4!0.61!6.26!Tsc22d4;;chr2:168032516..168032525,-!p5@Adnp!0.61!5.31!Adnp;;chr13:78339476..78339515,-!p1@Nr2f1!0.61!5.12!Nr2f1;;chr2:74543397..74543435,+!p2@Hoxd8!0.61!3.03!Hoxd8;;chr2:24331116..24331125,-!p2@Pax8!0.61!3.03!Pax8;;chr19:44831390..44831414,+!p1@Pax2!0.61!3.03!Pax2;;chr15:102301149..102301221,+!p2@Pcbp2!0.60!133.34!Pcbp2;;chr13:30077847..30077906,-!p1@E2f3!0.60!27.69!E2f3;;chr11:74981654..74981658,-!p1@Hic1!0.60!14.04!Hic1;;chr11:85646427..85646451,+!p4@Tbx2!0.60!5.69!Tbx2;;chr13:78339428..78339466,-!p2@Nr2f1!0.60!4.36!Nr2f1;;chr4:135699731..135699747,+!p1@Id3!0.59!403.99!Id3;;chr12:37835141..37835194,+!p1@Meox2!0.59!10.43!Meox2;;chr8:94325321..94325366,-!p1@Irx3!0.59!7.97!Irx3;;chr2:74542918..74542971,+!p1@Hoxd8!0.59!4.74!Hoxd8;;chr2:156666727..156666753,+!p2@Tgif2!0.59!4.55!Tgif2;;chr2:17976799..17976829,+!p5@Mllt10!0.59!3.79!Mllt10;;chr11:101646480..101646496,-!p4@Etv4!0.59!3.79!Etv4;;chr11:96213264..96213282,+!p@chr11:96213264..96213282,+!0.59!3.79!Hoxb2;;chr10:79896129..79896163,-!p6@Tcf3!0.58!4.74!Tcf3;;chr13:78339382..78339420,-!p3@Nr2f1!0.58!3.41!Nr2f1;;chr2:103264213..103264233,+!p1@Elf5!0.58!2.85!Elf5;;chr14:52935876..52935928,-!p1@Sall2!0.57!27.31!Sal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az;;chr4:150503457..150503498,-!p3@Camta1!0.47!2.28!Camta1;;chr2:130120884..130120972,+!p1@Ebf4!0.46!14.79!Ebf4;;chrX:98449898..98449913,+!p2@Foxo4!0.46!7.78!Foxo4;;chr7:25372631..25372684,-!p1@Zfp575!0.46!7.40!Zfp575;;chr6:72185232..72185272,-!p1@Atoh8!0.46!6.83!Atoh8;;chr18:65741935..65741964,+!p2@Zfp532!0.46!6.64!Zfp532;;chr12:9581284..9581303,+!p2@Osr1!0.46!4.36!Osr1;;chr6:128312772..128312792,+!p2@Foxm1!0.46!3.79!Foxm1;;chr13:31898529..31898542,+!p5@Foxc1!0.46!2.47!Foxc1;;chr1:93698095..93698113,+!p3@Twist2!0.46!2.47!Twist2;;chr14:69808725..69808748,+!p1@Nkx3-1!0.46!1.90!Nkx3-1;;chr12:37835219..37835230,+!p5@Meox2!0.46!1.90!Meox2;;chr2:74560109..74560131,+!p1@Hoxd4!0.46!1.90!Hoxd4;;chr2:74530022..74530033,+!p3@Hoxd10!0.46!1.90!Hoxd10;;chr2:74529942..74529953,+!p4@Hoxd10!0.46!1.90!Hoxd10;;chr11:96164821..96164865,+!p1@Hoxb5!0.46!1.90!Hoxb5;;chr11:57645506..57645523,-!p1@Hand1!0.46!1.90!Hand1;;chr13:58503810..58503833,-!p2@Hnrnpk!0.45!134.10!Hnrnpk;;chr1:170362242..170362256,-!p3@Pbx1!0.45!18.02!Pbx1;;chr14:76814736..76814781,+!p4@Tsc22d1!0.45!14.23!Tsc22d1;;chr7:134169741..134169760,-!p10@Maz!0.45!7.02!Maz;;chr2:30700881..30700916,+!p1@Prrx2!0.45!4.17!Prrx2;;chr1:170361777..170361797,-!p10@Pbx1!0.45!3.79!Pbx1;;chr2:151969288..151969294,+!p1@Tcf15!0.45!3.22!Tcf15;;chr10:86956396..86956411,-!p1@Ascl1!0.45!3.22!Ascl1;;chr4:154010228..154010244,-!p4@Prdm16!0.45!2.85!Prdm16;;chr13:78339134..78339185,-!p5@Nr2f1!0.45!2.47!Nr2f1;;chr7:52472041..52472065,+!p2@Tead2!0.45!2.28!Tead2;;chr7:134170081..134170122,-!p2@Maz!0.44!44.95!Maz;;chr7:25292331..25292421,+!p1@Zfp428!0.44!17.26!Zfp428;;chr1:170361826..170361844,-!p9@Pbx1!0.44!4.93!Pbx1;;chr17:37139455..37139469,+!p3@Zfp57!0.44!3.22!Zfp57;;chr15:81702313..81702346,-!p1@Phf5a!0.43!73.59!Phf5a;;chr16:22439681..22439698,-!p1@Etv5!0.43!41.92!Etv5;;chrX:137077151..137077227,-!p2@Tsc22d3!0.43!16.69!Tsc22d3;;chr17:48061584..48061601,-!p2@Foxp4!0.43!15.17!Foxp4;;chr13:58503894..58503895,-!p4@Hnrnpk!0.43!7.59!Hnrnpk;;chr14:52634234..52634281,-!p3@Zfp219!0.43!6.07!Zfp219;;chr3:90097275..90097302,+!p2@Gatad2b!0.43!4.93!Gatad2b;;chr8:94325814..94325839,-!p2@Irx3!0.43!4.36!Irx3;;chr11:18918820..18918831,-!p4@Meis1!0.43!3.98!Meis1;;chr14:56443781..56443800,+!p3@Nfatc4!0.43!2.47!Nfatc4;;chr18:76219161..76219176,+!p4@Zbtb7c!0.43!2.47!Zbtb7c;;chr17:86087581..86087588,-!p2@Six2!0.43!1.71!Six2;;chr11:96153467..96153473,+!p10@Hoxb6!0.43!1.71!Hoxb6;;chr10:119913766..119913779,-!p10@Hmga2!0.43!1.71!Hmga2;;chr3:29912169..29912182,-!p12@Mecom!0.43!1.71!Mecom;;chr2:9809374..9809396,-!p4@Gata3!0.43!1.71!Gata3;;chr2:74565306..74565327,+!p2@Hoxd4!0.43!1.71!Hoxd4;;chr2:9800094..9800108,-!p3@Gata3!0.43!1.71!Gata3;;chr6:52161666..52161711,-!p1@Hoxa6!0.43!1.71!Hoxa6;;chr19:59534008..59534046,+!p7@Emx2!0.43!1.71!Emx2;;chr15:102821007..102821021,+!p2@Hoxc8!0.43!1.71!Hoxc8;;chr11:69393894..69393921,+!p1@Trp53!0.42!218.50!Trp53;;chr5:134790507..134790546,-!p1@Gtf2i!0.42!58.23!Gtf2i;;chr17:37139472..37139514,+!p1@Zfp57!0.42!15.55!Zfp57;;chr15:75447105..75447159,+!p1@Zfp41!0.42!8.91!Zfp41;;chr10:79896347..79896358,-!p2@Tcf3!0.42!7.97!Tcf3;;chr9:21420744..21420755,+!p3@Smarca4!0.42!6.26!Smarca4;;chr14:17407970..17408015,-!p2@Rarb!0.42!5.69!Rarb;;chr16:4559721..4559747,-!p3@Tfap4!0.42!4.55!Tfap4;;chr7:87171256..87171280,+!p4@Zfp710!0.42!3.98!Zfp710;;chr17:35031589..35031630,+!p2@Zbtb12!0.42!3.60!Zbtb12;;chr12:37835203..37835218,+!p3@Meox2!0.42!2.09!Meox2;;chr15:99532709..99532743,+!p1@Smarcd1!0.41!60.88!Smarcd1;;chr15:76287876..76287894,+!p1@Scx!0.41!12.33!Scx;;chr5:147760305..147760324,+!p2@Gtf3a!0.41!10.62!Gtf3a;;chr1:120949949..120950000,-!p1@Gli2!0.41!9.67!Gli2;;chr17:71200558..71200572,-!p4@Tgif1!0.41!5.12!Tgif1;;chr4:128483534..128483613,-!p1@Zfp362!0.40!15.17!Zfp362;;chr14:64562503..64562524,+!p1@Sox7!0.40!12.90!Sox7;;chr9:96159665..96159680,+!p3@Tfdp2