FF:639-21E3: Difference between revisions

Latest revision as of 19:18, 4 June 2020

Name:	heart, neonate N00
Species:	Mouse (Mus musculus)
Library ID:	CNhs11213
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	heart
dev stage	0 day neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005147

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11213		CAGE		DRX008979		DRR009853

Accession ID Mm9

Library id		BAM		CTSS
CNhs11213		DRZ001278		DRZ002661

Accession ID Mm10

Library id		BAM		CTSS
CNhs11213		DRZ012628		DRZ014011

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11213

0	0
1	0
10	0.458
100	0
1000	0.208
1001	0.435
1002	0.24
1003	-0.0122
1004	0
1005	-0.0575
1006	0.395
1007	0.0651
1008	0
1009	0.173
101	-0.0248
1010	0
1011	-0.0164
1012	0.0799
1013	-0.2
1014	0.451
1015	-0.0108
1016	0.159
1017	0
1018	0
1019	0
102	0
1020	0
1021	0.0817
1022	0.756
1023	0
1024	0.259
1025	0
1026	0
1027	0
1028	0.048
1029	0.204
103	0.13
1030	0
1031	0.185
1032	0.0948
1033	-0.0273
1034	0
1035	0.618
1036	-0.185
1037	0
1038	0.193
1039	0.386
104	0
1040	0.164
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11213

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.034
MA0003.1	MA0003.1	0.733
MA0004.1	MA0004.1	0.206
MA0006.1	MA0006.1	0.414
MA0007.1	MA0007.1	0.941
MA0009.1	MA0009.1	0.757
MA0014.1	MA0014.1	0.652
MA0017.1	MA0017.1	0.0309
MA0018.2	MA0018.2	0.173
MA0019.1	MA0019.1	0.808
MA0024.1	MA0024.1	0.164
MA0025.1	MA0025.1	0.455
MA0027.1	MA0027.1	0.643
MA0028.1	MA0028.1	0.0757
MA0029.1	MA0029.1	0.953
MA0030.1	MA0030.1	0.633
MA0031.1	MA0031.1	0.854
MA0035.2	MA0035.2	0.237
MA0038.1	MA0038.1	0.458
MA0039.2	MA0039.2	0.0441
MA0040.1	MA0040.1	0.227
MA0041.1	MA0041.1	0.478
MA0042.1	MA0042.1	0.623
MA0043.1	MA0043.1	0.225
MA0046.1	MA0046.1	2.29514e-15
MA0047.2	MA0047.2	0.818
MA0048.1	MA0048.1	0.0873
MA0050.1	MA0050.1	0.0872
MA0051.1	MA0051.1	0.145
MA0052.1	MA0052.1	9.60146e-27
MA0055.1	MA0055.1	0.00528
MA0057.1	MA0057.1	0.793
MA0058.1	MA0058.1	0.234
MA0059.1	MA0059.1	0.18
MA0060.1	MA0060.1	0.0012
MA0061.1	MA0061.1	0.178
MA0062.2	MA0062.2	2.41688e-5
MA0065.2	MA0065.2	0.819
MA0066.1	MA0066.1	0.781
MA0067.1	MA0067.1	0.845
MA0068.1	MA0068.1	0.247
MA0069.1	MA0069.1	0.321
MA0070.1	MA0070.1	0.995
MA0071.1	MA0071.1	0.438
MA0072.1	MA0072.1	0.587
MA0073.1	MA0073.1	0.946
MA0074.1	MA0074.1	0.446
MA0076.1	MA0076.1	0.015
MA0077.1	MA0077.1	0.976
MA0078.1	MA0078.1	0.95
MA0079.2	MA0079.2	0.397
MA0080.2	MA0080.2	0.0117
MA0081.1	MA0081.1	0.936
MA0083.1	MA0083.1	4.14744e-13
MA0084.1	MA0084.1	0.97
MA0087.1	MA0087.1	0.388
MA0088.1	MA0088.1	0.09
MA0090.1	MA0090.1	2.97719e-4
MA0091.1	MA0091.1	0.965
MA0092.1	MA0092.1	0.372
MA0093.1	MA0093.1	0.195
MA0099.2	MA0099.2	2.95202e-4
MA0100.1	MA0100.1	0.585
MA0101.1	MA0101.1	0.349
MA0102.2	MA0102.2	0.0205
MA0103.1	MA0103.1	3.41365e-5
MA0104.2	MA0104.2	0.0749
MA0105.1	MA0105.1	0.241
MA0106.1	MA0106.1	0.805
MA0107.1	MA0107.1	0.453
MA0108.2	MA0108.2	0.979
MA0111.1	MA0111.1	0.582
MA0112.2	MA0112.2	0.0204
MA0113.1	MA0113.1	0.325
MA0114.1	MA0114.1	0.00154
MA0115.1	MA0115.1	0.601
MA0116.1	MA0116.1	0.0556
MA0117.1	MA0117.1	0.836
MA0119.1	MA0119.1	0.12
MA0122.1	MA0122.1	0.583
MA0124.1	MA0124.1	0.705
MA0125.1	MA0125.1	0.443
MA0131.1	MA0131.1	0.809
MA0135.1	MA0135.1	0.29
MA0136.1	MA0136.1	0.00412
MA0137.2	MA0137.2	0.129
MA0138.2	MA0138.2	0.922
MA0139.1	MA0139.1	0.136
MA0140.1	MA0140.1	0.156
MA0141.1	MA0141.1	9.63969e-8
MA0142.1	MA0142.1	0.086
MA0143.1	MA0143.1	0.595
MA0144.1	MA0144.1	0.852
MA0145.1	MA0145.1	0.6
MA0146.1	MA0146.1	0.27
MA0147.1	MA0147.1	0.071
MA0148.1	MA0148.1	0.655
MA0149.1	MA0149.1	0.299
MA0150.1	MA0150.1	0.225
MA0152.1	MA0152.1	0.108
MA0153.1	MA0153.1	1.96848e-11
MA0154.1	MA0154.1	0.553
MA0155.1	MA0155.1	0.354
MA0156.1	MA0156.1	3.94118e-4
MA0157.1	MA0157.1	0.615
MA0159.1	MA0159.1	0.0086
MA0160.1	MA0160.1	0.00472
MA0162.1	MA0162.1	0.268
MA0163.1	MA0163.1	0.823
MA0164.1	MA0164.1	0.401
MA0258.1	MA0258.1	0.121
MA0259.1	MA0259.1	0.363

