FF:976-16D8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005725 | |DRA_sample_Accession=CAGE@SAMD00005725 | ||
|accession_numbers=CAGE;DRX008992;DRR009866;DRZ001291;DRZ002674 | |accession_numbers=CAGE;DRX008992;DRR009866;DRZ001291;DRZ002674;DRZ012641;DRZ014024 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0005409 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0005409 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr5:148118639..148118715,-!p1@Cdx2!1.80!61.60!Cdx2;;chr3:3634145..3634161,+!p1@Hnf4g!1.70!48.84!Hnf4g;;chr8:59799772..59799789,+!p1@Hand2!1.61!111.60!Hand2;;chr10:22539932..22539956,-!p1@Tcf21!1.61!103.35!Tcf21;;chr2:163332558..163332596,+!p2@Hnf4a!1.60!39.18!Hnf4a;;chr8:77396591..77396639,+!p1@Isx!1.60!38.92!Isx;;chr1:137155026..137155042,-!p1@Elf3!1.57!201.29!Elf3;;chr8:123608252..123608268,+!p1@Foxf1a!1.52!46.78!Foxf1a;;chr3:3508024..3508069,+!p2@Hnf4g!1.46!27.58!Hnf4g;;chr10:88969376..88969395,-!p1@Nr1h4!1.45!27.19!Nr1h4;;chr19:43686789..43686811,+!p1@Nkx2-3!1.41!24.48!Nkx2-3;;chr11:57645506..57645523,-!p1@Hand1!1.35!21.13!Hand1;;chr5:148118840..148118857,-!p2@Cdx2!1.34!21.01!Cdx2;;chr10:86956396..86956411,-!p1@Ascl1!1.32!30.54!Ascl1;;chr13:31717548..31717596,+!p1@Foxf2!1.29!36.34!Foxf2;;chr7:108966820..108966835,+!p1@Phox2a!1.28!17.91!Phox2a;;chr7:17647736..17647772,-!p1@Hif3a!1.24!56.83!Hif3a;;chr10:119913310..119913366,-!p1@Hmga2!1.23!121.78!Hmga2;;chr6:83020355..83020371,-!p1@Tlx2!1.23!16.11!Tlx2;;chr5:67490284..67490302,-!p1@Phox2b!1.23!16.11!Phox2b;;chr10:61595830..61595846,+!p1@Neurog3!1.22!15.59!Neurog3;;chr10:119913546..119913583,-!p3@Hmga2!1.20!31.06!Hmga2;;chr2:164228702..164228719,+!p1@Rbpjl!1.19!14.43!Rbpjl;;chr18:64499706..64499721,+!p2@Onecut2!1.18!19.97!Onecut2;;chr2:163372884..163372904,+!p1@Hnf4a!1.18!14.05!Hnf4a;;chr11:96164821..96164865,+!p1@Hoxb5!1.16!13.53!Hoxb5;;chr14:63864056..63864102,-!p1@Gata4!1.15!22.68!Gata4;;chr13:55932591..55932622,-!p1@Pitx1!1.13!15.21!Pitx1;;chr16:38294860..38294924,-!p1@Nr1i2!1.13!12.50!Nr1i2;;chr10:12810631..12810649,+!p1@Plagl1!1.11!307.22!Plagl1;;chr18:64499674..64499696,+!p1@Onecut2!1.10!20.10!Onecut2;;chr5:148118792..148118806,-!p3@Cdx2!1.10!11.73!Cdx2;;chr6:52154414..52154462,-!p1@Hoxa5!1.09!15.59!Hoxa5;;chr10:119914001..119914078,-!p4@Hmga2!1.06!14.43!Hmga2;;chr2:74583776..74583815,+!p3@Hoxd3!1.06!10.57!Hoxd3;;chr17:27865882..27865901,-!p1@Spdef!1.05!10.18!Spdef;;chr15:102828658..102828678,+!p1@Hoxc6!1.03!9.79!Hoxc6;;chr2:180069370..180069409,-!p1@Gata5!1.02!11.08!Gata5;;chr14:99697871..99697934,+!p1@Klf5!1.01!186.99!Klf5;;chr18:61195865..61195880,-!p1@Cdx1!0.97!8.38!Cdx1;;chr8:77397095..77397127,+!p2@Isx!0.97!8.38!Isx;;chr6:52190467..52190500,-!p1@Hoxa10!0.95!7.99!Hoxa10;;chr10:119913278..119913298,-!p2@Hmga2!0.94!17.53!Hmga2;;chr3:128916868..128916890,+!p1@Pitx2!0.94!10.70!Pitx2;;chr12:58646974..58647003,-!p1@Foxa1!0.94!10.57!Foxa1;;chr7:6649134..6649167,-!p1@Zim1!0.93!42.66!Zim1;;chr11:96153767..96153822,+!p1@Hoxb6!0.93!11.86!Hoxb6;;chr18:61195843..61195864,-!p2@Cdx1!0.93!7.60!Cdx1;;chr6:64679112..64679126,+!p1@Atoh1!0.93!7.47!Atoh1;;chr5:148118809..148118832,-!p5@Cdx2!0.91!7.09!Cdx2;;chr6:52154386..52154407,-!p2@Hoxa5!0.90!9.02!Hoxa5;;chr19:5560600..5560617,-!p1@Ovol1!0.90!8.51!Ovol1;;chr12:39510206..39510249,+!p3@Etv1!0.88!6.57!Etv1;;chr10:126778916..126778974,-!p1@Gli1!0.87!15.08!Gli1;;chr7:19608891..19608895,-!p1@Foxa3!0.86!8.25!Foxa3;;chr10:44178521..44178557,-!p1@Prdm1!0.85!11.08!Prdm1;;chr10:119913792..119913820,-!p5@Hmga2!0.85!10.70!Hmga2;;chr16:14705961..14705978,+!p2@Snai2!0.83!28.87!Snai2;;chr10:44178375..44178390,-!p2@Prdm1!0.83!7.99!Prdm1;;chr7:17642018..17642045,-!p4@Hif3a!0.83!6.70!Hif3a;;chr15:102865088..102865107,+!p1@Hoxc4!0.82!7.60!Hoxc4;;chr19:43686882..43686906,+!p2