!0.40!9.67!Tfdp2;;chr16:55966525..55966543,+!p5@Rpl24,p5@Zbtb11!0.40!7.21!Zbtb11;;chr9:32349240..32349276,-!p2@Fli1!0.40!4.74!Fli1;;chr7:144506077..144506128,-!p1@Ebf3!0.40!4.55!Ebf3;;chr9:87626083..87626108,-!p1@Tbx18!0.40!4.36!Tbx18;;chr11:85646341..85646352,+!p3@Tbx2!0.40!3.79!Tbx2;;chr11:70043257..70043263,-!p1@Bcl6b!0.40!3.22!Bcl6b;;chr12:58646974..58647003,-!p1@Foxa1!0.40!2.28!Foxa1;;chr15:102865088..102865107,+!p1@Hoxc4!0.40!2.28!Hoxc4;;chr10:127095407..127095440,+!p3@Stat6!0.40!2.09!Stat6;;chr11:96132523..96132538,+!p3@Hoxb9!0.40!1.52!Hoxb9;;chr10:119913954..119913972,-!p8@Hmga2!0.40!1.52!Hmga2;;chr11:96180069..96180089,+!p3@Hoxb4!0.40!1.52!Hoxb4;;chr11:96145537..96145556,+!p6@Hoxb7!0.40!1.52!Hoxb7;;chr11:96160451..96160462,+!p5@Hoxb6!0.40!1.52!Hoxb6;;chr2:74542974..74542986,+!p5@Hoxd8!0.40!1.52!Hoxd8;;chr2:74543235..74543246,+!p7@Hoxd8!0.40!1.52!Hoxd8;;chr2:104966909..104966920,+!p8@Wt1!0.40!1.52!Wt1;;chr2:104966983..104966990,+!p11@Wt1!0.40!1.52!Wt1;;chr1:136186574..136186592,+!p1@Myog!0.40!1.52!Myog;;chr8:91568074..91568094,-!p1@Sall1!0.40!1.52!Sall1;;chr17:27693558..27693580,+!p1@Hmga1-rs1,p1@Hmga1!0.39!103.94!Hmga1;;chr13:96095213..960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947213,-!p2@Mycn!0.29!0.95!Mycn;;chr12:12947182..12947194,-!p3@Mycn!0.29!0.95!Mycn;;chr12:77278238..77278252,-!p1@Esr2!0.29!0.95!Esr2;;chr12:12947406..12947418,-!p5@Mycn!0.29!0.95!Mycn;;chr14:17407671..17407684,-!p7@Rarb!0.29!0.95!Rarb;;chr5:120130377..120130432,+!p10@Tbx3!0.29!0.95!Tbx3;;chr7:135019127..135019137,-!p6@Zfp668!0.29!0.95!Zfp668;;chr11:70043718..70043743,-!p3@Bcl6b!0.29!0.95!Bcl6b;;chr10:126778639..126778670,-!p3@Gli1!0.29!0.95!Gli1;;chr7:4966247..4966286,-!p1@Fiz1!0.28!32.81!Fiz1;;chr17:35653725..35653780,-!p1@Tcf19!0.28!28.83!Tcf19;;chr11:18918959..18918976,-!p2@Meis1!0.28!22.76!Meis1;;chr11:4604645..4604705,+!p1@Zmat5!0.28!22.00!Zmat5;;chr8:112229478..112229536,+!p1@Zfp821!0.28!14.41!Zfp821;;chr3:51081199..51081228,-!p3@Elf2!0.28!5.50!Elf2;;chr15:102034446..102034506,+!p2@Zfp740!0.28!5.31!Zfp740;;chr1:135320962..135320981,-!p2@Sox13!0.28!5.12!Sox13;;chr7:16986617..16986632,+!p2@Zc3h4!0.28!4.17!Zc3h4;;chr10:75495410..75495444,+!p2@Zfp280b!0.28!3.60!Zfp280b;;chr3:30408603..30408668,-!p1@Mecom!0.28!3.22!Mecom;;chr9:121668850..121668885,+!p2@Zfp651!0.28!2.47!Zfp651;;chr14:56443698..56443726,+!p2@Nfatc4!0.28!2.47!Nfatc4;;chr15:61818965..61819046,+!p3@Myc!0.28!2.28!Myc;;chr11:44430989..44431015,+!p4@Ebf1!0.28!2.28!Ebf1;;chr7:134376558..134376587,+!p2@Zfp553!0.28!2.09!Zfp553;;chr11:102177974