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11213

Novel motif	Logo	P-value
1	1	0.434
10	10	0.644
100	100	0.689
101	101	0.367
102	102	0.79
103	103	0.722
104	104	0.547
105	105	0.481
106	106	0.283
107	107	0.198
108	108	0.876
109	109	0.662
11	11	0.895
110	110	0.274
111	111	0.323
112	112	0.393
113	113	0.391
114	114	0.295
115	115	0.957
116	116	0.255
117	117	0.729
118	118	0.412
119	119	0.489
12	12	0.944
120	120	0.261
121	121	0.59
122	122	0.438
123	123	0.251
124	124	0.445
125	125	0.919
126	126	0.614
127	127	0.138
128	128	0.72
129	129	0.637
13	13	5.41498e-4
130	130	0.269
131	131	0.413
132	132	0.985
133	133	0.473
134	134	0.975
135	135	0.808
136	136	0.0563
137	137	0.3
138	138	0.133
139	139	0.572
14	14	0.89
140	140	0.548
141	141	0.424
142	142	0.857
143	143	0.43
144	144	0.131
145	145	0.129
146	146	0.665
147	147	0.749
148	148	0.992
149	149	0.404
15	15	0.677
150	150	0.188
151	151	0.36
152	152	0.248
153	153	0.922
154	154	0.582
155	155	0.126
156	156	5.13022e-36
157	157	0.755
158	158	0.105
159	159	0.0158
160	160	0.289
161	161	0.354
162	162	0.813
163	163	0.552
164	164	0.256
165	165	0.04
166	166	0.55
167	167	0.769
168	168	0.705
169	169	0.00493
17	17	0.59
18	18	0.039
19	19	0.228
2	2	0.665
20	20	0.198
21	21	0.399
22	22	0.309
23	23	0.0448
24	24	0.497
25	25	0.613
26	26	0.0831
27	27	0.271
28	28	0.341
29	29	0.369
3	3	0.895
30	30	0.0869
31	31	0.816
32	32	0.412
33	33	0.235
34	34	0.472
35	35	0.263
36	36	0.0893
37	37	0.0745
38	38	0.105
39	39	0.993
4	4	0.478
40	40	0.00554
41	41	0.993
42	42	0.549
43	43	0.581
44	44	0.996
45	45	0.256
46	46	0.917
47	47	0.748
48	48	0.923
49	49	0.371
5	5	0.13
50	50	0.626
51	51	0.892
52	52	0.6
53	53	0.421
54	54	0.976
55	55	0.232
56	56	0.972
57	57	0.426
58	58	0.91
59	59	0.153
6	6	0.0459
60	60	0.437
61	61	0.721
62	62	0.531
63	63	0.435
64	64	0.521
65	65	0.0461
66	66	0.367
67	67	0.951
68	68	0.67
69	69	0.23
7	7	0.223
70	70	0.168
71	71	0.302
72	72	0.107
73	73	0.112
74	74	0.944
75	75	0.294
76	76	0.461
77	77	0.915
78	78	0.0875
79	79	0.497
8	8	0.889
80	80	0.0309
81	81	0.447
82	82	0.705
83	83	0.989
84	84	0.442
85	85	0.157
86	86	0.768
87	87	2.81429e-6
88	88	0.376
89	89	0.105
9	9	0.38
90	90	0.906
91	91	0.242
92	92	0.463
93	93	0.292
94	94	0.865
95	95	0.187
96	96	0.485
97	97	0.217
98	98	0.714
99	99	0.342