@Nkx2-3!0.81!5.41!Nkx2-3;;chr7:17642053..17642066,-!p2@Hif3a!0.80!7.73!Hif3a;;chr10:127095407..127095440,+!p3@Stat6!0.80!6.70!Stat6;;chr2:19367259..19367278,+!p1@Ptf1a!0.79!5.15!Ptf1a;;chr3:30039329..30039355,-!p5@Mecom!0.79!5.15!Mecom;;chr11:83664365..83664383,+!p1@Hnf1b!0.78!5.03!Hnf1b;;chr13:31717597..31717613,+!p2@Foxf2!0.78!5.03!Foxf2;;chr12:28027561..28027591,-!p1@Sox11!0.77!35.05!Sox11;;chr1:194979315..194979359,+!p1@Irf6!0.77!32.47!Irf6;;chr6:14851440..14851497,+!p2@Foxp2!0.77!12.89!Foxp2;;chr4:84320893..84320910,-!p1@Bnc2!0.77!11.73!Bnc2;;chr13:55932624..55932641,-!p2@Pitx1!0.77!4.90!Pitx1;;chr14:63890519..63890539,-!p3@Gata4!0.77!4.90!Gata4;;chrX:45245679..45245702,-!p1@Smarca1!0.76!23.20!Smarca1;;chr6:52163319..52163342,-!p1@Hoxa3!0.76!7.22!Hoxa3;;chr15:102865131..102865151,+!p2@Hoxc4!0.76!5.54!Hoxc4;;chr1:138857048..138857071,-!p2@Nr5a2!0.76!4.77!Nr5a2;;chr2:103143336..103143367,-!p1@Ehf!0.75!7.86!Ehf;;chr16:14705925..14705951,+!p1@Snai2!0.74!34.67!Snai2;;chr18:11052642..11052659,+!p1@Gata6!0.74!24.87!Gata6;;chr5:115421065..115421088,-!p1@Hnf1a!0.74!4.51!Hnf1a;;chr3:3508005..3508021,+!p3@Hnf4g!0.74!4.51!Hnf4g;;chr19:10315179..10315241,-!p1@Gm98!0.73!50.90!Gm98;;chr1:120879128..120879183,-!p3@Gli2!0.73!8.89!Gli2;;chr5:148118614..148118625,-!p4@Cdx2!0.72!4.25!Cdx2;;chr13:15555670..15555771,+!p2@Gli3!0.71!11.47!Gli3;;chr17:32506357..32506377,-!p3@Wiz!0.71!9.41!Wiz;;chr6:99216375..99216395,-!p5@Foxp1!0.71!4.12!Foxp1;;chr12:12948633..12948651,-!p1@Mycn!0.70!43.56!Mycn;;chr5:144951153..144951203,+!p1@Bhlha15!0.70!6.19!Bhlha15;;chr2:79296783..79296801,-!p1@Neurod1!0.70!3.99!Neurod1;;chr9:24578720..24578735,-!p1@Tbx20!0.70!3.99!Tbx20;;chr18:11052485..11052508,+!p2@Gata6!0.69!12.11!Gata6;;chr2:74549968..74549996,+!p1@Hoxd3!0.69!5.03!Hoxd3;;chr6:52184901..52184959,-!p2@Hoxa10!0.69!3.87!Hoxa10;;chr2:146047829..146047847,+!p1@Insm1!0.68!7.35!Insm1;;chr9:55388997..55389016,+!p1@Isl2!0.68!3.74!Isl2;;chr14:63890491..63890516,-!p2@Gata4!0.68!3.74!Gata4;;chr11:96180045..96180059,+!p1@Hoxb4!0.67!5.41!Hoxb4;;chr2:115891534..115891589,-!p1@Meis2!0.66!59.28!Meis2;;chr13:44825008..44825066,+!p5@Jarid2!0.66!7.73!Jarid2;;chr2:71384802..71384815,-!p1@Dlx2!0.66!4.64!Dlx2;;chr8:77396650..77396662,+!p4@Isx!0.66!3.61!Isx;;chr12:3891753..3891801,+!p4@Dnmt3a!0.65!6.06!Dnmt3a;;chr2:104966766..104966786,+!p1@Wt1!0.65!5.93!Wt1;;chr11:96143666..96143725,+!p1@Hoxb8!0.65!4.12!Hoxb8;;chr1:138857076..138857105,-!p1@Nr5a2!0.65!3.48!Nr5a2;;chr9:74709695..74709722,+!p1@Onecut1!0.65!3.48!Onecut1;;chr14:63890545..63890560,-!p5@Gata4!0.65!3.48!Gata4;;chr15:102821007..102821021,+!p2@Hoxc8!0.65!3.48!Hoxc8;;chr6:99216360..99216372,-!p8@Foxp1!0.65!3.48!Foxp1;;chr11:18918917..18918944,-!p1@Meis1!0.64!51.42!Meis1;;chr10:44178493..44178520,-!p3@Prdm1!0.64!5.03!Prdm1;;chr6:52195795..52195825,-!p1@Hoxa11!0.64!3.35!Hoxa11;;chr2:74529970..74529997,+!p1@Hoxd10!0.64!3.35!Hoxd10;;chr12:9581262..9581282,+!p1@Osr1!0.63!45.88!Osr1;;chr1:186556375..186556404,-!p3@Hlx!0.63!6.44!Hlx;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!0.63!6.31!Zfhx3;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.63!6.06!Hoxb2;;chr12:3891810..3891829,+!p2@Dnmt3a!0.63!5.54!Dnmt3a;;chr15:102820964..102821006,+!p1@Hoxc8!0.63!3.22!Hoxc8;;chr7:17642177..17642223,-!p3@Hif3a!0.63!3.22!Hif3a;;chr17:48061584..48061601,-!p2@Foxp4!0.62!24.48!Foxp4;;chr11:96145450..96145517,+!p2@Hoxb7!0.62!5.15!Hoxb7;;chr1:57029281..57029326,-!p1@Satb2!0.61!5.15!Satb2;;chr6:14851250..14851277,+!p4@Foxp2!0.61!4.12!Foxp2;;chr5:42155788..42155800,-!p1@Nkx3-2!0.61!3.09!Nkx3-2;;chr11:98614335..98614349,+!p8@Thra!0.61!3.09!Thra;;chr15:102844431..102844445,+!p1@Hoxc5!0.61!3.09!Hoxc5;;chr2:91864300..91864379,-!p2@Creb3l1!0.60!9.92!Creb3l1;;chr18:11052606..11052633,+!p4@Gata6!0.60!