..102177992,-!p17@Ubtf!0.28!1.33!Ubtf;;chr6:124662297..124662371,+!p1@Phb2!0.27!330.59!Phb2;;chr11:80196811..80196838,+!p1@Zfp207!0.27!292.66!Zfp207;;chr10:75384307..75384370,-!p1@Smarcb1!0.27!130.68!Smarcb1;;chr17:3557742..3557775,-!p1@Tfb1m!0.27!23.14!Tfb1m;;chr9:113840108..113840184,+!p2@Ubp1!0.27!14.98!Ubp1;;chr2:165213745..165213815,-!p1@Zfp334!0.27!14.41!Zfp334;;chr13:55431084..55431137,-!p1@Mxd3!0.27!12.52!Mxd3;;chr2:126501197..126501245,-!p1@Gabpb1!0.27!12.33!Gabpb1;;chr8:107694661..107694713,+!p2@Cbfb!0.27!10.62!Cbfb;;chr10:5959061..5959104,+!p2@Zbtb2!0.27!6.07!Zbtb2;;chr8:107694596..107694619,+!p4@Cbfb!0.27!4.17!Cbfb;;chr6:124959016..124959061,+!p3@Zfp384!0.27!3.79!Zfp384;;chr10:30562571..30562597,-!p1@Hey2!0.27!3.22!Hey2;;chr5:120120667..120120685,+!p3@Tbx3!0.27!2.47!Tbx3;;chr2:34227524..34227547,-!p2@Pbx3!0.27!2.47!Pbx3;;chr7:134169999..134170010,-!p13@Maz!0.27!2.09!Maz;;chr10:107769719..107769745,+!p4@Pawr!0.27!1.71!Pawr;;chr9:21420812..21420815,+!p6@Smarca4!0.27!1.71!Smarca4;;chr12:9581243..9581254,+!p4@Osr1!0.27!1.52!Osr1;;chr15:81575472..81575481,+!p4@Zc3h7b!0.27!1.33!Zc3h7b;;chr7:31741761..31741800,-!p2@LOC100504922,p2@Usf2!0.26!9.67!Usf2;;chr11:62602904..62602945,-!p1@Zfp286!0.26!7.02!Zfp286;;chr19:28754692..28754757,-!p1@Glis3!0.26!6.07!Glis3;;chrX:70587926..70587945,+!p2@Zfp275!0.26!4.74!Zfp275;;chr4:151401710..151401733,-!p2@Zbtb48!0.26!4.36!Zbtb48;;chr13:22036953..22037009,+!p1@Zfp184!0.26!3.60!Zfp184;;chr3:135354903..135354945,-!p7@Nfkb1!0.26!3.03!Nfkb1;;chr2:34227446..34227511,-!p1@Pbx3!0.26!3.03!Pbx3;;chr7:56137011..56137041,-!p2@E2f8!0.26!2.47!E2f8;;chr6:38204274..38204327,-!p3@D630045J12Rik!0.26!2.47!D630045J12Rik;;chr11:3190303..3190351,+!p3@Patz1!0.26!2.47!Patz1;;chr13:96095124..96095144,+!p3@Zbed3!0.26!2.47!Zbed3;;chr13:96095097..96095114,+!p5@Zbed3!0.26!2.09!Zbed3;;chr9:106356265..106356276,+!p4@Pcbp4!0.26!1.90!Pcbp4;;chr11:98789140..98789168,+!p5@Rara!0.26!1.90!Rara;;chr2:91864449..91864492,-!p3@Creb3l1!0.26!1.90!Creb3l1;;chr13:96094769..96094829,+!p4@Zbed3!0.26!1.52!Zbed3;;chr7:17642053..17642066,-!p2@Hif3a!0.26!1.52!Hif3a;;chr15:37162834..37162849,+!p2@Grhl2!0.26!1.14!Grhl2;;chr13:29045174..29045188,-!p7@Sox4!0.26!1.14!Sox4;;chr13:56804344..56804473,+!p1@Smad5!0.25!48.55!Smad5;;chr6:117791192..117791269,+!p1@Zfp637!0.25!25.42!Zfp637;;chr6:128312937..128313076,+!p1@Foxm1!0.25!21.62!Foxm1;;chr5:34163023..34163090,+!p2@Whsc1!0.25!9.67!Whsc1;;chr2:181194069..181194144,-!p1@Zbtb46!0.25!8.35!Zbtb46;;chr15:76709732..76709764,+!p1@Zfp7!0.25!7.02!Zfp7;;chr8:81923398..81