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11213

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011393 mouse heart- neonate N00 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000304 (mouse neonate N0 sample)
0011393 (mouse heart- neonate N00 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005147
+|accession_numbers=CAGE;DRX008979;DRR009853;DRZ001278;DRZ002661;DRZ012628;DRZ014011
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr9:24578720..24578735,-!p1@Tbx20!2.32!207.96!Tbx20;;chr17:26978409..26978442,-!p1@Nkx2-5!2.05!109.99!Nkx2-5;;chr5:77543897..77543911,-!p2@Hopx!1.96!168.26!Hopx;;chr8:59799772..59799789,+!p1@Hand2!1.76!158.10!Hand2;;chr14:63864056..63864102,-!p1@Gata4!1.74!91.31!Gata4;;chr6:97879817..97879857,+!p2@Mitf!1.72!51.73!Mitf;;chr2:120365588..120365602,-!p2@Zfp106!1.43!42.62!Zfp106;;chr5:77544108..77544119,-!p7@Hopx!1.40!24.05!Hopx;;chr5:77544170..77544181,-!p6@Hopx!1.34!20.90!Hopx;;chr10:22539932..22539956,-!p1@Tcf21!1.25!44.25!Tcf21;;chr5:77543935..77543947,-!p4@Hopx!1.21!15.30!Hopx;;chr5:120285144..120285160,+!p1@Tbx5!1.19!14.60!Tbx5;;chr18:11052485..11052508,+!p2@Gata6!1.17!38.53!Gata6;;chr18:11052642..11052659,+!p1@Gata6!1.14!63.99!Gata6;;chr1:189821714..189821761,+!p1@Esrrg!1.14!23.70!Esrrg;;chr14:63890491..63890516,-!p2@Gata4!1.14!12.84!Gata4;;chr10:30562571..30562597,-!p1@Hey2!1.08!26.39!Hey2;;chr18:11052456..11052477,+!p3@Gata6!1.07!33.98!Gata6;;chr9:87626083..87626108,-!p1@Tbx18!1.06!23.24!Tbx18;;chr1:92895299..92895373,+!p2@Lrrfip1!1.04!206.91!Lrrfip1;;chr13:73397958..73397994,+!p1@Irx4!1.04!10.04!Irx4;;chr11:101755669..101755686,-!p1@Meox1!1.02!17.16!Meox1;;chr4:148178559..148178603,+!p1@Casz1!1.01!26.74!Casz1;;chr7:17647736..17647772,-!p1@Hif3a!0.98!31.18!Hif3a;;chr14:63890660..63890687,-!p7@Gata4!0.97!8.41!Gata4;;chr4:150482563..150482655,-!p2@Camta1!0.96!29.66!Camta1;;chr9:48644306..48644364,-!p1@Zbtb16!0.95!33.16!Zbtb16;;chr14:63890459..63890484,-!p4@Gata4!0.95!7.94!Gata4;;chr10:12810631..12810649,+!p1@Plagl1!0.93!203.76!Plagl1;;chr9:48644037..48644067,-!p2@Zbtb16!0.92!18.80!Zbtb16;;chr7:119885539..119885574,+!p3@Tead1!0.90!7.01!Tead1;;chr5:24107779..24107825,-!p1@Smarcd3!0.85!43.44!Smarcd3;;chr1:170362437..170362478,-!p5@Pbx1!0.84!19.27!Pbx1;;chr16:43363152..43363186,+!p3@Zbtb20!0.84!14.36!Zbtb20;;chr17:26978449..26978458,-!p3@Nkx2-5!0.84!5.96!Nkx2-5;;chr5:77524250..77524300,-!p1@Hopx!0.83!125.17!Hopx;;chr15:40486566..40486600,+!p1@Zfpm2!0.83!36.55!Zfpm2;;chr7:119822957..119822980,+!p2@Tead1!0.83!29.54!Tead1;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.83!23.94!Ppp1r13l;;chr4:133109285..133109308,+!p1@Nr0b2!0.83!5.84!Nr0b2;;chr17:26978521..26978536,-!p2@Nkx2-5!0.83!5.72!Nkx2-5;;chr5:138187775..138187845,+!p7@Tsc22d4!0.82!7.82!Tsc22d4;;chr8:94325321..94325366,-!p1@Irx3!0.80!13.54!Irx3;;chr1:191994550..191994623,-!p1@Prox1!0.79!38.65!Prox1;;chr5:120285161..120285176,+!p2@Tbx5!0.78!5.02!Tbx5;;chr14:63890519..63890539,-!p3@Gata4!0.77!4.90!Gata4;;chr1:189432907..189432926,+!p3@Esrrg!0.77!4.90!Esrrg;;chr12:37835141..37835194,+!p1@Meox2!0.76!15.88!Meox2;;chr11:70043257..70043263,-!p1@Bcl6b!0.76!8.64!Bcl6b;;chr11:52096066..52096081,-!p2@Tcf7!0.76!5.96!Tcf7;;chr18:11052606..11052633,+!p4@Gata6!0.75!12.73!Gata6;;chr10:30562617..30562637,-!p2@Hey2!0.75!5.96!Hey2;;chr5:120285130..120285141,+!p3@Tbx5!0.75!4.67!Tbx5;;chr14:63890691..63890718,-!p8@Gata4!0.74!4.55!Gata4;;chr4:135840573..135840601,+!p1@Zfp46!0.73!38.77!Zfp46;;chrX:137135036..137135064,-!p4@Tsc22d3!0.73!9.22!Tsc22d3;;chr6:97879802..97879816,+!p5@Mitf!0.72!4.20!Mitf;;chr4:148178529..148178548,+!p3@Casz1!0.71!10.51!Casz1;;chr7:119822915..119822936,+!p5@Tead1!0.71!7.24!Tead1;;chr2:151969288..151969294,+!p1@Tcf15!0.71!6.77!Tcf15;;chr6:53523358..53523388,+!p1@Creb5!0.69!53.83!Creb5;;chr14:64562503..64562524,+!p1@Sox7!0.69!26.04!Sox7;;chr6:90412582..90412601,+!p1@Klf15!0.69!20.78!Klf15;;chr2:168415815..168415872,-!p1@Nfatc2!0.68!23.70!Nfatc2;;chr4:82151148..82151159,-!p5@Nfib!0.68!12.03!Nfib;;chr11:96690779..96690790,-!p3@Nfe2l1!0.68!9.93!Nfe2l1;;chr3:94176733..94176794,+!p1@Rorc!0.67!32.58!Rorc;;chr7:17642053..17642066,-!p2@Hif3a!0.67!5.49!Hif3a;;chr7:123174606..123174636,-!p5@Sox6!0.67!4.90!Sox6;;chr3:128917187..128917223,+!p2@Pitx2!0.66!4.32!Pitx2;;chr16:43363190..43363242,+!p2@Zbtb20!0.65!11.91!Zbtb20;