8.63!Gata6;;chr2:169458799..169458832,+!p5@Tshz2!0.60!5.41!Tshz2;;chr6:52114821..52114828,-!p1@Hoxa2!0.60!4.90!Hoxa2;;chr1:138846009..138846038,-!p3@Nr5a2!0.60!3.48!Nr5a2;;chr1:173144100..173144138,+!p2@Nr1i3!0.60!2.96!Nr1i3;;chr2:71367871..71367898,+!p1@Dlx1!0.60!2.96!Dlx1;;chr5:29805118..29805137,-!p1@Mnx1!0.60!2.96!Mnx1;;chr6:14851287..14851342,+!p1@Foxp2!0.59!11.08!Foxp2;;chrX:45245644..45245666,-!p2@Smarca1!0.59!10.95!Smarca1;;chr15:78994907..78994926,-!p1@Sox10!0.59!8.51!Sox10;;chr10:44178474..44178487,-!p4@Prdm1!0.59!4.51!Prdm1;;chr10:119913839..119913869,-!p7@Hmga2!0.59!3.87!Hmga2;;chr12:109242266..109242295,-!p1@Bcl11b!0.58!28.35!Bcl11b;;chr2:163372869..163372882,+!p3@Hnf4a!0.58!2.84!Hnf4a;;chr2:104966874..104966907,+!p2@Wt1!0.58!2.84!Wt1;;chr2:153067094..153067130,-!p1@Plagl2!0.57!83.76!Plagl2;;chr1:186556323..186556370,-!p2@Hlx!0.57!8.63!Hlx;;chr7:89137163..89137200,-!p1@Bnc1!0.57!3.48!Bnc1;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.57!2.71!Foxl1;;chr15:102839948..102839975,+!p3@Hoxc6!0.57!2.71!Hoxc6;;chr2:153067079..153067090,-!p2@Plagl2!0.56!6.31!Plagl2;;chr6:52141694..52141715,-!p1@Hoxa4!0.56!3.61!Hoxa4;;chr10:80555320..80555378,-!p1@Creb3l3!0.56!3.22!Creb3l3;;chr14:64562503..64562524,+!p1@Sox7!0.55!18.30!Sox7;;chr14:56443806..56443848,+!p1@Nfatc4!0.55!5.93!Nfatc4;;chr1:189821714..189821761,+!p1@Esrrg!0.55!5.41!Esrrg;;chr2:103143315..103143328,-!p2@Ehf!0.55!2.58!Ehf;;chr11:96160360..96160397,+!p3@Hoxb6!0.55!2.58!Hoxb6;;chr6:15135215..15135244,+!p11@Foxp2!0.55!2.58!Foxp2;;chr13:117099847..117099907,-!p1@Isl1!0.54!5.15!Isl1;;chr4:135129538..135129558,-!p1@Grhl3!0.54!4.12!Grhl3;;chr11:23978291..23978323,+!p7@Bcl11a!0.54!2.45!Bcl11a;;chr4:3865501..3865548,-!p1@Plag1!0.53!15.34!Plag1;;chr13:15555496..15555544,+!p1@Gli3!0.53!10.05!Gli3;;chr15:35225845..35225867,+!p1@Osr2!0.53!7.09!Osr2;;chr14:52639709..52639753,-!p5@Zfp219!0.53!6.19!Zfp219;;chr11:18918820..18918831,-!p4@Meis1!0.53!5.28!Meis1;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!0.53!4.64!Zfhx3;;chr2:74542918..74542971,+!p1@Hoxd8!0.53!3.99!Hoxd8;;chr12:3806536..3806571,+!p3@Dnmt3a!0.52!10.44!Dnmt3a;;chr3:128902837..128902861,+!p3@Pitx2!0.52!2.32!Pitx2;;chr2:74550015..74550057,+!p2@Hoxd3!0.52!2.32!Hoxd3;;chr5:67490474..67490494,-!p2@Phox2b!0.52!2.32!Phox2b;;chr13:30077847..30077906,-!p1@E2f3!0.51!22.42!E2f3;;chr11:74981654..74981658,-!p1@Hic1!0.51!11.21!Hic1;;chr18:11052456..11052477,+!p3@Gata6!0.51!8.63!Gata6;;chr11:85646263..85646278,+!p2@Tbx2!0.51!6.96!Tbx2;;chr7:116154364..116154444,+!p1@Tub!0.51!4.38!Tub;;chr6:52176164..52176195,-!p1@Hoxa9!0.51!2.96!Hoxa9;;chr11:18918959..18918976,-!p2@Meis1!0.50!38.79!Meis1;;chr12:34642510..34642530,+!p1@Twist1!0.50!8.51!Twist1;;chr11:101755669..101755686,-!p1@Meox1!0.50!4.51!Meox1;;chr15:37162796..37162828,+!p1@Grhl2!0.50!4.12!Grhl2;;chr1:194979361..194979373,+!p2@Irf6!0.50!3.22!Irf6;;chr15:102865048..102865073,+!p3@Ho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| |expression_enrichment_score=chr5:148118639..148118715,-!p1@Cdx2!1.80!61.60!Cdx2;;chr3:3634145..3634161,+!p1@Hnf4g!1.70!48.84!Hnf4g;;chr8:59799772..59799789,+!p1@Hand2!1.61!111.60!Hand2;;chr10:22539932..22539956,-!p1@Tcf21!1.61!103.35!Tcf21;;chr2:163332558..163332596,+!p2@Hnf4a!1.60!39.18!Hnf4a;;chr8:77396591..77396639,+!p1@Isx!1.60!38.92!Isx;;chr1:137155026..137155042,-!p1@Elf3!1.57!201.29!Elf3;;chr8:123608252..123608268,+!p1@Foxf1a!1.52!46.78!Foxf1a;;chr3:3508024..3508069,+!p2@Hnf4g!1.46!27.58!Hnf4g;;chr10:88969376..88969395,-!p1@Nr1h4!1.45!27.19!Nr1h4;;chr19:43686789..43686811,+!p1@Nkx2-3!1.41!24.48!Nkx2-3;;chr11:57645506..57645523,-!p1@Hand1!1.35!21.13!Hand1;;chr5:148118840..148118857,-!p2@Cdx2!1.34!21.01!Cdx2;;chr10:86956396..86956411,-!p1@Ascl1!1.32!30.54!Ascl1;;chr13:31717548..31717596