923409,-!p4@Smad1!0.25!3.22!Smad1;;chr6:116578939..116578952,-!p2@Zfp422!0.25!3.03!Zfp422;;chr8:87225702..87225726,+!p3@Lyl1!0.25!2.47!Lyl1;;chr5:120121169..120121171,+!p4@Tbx3!0.25!2.09!Tbx3;;chr7:30638614..30638628,-!p2@Zfp940!0.25!1.71!Zfp940;;chr2:162880306..162880319,+!p3@Mybl2!0.25!1.52!Mybl2;;chr10:80809447..80809515,-!p5@Hmg20b!0.25!1.14!Hmg20b;;chr11:96132544..96132553,+!p6@Hoxb9!0.25!0.76!Hoxb9;;chr9:24578720..24578735,-!p1@Tbx20!0.25!0.76!Tbx20;;chr3:29912310..29912321,-!p23@Mecom!0.25!0.76!Mecom;;chr4:150503544..150503561,-!p8@Camta1!0.25!0.76!Camta1;;chr3:29911926..29911942,-!p13@Mecom!0.25!0.76!Mecom;;chr3:130813586..130813604,+!p7@Lef1!0.25!0.76!Lef1;;chr3:29912271..29912291,-!p16@Mecom!0.25!0.76!Mecom;;chr2:74543143..74543158,+!p9@Hoxd8!0.25!0.76!Hoxd8;;chr6:52183482..52183486,-!p10@Hoxa10!0.25!0.76!Hoxa10;;chr6:88148324..88148328,+!p3@Gata2!0.25!0.76!Gata2;;chr5:115421065..115421088,-!p1@Hnf1a!0.25!0.76!Hnf1a;;chr6:52158644..52158677,-!p2@Hoxa6!0.25!0.76!Hoxa6;;chr6:85137505..85137517,+!p2@Emx1!0.25!0.76!Emx1;;chr1:169528823..169528860,+!p5@Rxrg!0.25!0.76!Rxrg;;chr19:59534052..59534083,+!p8@Emx2!0.25!0.76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@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011341
 |is_obsolete=
+|library_id=CNhs10606
+|library_id_phase_based=2:CNhs10606
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;411
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;411
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/kidney%252c%2520embryo%2520E14.CNhs10606.411-4I9.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/kidney%252c%2520embryo%2520E14.CNhs10606.411-4I9.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/kidney%252c%2520embryo%2520E14.CNhs10606.411-4I9.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/kidney%252c%2520embryo%2520E14.CNhs10606.411-4I9.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/kidney%252c%2520embryo%2520E14.CNhs10606.411-4I9.mm9.nobarcode.rdna.fa.gz
 |name=kidney, embryo E14
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10606,LSID654,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.0177292598321035,0,0,0,0,0,-0.570764676537707,0,0,0,0,0.160845510961369,0,0,0,0,0,0,0.00373061764345689,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.418752783464148,0,0,0,0.24518475135791,0,-0.139487721065885,0,-0.202907513775371,-0.468865509863558,0.245477218603917,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,-0.00192807751944503,-0.145748560213918,-0.115026688813355,-0.158091042771083,-0.0663821023609715,0,-0.0780086007519514,-0.0294170999679055,0,0,0,0,-0.230994980909835,-0.0110164454100559,-0.0788315948399074,0,0,0,0,0,0,-0.0567576797734015,-0.275053764368594,-0.0493986422894283,0,0,0,0,0