;chr13:72766279..72766296,+!p2@Irx2!0.65!5.49!Irx2;;chr17:46693053..46693064,-!p4@Srf!0.65!5.14!Srf;;chr17:46693078..46693097,-!p3@Srf!0.64!15.65!Srf;;chr8:94325273..94325288,-!p5@Irx3!0.64!4.32!Irx3;;chr14:63864337..63864381,-!p6@Gata4!0.64!3.39!Gata4;;chr14:63890545..63890560,-!p5@Gata4!0.64!3.39!Gata4;;chr13:73398004..73398017,+!p2@Irx4!0.64!3.39!Irx4;;chr1:193007123..193007139,-!p1@Atf3!0.63!21.37!Atf3;;chr2:104966766..104966786,+!p1@Wt1!0.63!5.49!Wt1;;chr13:72101141..72101158,-!p3@Irx1!0.63!4.20!Irx1;;chr7:17642018..17642045,-!p4@Hif3a!0.63!3.85!Hif3a;;chr1:189432881..189432903,+!p2@Esrrg!0.63!3.27!Esrrg;;chr7:74517658..74517731,-!p1@Mef2a!0.62!171.29!Mef2a;;chr9:96096707..96096772,+!p1@Tfdp2!0.62!57.57!Tfdp2;;chr18:80909801..80909819,-!p1@Nfatc1!0.62!22.19!Nfatc1;;chr6:90412608..90412630,+!p2@Klf15!0.62!7.36!Klf15;;chr7:74517982..74518012,-!p2@Mef2a!0.61!6.31!Mef2a;;chr9:106355684..106355744,+!p5@Pcbp4!0.61!5.02!Pcbp4;;chr7:119822892..119822901,+!p7@Tead1!0.61!4.32!Tead1;;chr1:191993385..191993405,-!p3@Prox1!0.61!3.04!Prox1;;chr11:90252223..90252240,-!p1@Hlf!0.60!29.66!Hlf;;chr10:67599319..67599360,-!p2@Arid5b!0.59!39.00!Arid5b;;chr7:6649134..6649167,-!p1@Zim1!0.59!18.80!Zim1;;chr13:72766250..72766273,+!p1@Irx2!0.59!4.90!Irx2;;chr13:72101178..72101203,-!p1@Irx1!0.59!4.90!Irx1;;chr5:20387850..20387869,-!p1@Phtf2!0.58!35.15!Phtf2;;chr4:120488308..120488366,-!p1@Nfyc!0.57!19.27!Nfyc;;chr9:96653072..96653154,-!p1@Zbtb38!0.57!8.52!Zbtb38;;chr14:19071466..19071550,-!p1@Nr1d2!0.56!21.95!Nr1d2;;chr9:63869729..63869749,-!p4@Smad6!0.56!5.84!Smad6;;chr4:13712228..13712267,+!p3@Runx1t1!0.56!5.02!Runx1t1;;chr15:85566184..85566238,+!p1@Ppara!0.56!4.32!Ppara;;chr7:123174485..123174514,-!p6@Sox6!0.56!3.39!Sox6;;chr9:48644013..48644027,-!p5@Zbtb16!0.56!3.39!Zbtb16;;chr11:96690797..96690813,-!p1@Nfe2l1!0.55!62.24!Nfe2l1;;chr12:25336211..25336274,+!p1@Klf11!0.55!33.39!Klf11;;chr1:4483679..4483695,-!p1@Sox17!0.55!14.83!Sox17;;chr17:14011485..14011507,+!p2@Mllt4!0.55!2.57!Mllt4;;chr5:77524304..77524315,-!p5@Hopx!0.54!5.96!Hopx;;chr5:120285104..120285113,+!p5@Tbx5!0.54!2.45!Tbx5;;chr13:73397921..73397935,+!p3@Irx4!0.54!2.45!Irx4;;chr12:87702380..87702394,+!p6@Esrrb!0.54!2.45!Esrrb;;chr17:26978464..26978469,-!p4@Nkx2-5!0.54!2.45!Nkx2-5;;chr9:111020574..111020687,+!p1@Lrrfip2!0.53!136.27!Lrrfip2;;chr10:92773591..92773623,-!p1@Elk3!0.53!68.07!Elk3;;chrX:137077653..137077669,-!p3@Tsc22d3!0.53!13.31!Tsc22d3;;chr5:77524231..77524245,-!p3@Hopx!0.53!7.01!Hopx;;chr8:94881733..94881790,+!p1@Irx5!0.53!5.37!Irx5;;chr4:13712168..13712218,+!p4@Runx1t1!0.53!4.44!Runx1t1;;chr16:95680889..95680991,-!p1@Erg!0.52!23.94!Erg;;chr4:3865501..3865548,-!p1@Plag1!0.52!14.95!Plag1;;chr8:94325814..94325839,-!p2@Irx3!0.52!5.60!Irx3;;chr13:31898637..31898653,+!p2@Foxc1!0.52!4.67!Foxc1;;chr7:119822940..119822945,+!p6@Tead1!0.52!3.15!Tead1;;chr18:11052516..11052525,+!p5@Gata6!0.52!2.34!Gata6;;chr4:151235776..151235788,-!p5@Camta1!0.51!4.44!Camta1;;chr15:40486615..40486628,+!p3@Zfpm2!0.51!3.97!Zfpm2;;chr2:104966874..104966907,+!p2@Wt1!0.51!2.22!Wt1;;chr17:46693107..46693137,-!p1@Srf!0.50!27.32!Srf;;chr2:152223881..152223933,-!p3@Sox12!0.50!8.99!Sox12;;chr4:154010918..154010931,-!p1@Prdm16!0.50!7.82!Prdm16;;chr1:52176378..52176401,+!p3@Stat1!0.49!7.82!Stat1;;chr14:17407970..17408015,-!p2@Rarb!0.49!7.01!Rarb;;chr9:48644429..48644462,-!p3@Zbtb16!0.49!4.79!Zbtb16;;chr9:48644284..48644305,-!p4@Zbtb16!0.49!3.04!Zbtb16;;chr8:94325779..94325791,-!p7@Irx3!0.49!2.10!Irx3;;chr4:150482353..150482386,-!p6@Camta1!0.49!2.10!Camta1;;chr17:14011529..14011544,+!p7@Mllt4!0.49!2.10!Mllt4;;chr12:39506873..39506913,+!p1@Etv1!0.48!28.02!Etv1;;chr17:23004042..23004077,-!p2@Zfp945!0.48!10.04!Zfp945;;chr8:92872242..92872285,-!p1@Tox3!0.48!6.42!Tox3;;chr8:94325847..94325869,-!p3@Irx3!0.48!3.74!Irx3;;chr13:31898496..31898519,+!p3@Foxc1!0.48!3.74!Foxc1;;chr9:32349174..32349187,-!p6@Fli1!0.48!2.45!Fli1;;chr8:94881872..94881887,+!p2@Irx5!0.48!2.22!Irx5;;chr4:148275237..148275311,+!p2@Casz1!0.47!10.51!Casz1;;chr4:108131994..108132056,+!p2@Zcchc11!0.47!8.17!Zcchc11;;chr4:154010940..154010962,-!p3@Prdm16!0.47!5.25!Prdm16;;chr12:37835203..37835218,+!p3@Meox2!0.47!2.45!Meox2;;chr2:105003277..105003280,+!p5@Wt1!0.47!1.99!Wt1;;chr9:87626109..87626120,-!p3@Tbx18!0.47!1.99!Tbx18;;chr17:47873985..47874056,+!