,+!p1@Foxf2!1.29!36.34!Foxf2;;chr7:108966820..108966835,+!p1@Phox2a!1.28!17.91!Phox2a;;chr7:17647736..17647772,-!p1@Hif3a!1.24!56.83!Hif3a;;chr10:119913310..119913366,-!p1@Hmga2!1.23!121.78!Hmga2;;chr6:83020355..83020371,-!p1@Tlx2!1.23!16.11!Tlx2;;chr5:67490284..67490302,-!p1@Phox2b!1.23!16.11!Phox2b;;chr10:61595830..61595846,+!p1@Neurog3!1.22!15.59!Neurog3;;chr10:119913546..119913583,-!p3@Hmga2!1.20!31.06!Hmga2;;chr2:164228702..164228719,+!p1@Rbpjl!1.19!14.43!Rbpjl;;chr18:64499706..64499721,+!p2@Onecut2!1.18!19.97!Onecut2;;chr2:163372884..163372904,+!p1@Hnf4a!1.18!14.05!Hnf4a;;chr11:96164821..96164865,+!p1@Hoxb5!1.16!13.53!Hoxb5;;chr14:63864056..63864102,-!p1@Gata4!1.15!22.68!Gata4;;chr13:55932591..55932622,-!p1@Pitx1!1.13!15.21!Pitx1;;chr16:38294860..38294924,-!p1@Nr1i2!1.13!12.50!Nr1i2;;chr10:12810631..12810649,+!p1@Plagl1!1.11!307.22!Plagl1;;chr18:64499674..64499696,+!p1@Onecut2!1.10!20.10!Onecut2;;chr5:148118792..148118806,-!p3@Cdx2!1.10!11.73!Cdx2;;chr6:52154414..52154462,-!p1@Hoxa5!1.09!15.59!Hoxa5;;chr10:119914001..119914078,-!p4@Hmga2!1.06!14.43!Hmga2;;chr2:74583776..74583815,+!p3@Hoxd3!1.06!10.57!Hoxd3;;chr17:27865882..27865901,-!p1@Spdef!1.05!10.18!Spdef;;chr15:102828658..102828678,+!p1@Hoxc6!1.03!9.79!Hoxc6;;chr2:180069370..180069409,-!p1@Gata5!1.02!11.08!Gata5;;chr14:99697871..99697934,+!p1@Klf5!1.01!186.99!Klf5;;chr18:61195865..61195880,-!p1@Cdx1!0.97!8.38!Cdx1;;chr8:77397095..77397127,+!p2@Isx!0.97!8.38!Isx;;chr6:52190467..52190500,-!p1@Hoxa10!0.95!7.99!Hoxa10;;chr10:119913278..119913298,-!p2@Hmga2!0.94!17.53!Hmga2;;chr3:128916868..128916890,+!p1@Pitx2!0.94!10.70!Pitx2;;chr12:58646974..58647003,-!p1@Foxa1!0.94!10.57!Foxa1;;chr7:6649134..6649167,-!p1@Zim1!0.93!42.66!Zim1;;chr11:96153767..96153822,+!p1@Hoxb6!0.93!11.86!Hoxb6;;chr18:61195843..61195864,-!p2@Cdx1!0.93!7.60!Cdx1;;chr6:64679112..64679126,+!p1@Atoh1!0.93!7.47!Atoh1;;chr5:148118809..148118832,-!p5@Cdx2!0.91!7.09!Cdx2;;chr6:52154386..52154407,-!p2@Hoxa5!0.90!9.02!Hoxa5;;chr19:5560600..5560617,-!p1@Ovol1!0.90!8.51!Ovol1;;chr12:39510206..39510249,+!p3@Etv1!0.88!6.57!Etv1;;chr10:126778916..126778974,-!p1@Gli1!0.87!15.08!Gli1;;chr7:19608891..19608895,-!p1@Foxa3!0.86!8.25!Foxa3;;chr10:44178521..44178557,-!p1@Prdm1!0.85!11.08!Prdm1;;chr10:119913792..119913820,-!p5@Hmga2!0.85!10.70!Hmga2;;chr16:14705961..14705978,+!p2@Snai2!0.83!28.87!Snai2;;chr10:44178375..44178390,-!p2@Prdm1!0.83!7.99!Prdm1;;chr7:17642018..17642045,-!p4@Hif3a!0.83!6.70!Hif3a;;chr15:102865088..102865107,+!p1@Hoxc4!0.82!7.60!Hoxc4;;chr19:43686882..43686906,+!p2@Nkx2-3!0.81!5.41!Nkx2-3;;chr7:17642053..17642066,-!p2@Hif3a!0.80!7.73!Hif3a;;chr10:127095407..127095440,+!p3@Stat6!0.80!6.70!Stat6;;chr2:19367259..19367278,+!p1@Ptf1a!0.79!5.15!Ptf1a;;chr3:30039329..30039355,-!p5@Mecom!0.79!5.15!Mecom;;chr11:83664365..83664383,+!p1@Hnf1b!0.78!5.03!Hnf1b;;chr13:31717597..31717613,+!p2@Foxf2!0.78!5.03!Foxf2;;chr12:28027561..28027591,-!p1@Sox11!0.77!35.05!Sox11;;chr1:194979315..194979359,+!p1@Irf6!0.77!32.47!Irf6;;chr6:14851440..14851497,+!p2@Foxp2!0.77!12.89!Foxp2;;chr4:84320893..84320910,-!p1@Bnc2!0.77!11.73!Bnc2;;chr13:55932624..55932641,-!p2@Pitx1!0.77!4.90!Pitx1;;chr14:63890519..63890539,-!p3@Gata4!0.77!4.90!Gata4;;chrX:45245679..45245702,-!p1@Smarca1!0.76!23.20!Smarca1;;chr6:52163319..52163342,-!p1@Hoxa3!0.76!7.22!Hoxa3;;chr15:102865131..102865151,+!p2@Hoxc4!0.76!5.54!Hoxc4;;chr1:138857048..138857071,-!p2@Nr5a2!0.76!4.77!Nr5a2;;chr2:103143336..103143367,-!p1@Ehf!0.75!7.86!Ehf;;chr16:14705925..14705951,+!p1@Snai2!0.74!34.67!Snai2;;chr18:11052642..11052659,+!p1@Gata6!0.74!24.87!Gata6;;chr5:115421065..115421088,-!p1@Hnf1a!0.74!4.51!Hnf1a;;chr3:3508005..3508021,+!p3@Hnf4g!0.74!4.51!Hnf4g;;chr19:10315179..10315241,-!p1@Gm98!0.73!50.90!Gm98;;chr1:120879128..120879183