@@ Line 62: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 82: / Line 97: @@
 |top_motifs=NANOG{mouse}:2.14194726789;RXR{A,B,G}:1.78061793163;NFY{A,B,C}:1.41711092302;TOPORS:1.27134209346;PAX1,9:1.24841935995;GFI1:1.19134869478;TFAP2{A,C}:1.17369333731;POU2F1..3:1.15762735141;ZIC1..3:1.08641350804;LEF1_TCF7_TCF7L1,2:1.03832403441;E2F1..5:1.03564646616;PBX1:0.99074167842;PAX6:0.96213591538;FOXQ1:0.952662918326;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.92380061005;ZNF143:0.903790739377;VSX1,2:0.898919005806;ELK1,4_GABP{A,B1}:0.788566868879;ESR1:0.787148769489;PRRX1,2:0.784592069268;SOX17:0.781927379489;PATZ1:0.77948221442;YY1:0.76102402852;ZNF423:0.754441545812;SOX2:0.750718346905;TFDP1:0.749279503552;EN1,2:0.738147686394;IKZF1:0.732549668768;GZF1:0.726804092001;SOX{8,9,10}:0.709195761829;RREB1:0.681436551311;XCPE1{core}:0.652232898715;HSF1,2:0.6374599653;HMX1:0.609125227828;HIF1A:0.608608617807;HOXA9_MEIS1:0.594516317528;EP300:0.592736730681;HES1:0.539012778672;STAT1,3:0.527362779013;ADNP_IRX_SIX_ZHX:0.50871433279;MYBL2:0.501231708004;MZF1:0.491212540606;UFEwm:0.485542833397;BREu{core}:0.47856297974;NRF1:0.465084370506;MAZ:0.464856871717;SRF:0.452085275877;ZNF384:0.430298335358;PAX5:0.425375792247;TFCP2:0.422968313043;SPZ1:0.411952821952;ONECUT1,2:0.410928894014;NANOG:0.39674924488;GFI1B:0.38614179807;PDX1:0.369189011753;MED-1{core}:0.366772247755;ZNF238:0.287369013936;ELF1,2,4:0.283002932083;TP53:0.268374337237;HNF1A:0.26537690829;PAX8:0.256301212525;DBP:0.236252460645;ATF2:0.232600764547;GTF2I:0.23249003761;ALX4:0.229407678852;NKX3-1:0.21116164548;SOX5:0.209642809452;GTF2A1,2:0.192467876785;MYB:0.179130698586;HIC1:0.170873584768;HOX{A5,B5}:0.144605248977;SPIB:0.14308763332;HAND1,2:0.13777149246;TEAD1:0.132883560659;RFX1:0.129860916642;ZBTB6:0.120375061965;IKZF2:0.103529541092;TFAP4:0.0978450422221;STAT5{A,B}:0.0785782395855;KLF4:0.0378818635342;MYOD1:0.0286521488259;MTE{core}:0.0262493536327;RORA:0.0229579036246;SNAI1..3:-0.00648403861583;NFIX:-0.022913952487;FOXM1:-0.0263135390561;NFE2L1:-0.0391801539899;TFAP2B:-0.0416046189164;TBP:-0.0437997179007;NFKB1_REL_RELA:-0.0469569257686;FOSL2:-0.0475223976128;FOX{I1,J2}:-0.048064098696;ATF4:-0.0584096364026;GCM1,2:-0.0696465856224;OCT4_SOX2{dimer}:-0.0712082871229;CUX2:-0.0732923594074;ETS1,2:-0.0981928614488;HBP1_HMGB_SSRP1_