p1@Tfeb!0.46!21.13!Tfeb;;chr6:145814003..145814056,-!p1@Bhlhe41!0.46!6.89!Bhlhe41;;chr4:97444261..97444272,+!p9@Nfia!0.46!5.49!Nfia;;chr2:35960919..35960954,-!p1@Lhx6!0.46!4.20!Lhx6;;chr17:51971960..51971979,-!p1@Satb1!0.46!2.80!Satb1;;chr12:87702062..87702081,+!p4@Esrrb!0.46!1.87!Esrrb;;chr13:83663902..83663927,+!p1@Mef2c!0.45!61.54!Mef2c;;chr6:88148650..88148669,+!p1@Gata2!0.45!20.67!Gata2;;chr9:32443818..32443854,+!p2@Ets1!0.45!10.74!Ets1;;chr14:52634536..52634572,-!p4@Zfp219!0.45!7.01!Zfp219;;chr18:55152179..55152194,-!p5@Zfp608!0.45!6.66!Zfp608;;chr11:100800641..100800669,-!p3@Stat3!0.45!3.74!Stat3;;chr2:181406327..181406350,-!p1@Sox18!0.44!77.53!Sox18;;chr4:97444471..97444514,+!p1@Nfia!0.44!66.09!Nfia;;chr4:97444012..97444045,+!p4@Nfia!0.44!18.33!Nfia;;chrX:137077716..137077734,-!p1@Tsc22d3!0.44!17.63!Tsc22d3;;chrX:137077151..137077227,-!p2@Tsc22d3!0.44!17.05!Tsc22d3;;chrX:132420442..132420482,+!p2@Bhlhb9!0.44!12.38!Bhlhb9;;chr1:52176406..52176433,+!p2@Stat1!0.44!5.49!Stat1;;chr2:44965788..44965815,-!p11@Zeb2!0.44!3.97!Zeb2;;chr11:69749320..69749345,+!p2@Ybx2!0.44!3.39!Ybx2;;chr15:85565338..85565355,+!p7@Ppara!0.44!1.75!Ppara;;chr4:82151178..82151262,-!p1@Nfib!0.43!97.50!Nfib;;chr19:6996243..6996293,-!p1@Esrra!0.43!26.39!Esrra;;chr11:44431687..44431706,+!p2@Ebf1!0.43!10.86!Ebf1;;chr9:63869751..63869767,-!p1@Smad6!0.43!5.72!Smad6;;chr17:87153440..87153451,+!p4@Epas1!0.43!4.32!Epas1;;chr18:5591866..5591900,+!p1@Zeb1!0.42!58.50!Zeb1;;chr17:23004085..23004108,-!p1@Zfp945!0.42!22.77!Zfp945;;chr2:152223441..152223465,-!p2@Sox12!0.42!9.22!Sox12;;chr7:134489096..134489123,-!p2@Zfp768!0.42!6.77!Zfp768;;chr13:64253718..64253763,-!p2@Zfp367!0.42!5.49!Zfp367;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.42!3.74!Zbtb38;;chr2:17976799..17976829,+!p5@Mllt10!0.42!2.22!Mllt10;;chr10:88996295..88996335,-!p3@Nr1h4!0.4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Zfp644!0.24!2.69!Zfp644;;chr6:128250471..128250519,-!p1@Tead4!0.24!2.34!Tead4;;chr18:69753108..69753139,+!p8@Tcf4!0.24!2.34!Tcf4;;chr19:55816278..55816287,+!p10@Tcf7l2!0.24!2.34!Tcf7l2;;chr13:5860872..5860883,+!p3@Klf6!0.24!2.34!Klf6;;chr6:72185553..72185612,-!p2@Atoh8!0.24!2.22!Atoh8;;chr2:34227524..34227547,-!p2@Pbx3!0.24!2.22!Pbx3;;chr2:120365219..120365232,-!p4@Zfp106!0.24!1.40!Zfp106;;chr9:32348906..32348920,-!p3@Fli1!0.24!1.40!Fli1;;chr16:43364215..43364252,+!p14@Zbtb20!0.24!1.17!Zbtb20;;chr11:23978353..23978379,+!p10@Bcl11a!0.24!1.05!Bcl11a;;chr4:154010334..154010347,-!p8@Prdm16!0.24!1.05!Prdm16;;chr12:75008961..75009002,+!p1@Hif1a!0.23!91.54!Hif1a;;chr9:32503590..32503680,+!p1@Ets1!0.23!55.35!Ets1;;chr15:76181733..76181767,+!p1@Maf1!0.23!44.02!Maf1;;chr13:96095150..96095184,+!p2@Zbed3!0.23!10.16!Zbed3;;chr8:79426176..79426275,+!p1@Nr3c2!0.23!7.01!Nr3c2;;chr5:22940320..22940331,+!p2@Mll5!0.23!3.85!Mll5;;chr10:41996471..41996487,-!p4@Foxo3!0.23!3.74!Foxo3;;chr7:4990015..4990028,-!p2@Zfp784!0.23!3.50!Zfp784;;chr12:34642682..34642753,+!p2@Twist1!0.23!3.27!Twist1;;chr12:3807001..3807016,+!p5@Dnmt3a!0.23!3.04!Dnmt3a;;chr4:97439519..97439539,+!p11@Nfia!0.23!2.45!Nfia;;chr5:122500142..122500167,-!p2@Cux2!0.23!2.45!Cux2;;chr4:97444563..97444572,+!p12@Nfia!0.23!2.34!Nfia;;chr8:87225702..87225726,+!p3@Lyl1!0.23!2.34!Lyl1;;chr17:47874074..47874098,+!p3@Tfeb!0.23!2.10!Tfeb;;chr15:100058358..100058374,+!p2@Gm1862,p4@Atf1!0.23!1.99!Atf1;;chr7:4946900..4946921,-!p5@Zfp579!0.23!1.75!Zfp579;;chr6:146744595..146744613,+!p2@Arntl2!0.23!1.75!Arntl2;;chr19:5424878..5424890,-!p7@Drap1!0.23!1.63!Drap1;;chr11:44431710..44431725,+!p7@Ebf1!0.23!1.63!Ebf1;;chr15:61818914..61818943,+!p7@Myc!0.23!1.05!Myc;;chr15:57526415..57526425,+!p7@Zhx2!0.23!1.05!Zhx2;;chr3:130815703..130815721,+!p2@Lef1!0.23!1.05!Lef1;;chr4:150513630..150513686,-!p4@Camta1!0.23!0.93!Camta1;;chr3:29912058..29912071,-!p6@Mecom!0.23!0.93!Mecom;;chr3:66785857..66785873,-!p1@Shox2!0.23!0.70!Shox2;;chr11:90250999..90251013,-!p8@Hlf!0.23!0.70!Hlf;;chr11:70043718..70043743,-!p3@Bcl6b!0.23!0.70!Bcl6b;;chr10:30375665..30375674,-!p11@Ncoa7!0.23!0.70!Ncoa7;;chr1:87546572..87546579,+!p4@Sp100!0.23!0.70!Sp100;;chr6:52133827..52133854,-!p2@Hoxa3!0.23!0.70!Hoxa3;;chr13:83712735..83712761,+!p9@Mef2c!0.23!0.70!Mef2c;;chr12:87702439..87702449,+!p14@Esrrb!0.23!0.70!Esrrb;;chr7:38554745..38554756,-!p7@Zfp536!0.23!0.70!Zfp536;;chr