,-!p3@Gli2!0.73!8.89!Gli2;;chr5:148118614..148118625,-!p4@Cdx2!0.72!4.25!Cdx2;;chr13:15555670..15555771,+!p2@Gli3!0.71!11.47!Gli3;;chr17:32506357..32506377,-!p3@Wiz!0.71!9.41!Wiz;;chr6:99216375..99216395,-!p5@Foxp1!0.71!4.12!Foxp1;;chr12:12948633..12948651,-!p1@Mycn!0.70!43.56!Mycn;;chr5:144951153..144951203,+!p1@Bhlha15!0.70!6.19!Bhlha15;;chr2:79296783..79296801,-!p1@Neurod1!0.70!3.99!Neurod1;;chr9:24578720..24578735,-!p1@Tbx20!0.70!3.99!Tbx20;;chr18:11052485..11052508,+!p2@Gata6!0.69!12.11!Gata6;;chr2:74549968..74549996,+!p1@Hoxd3!0.69!5.03!Hoxd3;;chr6:52184901..52184959,-!p2@Hoxa10!0.69!3.87!Hoxa10;;chr2:146047829..146047847,+!p1@Insm1!0.68!7.35!Insm1;;chr9:55388997..55389016,+!p1@Isl2!0.68!3.74!Isl2;;chr14:63890491..63890516,-!p2@Gata4!0.68!3.74!Gata4;;chr11:96180045..96180059,+!p1@Hoxb4!0.67!5.41!Hoxb4;;chr2:115891534..115891589,-!p1@Meis2!0.66!59.28!Meis2;;chr13:44825008..44825066,+!p5@Jarid2!0.66!7.73!Jarid2;;chr2:71384802..71384815,-!p1@Dlx2!0.66!4.64!Dlx2;;chr8:77396650..77396662,+!p4@Isx!0.66!3.61!Isx;;chr12:3891753..3891801,+!p4@Dnmt3a!0.65!6.06!Dnmt3a;;chr2:104966766..104966786,+!p1@Wt1!0.65!5.93!Wt1;;chr11:96143666..96143725,+!p1@Hoxb8!0.65!4.12!Hoxb8;;chr1:138857076..138857105,-!p1@Nr5a2!0.65!3.48!Nr5a2;;chr9:74709695..74709722,+!p1@Onecut1!0.65!3.48!Onecut1;;chr14:63890545..63890560,-!p5@Gata4!0.65!3.48!Gata4;;chr15:102821007..102821021,+!p2@Hoxc8!0.65!3.48!Hoxc8;;chr6:99216360..99216372,-!p8@Foxp1!0.65!3.48!Foxp1;;chr11:18918917..18918944,-!p1@Meis1!0.64!51.42!Meis1;;chr10:44178493..44178520,-!p3@Prdm1!0.64!5.03!Prdm1;;chr6:52195795..52195825,-!p1@Hoxa11!0.64!3.35!Hoxa11;;chr2:74529970..74529997,+!p1@Hoxd10!0.64!3.35!Hoxd10;;chr12:9581262..9581282,+!p1@Osr1!0.63!45.88!Osr1;;chr1:186556375..186556404,-!p3@Hlx!0.63!6.44!Hlx;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!0.63!6.31!Zfhx3;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.63!6.06!Hoxb2;;chr12:3891810..3891829,+!p2@Dnmt3a!0.63!5.54!Dnmt3a;;chr15:102820964..102821006,+!p1@Hoxc8!0.63!3.22!Hoxc8;;chr7:17642177..17642223,-!p3@Hif3a!0.63!3.22!Hif3a;;chr17:48061584..48061601,-!p2@Foxp4!0.62!24.48!Foxp4;;chr11:96145450..96145517,+!p2@Hoxb7!0.62!5.15!Hoxb7;;chr1:57029281..57029326,-!p1@Satb2!0.61!5.15!Satb2;;chr6:14851250..14851277,+!p4@Foxp2!0.61!4.12!Foxp2;;chr5:42155788..42155800,-!p1@Nkx3-2!0.61!3.09!Nkx3-2;;chr11:98614335..98614349,+!p8@Thra!0.61!3.09!Thra;;chr15:102844431..102844445,+!p1@Hoxc5!0.61!3.09!Hoxc5;;chr2:91864300..91864379,-!p2@Creb3l1!0.60!9.92!Creb3l1;;chr18:11052606..11052633,+!p4@Gata6!0.60!8.63!Gata6;;chr2:169458799..169458832,+!p5@Tshz2!0.60!5.41!Tshz2;;chr6:52114821..52114828,-!p1@Hoxa2!0.60!4.90!Hoxa2;;chr1:138846009..138846038,-!p3@Nr5a2!0.60!3.48!Nr5a2;;chr1:173144100..173144138,+!p2@Nr1i3!0.60!2.96!Nr1i3;;chr2:71367871..71367898,+!p1@Dlx1!0.60!2.96!Dlx1;;chr5:29805118..29805137,-!p1@Mnx1!0.60!2.96!Mnx1;;chr6:14851287..14851342,+!p1@Foxp2!0.59!11.08!Foxp2;;chrX:45245644..45245666,-!p2@Smarca1!0.59!10.95!Smarca1;;chr15:78994907..78994926,-!p1@Sox10!0.59!8.51!Sox10;;chr10:44178474..44178487,-!p4@Prdm1!0.59!4.51!Prdm1;;chr10:119913839..119913869,-!p7@Hmga2!0.59!3.87!Hmga2;;chr12:109242266..109242295,-!p1@Bcl11b!0.58!28.35!Bcl11b;;chr2:163372869..163372882,+!p3@Hnf4a!0.58!2.84!Hnf4a;;chr2:104966874..104966907,+!p2@Wt1!0.58!2.84!Wt1;;chr2:153067094..153067130,-!p1@Plagl2!0.57!83.76!Plagl2;;chr1:186556323..186556370,-!p2@Hlx!0.57!8.63!Hlx;;chr7:89137163..89137200,-!p1@Bnc1!0.57!3.48!Bnc1;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.57!2.71!Foxl1;;chr15:102839948..102839975,+!p3@Hoxc6!0.57!2.71!Hoxc6;;chr2:153067079..153067090,-!p2@Plagl2!0.56!6.31!Plagl2;;chr6:52141694..52141715,-!p1@Hoxa4!0.56!3.61!Hoxa4;;chr10:80555320..80555378,-!p1@Creb3l3!0.56!3.22!Creb3l3;;chr14:64562