UBTF:-0.106692557324;PPARG:-0.107331385469;NKX2-3_NKX2-5:-0.118488442331;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.126850919512;HNF4A_NR2F1,2:-0.127255388592;SP1:-0.130203981235;bHLH_family:-0.140977762909;GATA4:-0.158233576984;TLX1..3_NFIC{dimer}:-0.15949414042;RXRA_VDR{dimer}:-0.163636197638;EGR1..3:-0.176450024431;FOXD3:-0.180566875835;RUNX1..3:-0.181611023034;TLX2:-0.182763154197;AHR_ARNT_ARNT2:-0.191795895862;REST:-0.201334343483;BACH2:-0.201817660265;ALX1:-0.217989976642;FOXL1:-0.218466631383;NKX2-1,4:-0.218779830731;ZEB1:-0.224245615851;JUN:-0.24544247134;PRDM1:-0.267606127963;SREBF1,2:-0.277317448781;PITX1..3:-0.296147979771;NR1H4:-0.306245136291;ZFP161:-0.315252068757;PAX4:-0.322565005395;RFX2..5_RFXANK_RFXAP:-0.327320469645;SPI1:-0.336870538678;ATF6:-0.339675782564;ZBTB16:-0.342240636073;CRX:-0.349743501631;FOXO1,3,4:-0.368908527997;MTF1:-0.371168339297;LHX3,4:-0.384472340895;NR5A1,2:-0.386155667446;EBF1:-0.389179174642;CDX1,2,4:-0.390925344652;CDC5L:-0.400720644668;MEF2{A,B,C,D}:-0.407974983073;GATA6:-0.416085316641;GLI1..3:-0.428099871982;BPTF:-0.429568655189;T:-0.43378423016;NFATC1..3:-0.452478021986;TBX4,5:-0.465533594118;DMAP1_NCOR{1,2}_SMARC:-0.470160931578;POU5F1:-0.476731421828;NFE2:-0.483423599921;NHLH1,2:-0.486379379531;AIRE:-0.506593476791;FOXP3:-0.512181797538;LMO2:-0.512822196523;ESRRA:-0.521159845516;ZNF148:-0.524463639789;ATF5_CREB3:-0.53888471287;FOS_FOS{B,L1}_JUN{B,D}:-0.563093256107;FOXN1:-0.573508269134;HLF:-0.575811718865;HMGA1,2:-0.616576370392;MYFfamily:-0.617838323668;RBPJ:-0.62175907686;CREB1:-0.626015597352;NR6A1:-0.635273136254;TEF:-0.636834063067;ARID5B:-0.640038653777;FOXA2:-0.649444099183;NFIL3:-0.657675529259;IRF7:-0.684751403434;TGIF1:-0.720156683725;POU1F1:-0.73563399399;SMAD1..7,9:-0.747417222738;HOX{A4,D4}:-0.758208930638;CEBPA,B_DDIT3:-0.775870780446;POU3F1..4:-0.797968404073;MAFB:-0.825621705586;FOX{D1,D2}:-0.853977218634;NKX3-2:-0.870023018565;POU6F1:-0.908824247472;NR3C1:-0.92008889953;AR:-0.926855450528;PAX2:-0.959188241746;EVI1:-1.05017136743;FOX{F1,F2,J1}:-1.05713201754;NKX6-1,2:-1.09155764059;TAL1_TCF{3,4,12}:-1.25802808107;IRF1,2:-1.28188929419;STAT2,4,6:-1.3032938027;FOXP1:-1.35462209281;NKX2-2,8:-1.35557074419;NFE2L2:-1.39830830177
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:411-4I9;search_select_hide=table117:411-4I9
 }}

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FF:411-4I9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:16, 4 June 2020

CNhs10606

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0