9:106355745..106355766,+!p7@Pcbp4!0.23!0.70!Pcbp4;;chr8:94881686..94881700,+!p4@Irx5!0.23!0.70!Irx5;;chr18:5591424..5591444,+!p5@Zeb1!0.23!0.70!Zeb1;;chr19:45225149..45225186,+!p1@Tlx1!0.23!0.70!Tlx1;;chr12:81213989..81214006,-!p1@Zfp36l1!0.22!76.36!Zfp36l1;;chr11:100800671..100800770,-!p1@Stat3!0.22!48.34!Stat3;;chr9:56266612..56266654,+!p1@Hmg20a!0.22!41.57!Hmg20a;;chr11:18918959..18918976,-!p2@Meis1!0.22!19.97!Meis1;;chr9:22112085..22112138,-!p1@Zfp810!0.22!18.33!Zfp810;;chr10:57206160..57206220,+!p1@Hsf2!0.22!15.53!Hsf2;;chr7:25292331..25292421,+!p1@Zfp428!0.22!10.16!Zfp428;;chr16:17233653..17233683,+!p1@Hic2!0.22!8.87!Hic2;;chr8:97856080..97856150,-!p2@Zfp319!0.22!8.06!Zfp319;;chr6:72849946..72849979,-!p2@Kcmf1!0.22!8.06!Kcmf1;;chr9:96620228..96620308,-!p3@Zbtb38!0.22!6.42!Zbtb38;;chr18:69505414..69505465,+!p6@Tcf4!0.22!4.79!Tcf4;;chr4:120624269..120624302,-!p1@Zfp69!0.22!4.67!Zfp69;;chr14:65977459..65977489,+!p3@Zfp395!0.22!4.55!Zfp395;;chr4:97444280..97444291,+!p10@Nfia!0.22!2.80!Nfia;;chr15:98126545..98126588,-!p1@Zfp641!0.22!2.45!Zfp641;;chr19:46380235..46380277,+!p3@Nfkb2!0.22!2.45!Nfkb2;;chr2:92886587..92886622,-!p3@Prdm11!0.22!1.40!Prdm11;;chr1:4486481..4486501,-!p2@Sox17!0.22!1.40!Sox17;;chr2:152223852..152223872,-!p7@Sox12!0.22!1.17!Sox12;;chrX:103070960..103070973,-!p7@Atrx!0.22!1.17!Atrx;;chr15:102301149..102301221,+!p2@Pcbp2!0.21!53.48!Pcbp2;;chr7:26035739..26035757,-!p1@Erf!0.21!35.96!Erf;;chr13:44826722..44826742,+!p1@Jarid2!0.21!23.12!Jarid2;;chr5:134790384..134790418,-!p2@Gtf2i!0.21!18.68!Gtf2i;;chr16:42907676..42907797,+!p1@Zbtb20!0.21!18.33!Zbtb20;;chr11:59319701..59319741,-!p1@Zkscan17!0.21!16.35!Zkscan17;;chr18:3281034..3281104,-!p1@Crem!0.21!9.69!Crem;;chr18:69504157..69504184,+!p3@Tcf4!0.21!8.52!Tcf4;;chr2:181194069..181194144,-!p1@Zbtb46!0.21!7.71!Zbtb46;;chr6:37392159..37392172,-!p2@Creb3l2!0.21!6.07!Creb3l2;;chr4:126698529..126698536,+!p2@Sfpq!0.21!6.07!Sfpq;;chr7:6336020..6336068,+!p1@Zfp28!0.21!5.72!Zfp28;;chr2:44965856..44965896,-!p5@Zeb2!0.21!4.90!Zeb2;;chr7:135020324..135020368,-!p4@Zfp668!0.21!3.50!Zfp668;;chr1:162836606..162836631,+!p2@Rc3h1!0.21!3.27!Rc3h1;;chr4:13670571..13670625,+!p1@Runx1t1!0.21!3.27!Runx1t1;;chr7:25292076..25292114,+!p4@Zfp428!0.21!3.27!Zfp428;;chr6:133985971..133985991,+!p6@Etv6!0.21!3.15!Etv6;;chr4:128483731..128483757,-!p4@Zfp362!0.21!2.57!Zfp362;;chr18:24113349..24113374,+!p2@Zfp397!0.21!2.34!Zfp397;;chr9:96619968..96619983,-!p6@Zbtb38!0.21!1.63!Zbtb38;;chr16:4594853..4594884,+!p3@Glis2!0.21!1.52!Glis2;;chr7:13421299..13421303,+!p3@Zfp110!0.21!1.17!Zfp110;;chr7:16760434..16760453,+!p2@LOC100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!0.13!1.87!Pbx1;;chr8:4613211..4613224,+!p3@Zfp958!0.13!1.75!Zfp958;;chr5:65213356..65213412,+!p6@Klf3!0.13!1.75!Klf3;;chrX:91368504..91368516,-!p3@Zfx!0.13!1.63!Zfx;;chr14:56443806..56443848,+!p1@Nfatc4!0.13!1.63!Nfatc4;;chr9:122812356..122812381,+!p@chr9:122812356..122812381,+!0.13!1.52!Gm8008;;chr18:3337465..3337498,-!p6@Crem!0.13!1.52!Crem;;chr9:72122708..72122720,+!p3@Zfp280d!0.13!1.40!Zfp280d;;chr5:138187583..138187602,+!p6@Tsc22d4!0.13!1.40!Tsc22d4;;chr6:115310872..115310899,+!p2@Pparg!0.13!1.28!Pparg;;chr9:72380594..72380635,+!p3@Rfx7!0.13!1.28!Rfx7;;chr13:96095097..96095114,+!p5@Zbed3!0.13!1.28!Zbed3;;chr19:55817590..55817625,+!p11@Tcf7l2!0.13!1.05!Tcf7l2;;chr18:24113207..24113218,+!p3@Zfp397!0.13!1.05!Zfp397;;chr10:79896129..79896163,-!p6@Tcf3!0.13!1.05!Tcf3;;chr13:29045131..29045159,-!p3@Sox4!0.13!0.93!Sox4;;chr8:111228161..111228183,+!p@chr8:111228161..111228183,+!0.13!0.93!Zfhx3;;chr12:9581243..9581254,+!p4@Osr1!0.13!0.82!Osr1;;chr17:87153505..87153516,+!p6@Epas1!0.13!0.82!Epas1;;chr18:55149778..55149798,-!p11@Zfp608!0.13!0.82!Zfp608;;chr5:104182928..104182942,+!p10@Aff1!0.13!0.82!Aff1;;chr3:133207369..133207376,-!p3@Tet2!0.13!0.70!Tet2;;chr7:38557752..38557793,-!p3@Zfp536!0.13!0.58!Zfp536;;chr2:56976467..56976482,-!p4@Nr4a2!0.13!0.58!Nr4a2;;chr1:92950099..92950109,+!p3@Lrrfip1!0.13!0.58!Lrrfip1;;chr18:5593564..5593584,+!p2@Zeb1!0.13!0.58!Zeb1;;chr7:24867205..24867217,+!p2@Zfp180!0.13!0.47!Zfp180;;chr9:119893782..119893802,-!p1@Csrnp1!0.13!0.35!Csrnp1;;chr8:86590801..86590818,+!p2@Rfx1!0.13!0.35!Rfx1;;chr16:43364012..43364030,+!p22@Zbtb20!0.13!0.35!Zbtb20;;chr19:28085572..28085579,-!p9@Rfx3!0.13!0.35!Rfx3;;