503..64562524,+!p1@Sox7!0.55!18.30!Sox7;;chr14:56443806..56443848,+!p1@Nfatc4!0.55!5.93!Nfatc4;;chr1:189821714..189821761,+!p1@Esrrg!0.55!5.41!Esrrg;;chr2:103143315..103143328,-!p2@Ehf!0.55!2.58!Ehf;;chr11:96160360..96160397,+!p3@Hoxb6!0.55!2.58!Hoxb6;;chr6:15135215..15135244,+!p11@Foxp2!0.55!2.58!Foxp2;;chr13:117099847..117099907,-!p1@Isl1!0.54!5.15!Isl1;;chr4:135129538..135129558,-!p1@Grhl3!0.54!4.12!Grhl3;;chr11:23978291..23978323,+!p7@Bcl11a!0.54!2.45!Bcl11a;;chr4:3865501..3865548,-!p1@Plag1!0.53!15.34!Plag1;;chr13:15555496..15555544,+!p1@Gli3!0.53!10.05!Gli3;;chr15:35225845..35225867,+!p1@Osr2!0.53!7.09!Osr2;;chr14:52639709..52639753,-!p5@Zfp219!0.53!6.19!Zfp219;;chr11:18918820..18918831,-!p4@Meis1!0.53!5.28!Meis1;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!0.53!4.64!Zfhx3;;chr2:74542918..74542971,+!p1@Hoxd8!0.53!3.99!Hoxd8;;chr12:3806536..3806571,+!p3@Dnmt3a!0.52!10.44!Dnmt3a;;chr3:128902837..128902861,+!p3@Pitx2!0.52!2.32!Pitx2;;chr2:74550015..74550057,+!p2@Hoxd3!0.52!2.32!Hoxd3;;chr5:67490474..67490494,-!p2@Phox2b!0.52!2.32!Phox2b;;chr13:30077847..30077906,-!p1@E2f3!0.51!22.42!E2f3;;chr11:74981654..74981658,-!p1@Hic1!0.51!11.21!Hic1;;chr18:11052456..11052477,+!p3@Gata6!0.51!8.63!Gata6;;chr11:85646263..85646278,+!p2@Tbx2!0.51!6.96!Tbx2;;chr7:116154364..116154444,+!p1@Tub!0.51!4.38!Tub;;chr6:52176164..52176195,-!p1@Hoxa9!0.51!2.96!Hoxa9;;chr11:18918959..18918976,-!p2@Meis1!0.50!38.79!Meis1;;chr12:34642510..34642530,+!p1@Twist1!0.50!8.51!Twist1;;chr11:101755669..101755686,-!p1@Meox1!0.50!4.51!Meox1;;chr15:37162796..37162828,+!p1@Grhl2!0.50!4.12!Grhl2;;chr1:194979361..194979373,+!p2@Irf6!0.50!3.22!Irf6;;chr15:102865048..102865073,+!p3@Ho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| ||
Line 45: | Line 45: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10602 | |library_id=CNhs10602 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs10602 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;976 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;976 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/intestine%252c%2520embryo%2520E15.CNhs10602.976-16D8.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/intestine%252c%2520embryo%2520E15.CNhs10602.976-16D8.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520embryo%2520E15.CNhs10602.976-16D8.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520embryo%2520E15.CNhs10602.976-16D8.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520embryo%2520E15.CNhs10602.976-16D8.mm9.nobarcode.rdna.fa.gz | |||
|name=intestine, embryo E15 | |name=intestine, embryo E15 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10602,LSID654,release008,COMPLETED | |profile_hcage=CNhs10602,LSID654,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.00980014126705755,0,0,0,0,0.0297469626626906,-0.227761878805721,0,0,0,0,0.436748386842742,0,0,0,0,0,0,-0.0113460516537959,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.110622409307073,0,0,0,0.334414974944823,0,0.0205644265210278,0.0491985046571506,0.00258239464335652,0.315590377186536,0.368675925008774,0,0,0,0,0,0,0,0,0,0,0,0,0.149985362583204,0,0,0,0,-0.0428469550828748,0,0,0,0.0526429550379996,0,0.0678679092571771,-0.094659747192742,0.121135962033847,-0.0240925561339037,0,0.0526429550379996,0.0189729621390662,0,0.0526429550379996,0,0.0351692922429929,-0.0087020731268271,-0.168546125365801,0.0207575249947466,0,0,0,0,0,0,-0.164494017996533,-0.364443923572355,-0.053812092084755,0,0,0,0,0 | |repeat_enrich_byfamily=-0.00980014126705755,0,0,0,0,0.0297469626626906,-0.227761878805721,0,0,0,0,0.436748386842742,0,0,0,0,0,0,-0.0113460516537959,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.110622409307073,0,0,0,0.334414974944823,0,0.0205644265210278,0.0491985046571506,0.00258239464335652,0.315590377186536,0.368675925008774,0,0,0,0,0,0,0,0,0,0,0,0,0.149985362583204,0,0,0,0,-0.0428469550828748,0,0,0,0.0526429550379996,0,0.0678679092571771,-0.094659747192742,0.121135962033847,-0.0240925561339037,0,0.0526429550379996,0.0189729621390662,0,0.0526429550379996,0,0.0351692922429929,-0.0087020731268271,-0.168546125365801,0.0207575249947466,0,0,0,0,0,0,-0.164494017996533,-0.364443923572355,-0.053812092084755,0,0,0,0,0 | ||