chr5:104182999..104183006,+!p18@Aff1!0.13!0.35!Aff1;;chr3:94181355..94181373,+!p5@Rorc!0.13!0.35!Rorc;;chr4:82351639..82351658,-!p14@Nfib!0.13!0.35!Nfib;;chr4:97444086..97444093,+!p24@Nfia!0.13!0.35!Nfia;;chr3:66785181..66785199,-!p2@Shox2!0.13!0.35!Shox2;;chr2:74536050..74536065,+!p2@Hoxd9!0.13!0.35!Hoxd9;;chr10:67599527..67599530,-!p9@Arid5b!0.13!0.35!Arid5b;;chr11:98631631..98631667,-!p12@Nr1d1!0.13!0.35!Nr1d1;;chr11:69749396..69749433,+!p1@Ybx2!0.13!0.35!Ybx2;;chr11:98407234..98407259,-!p2@Ikzf3!0.13!0.35!Ikzf3;;chr10:126778639..126778670,-!p3@Gli1!0.13!0.35!Gli1;;chr11:69749437..69749467,+!p3@Ybx2!0.13!0.35!Ybx2;;chr11:62272200..62272221,-!p11@Ncor1!0.13!0.35!Ncor1;;chr10:30375647..30375658,-!p7@Ncoa7!0.13!0.35!Ncoa7;;chr10:75384163..75384185,-!p3@Smarcb1!0.13!0.35!Smarcb1;;chr11:90252071..90252093,-!p7@Hlf!0.13!0.35!Hlf;;chr6:88148324..88148328,+!p3@Gata2!0.13!0.35!Gata2;;chr7:123177325..123177336,-!p13@Sox6!0.13!0.35!Sox6;;chr6:99216360..99216372,-!p8@Foxp1!0.13!0.35!Foxp1;;chr6:115311132..115311147,+!p9@Pparg!0.13!0.35!Pparg;;chr1:4486594..4486612,-!p6@Sox17!0.13!0.35!Sox17;;chr2:115890864..115890869,-!p14@Meis2!0.13!0.35!Meis2;;chr2:147190749..147190769,+!p1@Pax1!0.13!0.35!Pax1;;chr1:135557400..135557421,-!p4@Zbed6!0.13!0.35!Zbed6;;chr14:67853682..67853702,+!p4@Ebf2!0.13!0.35!Ebf2;;chr12:77278048..77278058,-!p2@Esr2!0.13!0.35!Esr2;;chr13:83663500..83663519,+!p8@Mef2c!0.13!0.35!Mef2c;;chr12:39510260..39510271,+!p10@Etv1!0.13!0.35!Etv1;;chr13:42147117..42147142,+!p3@Hivep1!0.13!0.35!Hivep1;;chr12:81214217..81214219,-!p2@Zfp36l1!0.13!0.35!Zfp36l1;;chr12:39510042..39510069,+!p8@Etv1!0.13!0.35!Etv1;;chrX:48499591..48499593,-!p3@Mbnl3!0.13!0.35!Mbnl3;;chr18:60720384..60720450,+!p1@Rbm22!0.12!60.83!Rbm22;;chr11:99091744..99091778,-!p1@Smarce1!0.12!50.21!Smarce1;;chr12:100801772..100801861,-!p1@Foxn3!0.12!24.05!Foxn3;;chr6:120314112..120314181,+!p1@Kdm5a!0.12!22.42!Kdm5a;;chr7:134170081..134170122,-!p2@Maz!0.12!21.25!Maz;;chr6:116578973..116579022,-!p1@Zfp422!0.12!19.62!Zfp422;;
@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011393
 |is_obsolete=
+|library_id=CNhs11213
+|library_id_phase_based=2:CNhs11213
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;639
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;639
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N00.CNhs11213.639-21E3.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N00.CNhs11213.639-21E3.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N00.CNhs11213.639-21E3.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N00.CNhs11213.639-21E3.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N00.CNhs11213.639-21E3.mm9.nobarcode.rdna.fa.gz
 |name=heart, neonate N00
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11213,LSID748,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.025446419079083,0,0,0,0,0.0368888724804875,1.35257888294139,0,0.0239809638088447,0,0,0.59111747196738,0,0,0,0,0,0,0.209153656275042,0,0,0,0,0,0.0911499572672242,0,0,0,0,0,0,0,0.298219299677985,0,0,0,0,0.0204985291480816,0.0564152730131305,0.00859549279600791,0.187336599282485,0.102485547607338,0.187747679530811,0.0479619276176895,0,0,0,0,0,0,0,0,0,0.199707663231786,0,0.514048623563146,0.0479619276176895,0,0,0,0.0247435808446181,0,0.0612793213735714,0.311941961198173,0.358775719148858,0.0373216443470594,0.0577515105150321,0.128915724401428,0.262642567111753,0.159035307724707,0,0,0.013714234836224,0,0.0911499572672242,0,0.0328795583044409,-0.147854824010958,-0.283972919542397,-0.0308696672222179,0,0,0,0,0.0455749786336121,0,-0.0915665403705771,0.00690307053371164,0.0541629013832007,0,0,0,0,0.0754767656089536
 |rna_box=21
 |rna_catalog_number=
@@ Line 58: / Line 73: @@
 |rna_rin=
 |rna_sample_type=
-|rna_tube_id=21E3
+|rna_tube_id=2.10E+04
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 81: / Line 97: @@
 |top_motifs=NR5A1,2:3.60608604297;MEF2{A,B,C,D}:3.13858975598;HOX{A5,B5}:2.35666708242;EVI1:2.29504786698;SRF:2.21560347446;GATA4:2.15904996289;NR3C1:2.10529853988;RXR{A,B,G}:1.94873896036;TEAD1:1.79716174413;AR:1.73742985287;NKX2-1,4:1.6736076253;FOXL1:1.56055123464;IKZF2:1.52179003134;ESRRA:1.47934884899;T:1.46315000992;ALX1:1.3996416861;TGIF1:1.38114984976;SOX5:1.37364573954;HMGA1,2:1.30740421007;IRF7:1.29112151657;NFE2L1:1.27171309818;HIF1A:1.27009855033;NKX2-2,8:1.24273820396;POU3F1..4:1.23224765778;PAX4:1.22540165993;NFATC1..3:1.17901269255;MYBL2:1.14350444112;PAX2:1.08688915339;UFEwm:1.03305171934;FOXO1,3,4:0.994856166918;MAFB:0.976571453453;NR6A1:0.887365047115;HBP1_HMGB_SSRP1_UBTF:0.854802998906;BPTF:0.823049445105;TEF:0.73143844435;GATA6:0.721821133258;PRDM1:0.719425009693;EBF1:0.68059437777;PITX1..3:0.676345175337;GCM1,2:0.64078594985;IKZF1:0.630457145488;FOXP1:0.593266339251;KLF4:0.575838456794;SOX{8,9,10}:0.52799270551;TFAP4:0.522046447149;NANOG{mouse}:0.516049470856;FOX{D1,D2}:0.486528121306;GFI1B:0.428645972696;MZF1:0.403231132565;ESR1:0.347777681321;TLX1..3_NFIC{dimer}:0.343364881773;YY1:0.305068163307;TFCP2:0.288788873313;CDC5L:0.287170681235;TOPORS:0.276495379397;SREBF1,2:0.262443232403;EP300:0.255279527774;CUX2:0.253545244124;MAZ:0.250719667273;HAND1,2:0.246284164104;ZBTB16:0.209153587453;FOXD3:0.194884964812;BREu{core}:0.181391135763;ATF4:0.170623730445;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.169183277296;TFAP2B:0.161190447579;FOSL2:0.155491679044;PATZ1:0.144810759782;CREB1:0.140135949392;RREB1:0.139629409436;SPIB:0.138909803463;SP1:0.130379951531;NFE2L2:0.12914395917;EN1,2:0.115838007145;MTE{core}:0.106486892731;SOX17:0.0996767765773;TLX2:0.0709361961059;ZNF238:0.0677435874064;SOX2:0.043840237233;GFI1:0.0424620969366;HIC1:0.0396297825217;ZFP161:0.038540200536;XCPE1{core}:0.0269884007741;ATF2:0.0269111100454;RBPJ:0.00861256401812;ELF1,2,4:0.00353801665902;RORA:-0.0408375118544;NR1H4:-0.0597392025342;GLI1..3:-0.0637212074613;TFAP2{A,C}:-0.073241749053;ZNF384:-0.0745730472507;HES1:-0.0915843708361;FOX{I1,J2}:-0.0939597721954;NHLH1,2:-0.102301483643;IRF1,2:-0.10706456505;SMAD1..7,9:-0.115067029499;ETS1,2:-0.130172667523;NKX3-2:-0.134706828815;PAX5:-0.13766974373;NKX3-1:-0.138598229584;PDX1:-0.144263574205;EGR1..3:-0.161536908775;FOXN1:-0.162937468476;GTF2I:-0.164289523989;CDX1,2,4:-0.165871002154;E2F1..5:-0.175891814693;GTF2A1,2:-0.194227728422;HOXA9_MEIS1:-0.202957353058;NFIX:-0.22290887501;ZNF143:-0.226906905796;NRF1:-0.242376224832;TBP:-0.250554859375;MYB:-0.256076559771;RXRA_VDR{dimer}:-0.267202077612;ARID5B:-0.267917612433;SPI1:-0.270255043003;NKX6-1,2:-0.310611003794;FOXP3:-0.316522942921;CRX:-0.321911043003;ZIC1..3:-0.325746539104;RFX2..5_RFXANK_RFXAP:-0.329565989702;PAX8:-0.329840747093;ELK1,4_GABP{A,B1}:-0.349584757992;NANOG:-0.371192970022;DBP:-0.37124759097;ALX4:-0.377793318343;TFDP1:-0.390197995621;MED-1{core}:-0.415007688262;FOXA2:-0.416949703157;MTF1:-0.434655012909;TBX4,5:-0.455932358356;JUN:-0.456578169307;VSX1,2:-0.479479858497;ZNF148:-0.485779976624;BACH2:-0.518827683116;DMAP1_NCOR{1,2}_SMARC:-0.521865309009;AHR_ARNT_ARNT2:-0.527285063725;ATF6:-0.537215466924;AIRE:-0.544299448607;ZNF423:-0.549084098744;NFE2:-0.557211415444;ATF5_CREB3:-0.579651381349;TP53:-0.587308050374;NFIL3:-0.595993910737;RFX1:-0.652088340756;NFY{A,B,C}:-0.664178732874;HNF4A_NR2F1,2:-0.677878531587;NKX2-3_NKX2-5:-0.684197742759;REST:-0.692462872276;MYFfamily:-0.711563960046;NFKB1_REL_RELA:-0.730762344681;PAX1,9:-0.760859650591;RUNX1..3:-0.761666355996;ZBTB6:-0.774371128007;HNF1A:-0.783882282969;POU6F1:-0.810164138538;FOS_FOS{B,L1}_JUN{B,D}:-0.827573154288;POU1F1:-0.83058647917;STAT2,4,6:-0.845187257844;TAL1_TCF{3,4,12}:-0.896227858442;SNAI1..3:-0.897023339372;FOX{F1,F2,J1}:-0.938003851397;HLF:-0.949727517277;CEBPA,B_DDIT3:-1.03331864696;STAT1,3:-1.08522505585;HOX{A4,D4}:-1.09627202046;POU2F1..3:-1.112198682;ZEB1:-1.11921356874;LMO2:-1.14520700087;MYOD1:-1.15416978774;POU5F1:-1.18537959372;PPARG:-1.1854570601;PBX1:-1.20161883569;HSF1,2:-1.20188364382;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.22517782067;bHLH_family:-1.22786645788;OCT4_SOX2{dimer}:-1.27428358289;ONECUT1,2:-1.29186570773;FOXQ1:-1.29947392601;LHX3,4:-1.30985068033;STAT5{A,B}:-1.34618520349;GZF1:-1.3721987868;PAX6:-1.38235549341;ADNP_IRX_SIX_ZHX:-1.41241863964;PRRX1,2:-1.46766689895;HMX1:-1.61990044177;LEF1_TCF7_TCF7L1,2:-1.69781570036;SPZ1:-1.79011035186;FOXM1:-2.65702888453
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:639-21E3;search_select_hide=table117:639-21E3
 }}

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FF:639-21E3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:18, 4 June 2020

CNhs11213

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0