Line 88: | Line 97: | ||
|top_motifs=GFI1:1.680843985;ZNF238:1.40382928843;GZF1:1.34783780103;MYBL2:1.18600479308;NFY{A,B,C}:1.15570200101;FOX{I1,J2}:1.09212632107;SRF:1.05548673558;MAZ:0.989245809122;NANOG:0.988745632541;PDX1:0.988689018662;E2F1..5:0.960149953916;TLX2:0.951493013826;CDX1,2,4:0.92010223409;ZNF423:0.905818828489;HNF1A:0.892285278004;ZNF143:0.838113241766;XCPE1{core}:0.837093478571;ADNP_IRX_SIX_ZHX:0.831543787064;TOPORS:0.812995214432;RREB1:0.781754113604;TFDP1:0.765567051099;EP300:0.765150421649;ZNF148:0.740988315177;PAX1,9:0.737045945326;NKX2-1,4:0.727890006025;RBPJ:0.68205409247;ATF6:0.664845440624;ZNF384:0.654924111357;SOX17:0.648013864693;HNF4A_NR2F1,2:0.64187247537;PATZ1:0.630168686759;GATA6:0.596672934777;MZF1:0.57931279474;GTF2I:0.549726638222;DBP:0.543317763228;GFI1B:0.525431368357;HBP1_HMGB_SSRP1_UBTF:0.518377915013;PBX1:0.518335730357;TEAD1:0.511683018127;SP1:0.494885644396;PRRX1,2:0.491378669123;NANOG{mouse}:0.484766783689;LHX3,4:0.477304517375;ZIC1..3:0.476175504;HMGA1,2:0.471354434932;SNAI1..3:0.468145261193;STAT1,3:0.448563282189;BREu{core}:0.443745265647;PAX6:0.434130904324;ONECUT1,2:0.433921651527;NKX3-2:0.423864918744;RXR{A,B,G}:0.397915471645;SOX{8,9,10}:0.396653216326;TFCP2:0.392816453445;LEF1_TCF7_TCF7L1,2:0.392422300798;SOX2:0.380439704595;HIC1:0.380336159506;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.373130350141;T:0.370882586022;FOXA2:0.367520484053;TLX1..3_NFIC{dimer}:0.36651996692;ZEB1:0.328642082407;HMX1:0.328052181279;CUX2:0.31544644221;HIF1A:0.313080457022;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.311080037282;SPZ1:0.29026718807;MED-1{core}:0.278717963256;AHR_ARNT_ARNT2:0.259556835983;ATF2:0.252682647894;CRX:0.249236047934;NRF1:0.248840702632;TBX4,5:0.224486292656;IKZF2:0.215173810421;OCT4_SOX2{dimer}:0.212395563713;TBP:0.212186417341;GATA4:0.200615432003;EBF1:0.190173953511;HOX{A5,B5}:0.18695314574;IKZF1:0.185284338658;VSX1,2:0.184456815715;bHLH_family:0.183278041882;FOXM1:0.182889736193;FOXQ1:0.178450250684;TFAP2B:0.173390955716;PAX8:0.170674420263;PRDM1:0.163397484754;GLI1..3:0.163198935033;POU6F1:0.155562623463;FOXD3:0.1446012295;POU3F1..4:0.14404989432;GCM1,2:0.143837487302;EN1,2:0.121456039775;NR6A1:0.121342610729;FOX{F1,F2,J1}:0.105009018402;NKX3-1:0.100245149193;HAND1,2:0.0979566862866;HSF1,2:0.0923521896963;ELF1,2,4:0.0720743754009;FOX{D1,D2}:0.0719249864844;SMAD1..7,9:0.066129615503;FOXN1:0.061612840295;ELK1,4_GABP{A,B1}:0.0528886979551;CDC5L:0.0444582665978;TFAP4:0.0426711667956;ZFP161:0.0223906519723;ETS1,2:0.0105464195885;EGR1..3:0.00110556785341;ESRRA:-0.0171291955281;FOS_FOS{B,L1}_JUN{B,D}:-0.0209038376516;GTF2A1,2:-0.0297660018334;TFAP2{A,C}:-0.0455226511356;ALX4:-0.0526857688379;PITX1..3:-0.0677885042478;MYB:-0.0738727687594;NFIX:-0.0751430649263;NKX2-3_NKX2-5:-0.0787156518043;KLF4:-0.0842320876838;MTF1:-0.0887730662655;REST:-0.0959211366121;SPIB:-0.103047361767;MTE{core}:-0.103778234951;NHLH1,2:-0.108179509952;STAT5{A,B}:-0.126902655076;FOSL2:-0.12743353554;ZBTB16:-0.128441133136;MYOD1:-0.128496138578;NFKB1_REL_RELA:-0.137129988509;JUN:-0.151031305475;EVI1:-0.165192841838;RXRA_VDR{dimer}:-0.173140262167;SOX5:-0.179700357358;DMAP1_NCOR{1,2}_SMARC:-0.180759010845;TEF:-0.192079467626;LMO2:-0.199287881289;RFX1:-0.206625043101;TGIF1:-0.207484121288;TP53:-0.215090074965;RUNX1..3:-0.220362705632;AIRE:-0.224463133354;POU2F1..3:-0.24709441402;MYFfamily:-0.256541112787;AR:-0.269833224703;ESR1:-0.27407981195;YY1:-0.279019054642;MEF2{A,B,C,D}:-0.28097727602;SPI1:-0.300092042833;PAX5:-0.305043175062;POU5F1:-0.318623682379;ARID5B:-0.32702505899;NFATC1..3:-0.333658201467;NR3C1:-0.354838855892;HOXA9_MEIS1:-0.358023620854;SREBF1,2:-0.368640189369;RFX2..5_RFXANK_RFXAP:-0.399787372842;FOXP1:-0.413251521073;ZBTB6:-0.425730607894;NKX2-2,8:-0.427131009514;ATF5_CREB3:-0.443119876879;UFEwm:-0.45073389404;FOXL1:-0.468445037327;HLF:-0.49113605636;IRF1,2:-0.495470699311;PAX2:-0.504270329828;ATF4:-0.509223258328;NR1H4:-0.54353063466;CREB1:-0.550087192009;PAX4:-0.589704075664;BACH2:-0.596475404851;MAFB:-0.615056894633;IRF7:-0.617910646688;FOXO1,3,4:-0.619712080206;STAT2,4,6:-0.621792528099;TAL1_TCF{3,4,12}:-0.656437394091;NR5A1,2:-0.659152801519;RORA:-0.67074586376;CEBPA,B_DDIT3:-0.714032502194;POU1F1:-0.718688514449;BPTF:-0.77852957579;HES1:-0.781215046833;NFE2L1:-0.815091942687;NFE2L2:-0.844354500594;NFE2:-0.853557596689;PPARG:-1.00553121349;ALX1:-1.02666965022;HOX{A4,D4}:-1.03280405436;NKX6-1,2:-1.09507768421;FOXP3:-1.24196444063;NFIL3:-1.24301256631 | |top_motifs=GFI1:1.680843985;ZNF238:1.40382928843;GZF1:1.34783780103;MYBL2:1.18600479308;NFY{A,B,C}:1.15570200101;FOX{I1,J2}:1.09212632107;SRF:1.05548673558;MAZ:0.989245809122;NANOG:0.988745632541;PDX1:0.988689018662;E2F1..5:0.960149953916;TLX2:0.951493013826;CDX1,2,4:0.92010223409;ZNF423:0.905818828489;HNF1A:0.892285278004;ZNF143:0.838113241766;XCPE1{core}:0.837093478571;ADNP_IRX_SIX_ZHX:0.831543787064;TOPORS:0.812995214432;RREB1:0.781754113604;TFDP1:0.765567051099;EP300:0.765150421649;ZNF148:0.740988315177;PAX1,9:0.737045945326;NKX2-1,4:0.727890006025;RBPJ:0.68205409247;ATF6:0.664845440624;ZNF384:0.654924111357;SOX17:0.648013864693;HNF4A_NR2F1,2:0.64187247537;PATZ1:0.630168686759;GATA6:0.596672934777;MZF1:0.57931279474;GTF2I:0.549726638222;DBP:0.543317763228;GFI1B:0.525431368357;HBP1_HMGB_SSRP1_UBTF:0.518377915013;PBX1:0.518335730357;TEAD1:0.511683018127;SP1:0.494885644396;PRRX1,2:0.491378669123;NANOG{mouse}:0.484766783689;LHX3,4:0.477304517375;ZIC1..3:0.476175504;HMGA1,2:0.471354434932;SNAI1..3:0.468145261193;STAT1,3:0.448563282189;BREu{core}:0.443745265647;PAX6:0.434130904324;ONECUT1,2:0.433921651527;NKX3-2:0.423864918744;RXR{A,B,G}:0.397915471645;SOX{8,9,10}:0.396653216326;TFCP2:0.392816453445;LEF1_TCF7_TCF7L1,2:0.392422300798;SOX2:0.380439704595;HIC1:0.380336159506;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.373130350141;T:0.370882586022;FOXA2:0.367520484053;TLX1..3_NFIC{dimer}:0.36651996692;ZEB1:0.328642082407;HMX1:0.328052181279;CUX2:0.31544644221;HIF1A:0.313080457022;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.311080037282;SPZ1:0.29026718807;MED-1{core}:0.278717963256;AHR_ARNT_ARNT2:0.259556835983;ATF2:0.252682647894;CRX:0.249236047934;NRF1:0.248840702632;TBX4,5:0.224486292656;IKZF2:0.215173810421;OCT4_SOX2{dimer}:0.212395563713;TBP:0.212186417341;GATA4:0.200615432003;EBF1:0.190173953511;HOX{A5,B5}:0.18695314574;IKZF1:0.185284338658;VSX1,2:0.184456815715;bHLH_family:0.183278041882;FOXM1:0.182889736193;FOXQ1:0.178450250684;TFAP2B:0.173390955716;PAX8:0.170674420263;PRDM1:0.163397484754;GLI1..3:0.163198935033;POU6F1:0.155562623463;FOXD3:0.1446012295;POU3F1..4:0.14404989432;GCM1,2:0.143837487302;EN1,2:0.121456039775;NR6A1:0.121342610729;FOX{F1,F2,J1}:0.105009018402;NKX3-1:0.100245149193;HAND1,2:0.0979566862866;HSF1,2:0.0923521896963;ELF1,2,4:0.0720743754009;FOX{D1,D2}:0.0719249864844;SMAD1..7,9:0.066129615503;FOXN1:0.061612840295;ELK1,4_GABP{A,B1}:0.0528886979551;CDC5L:0.0444582665978;TFAP4:0.0426711667956;ZFP161:0.0223906519723;ETS1,2:0.0105464195885;EGR1..3:0.00110556785341;ESRRA:-0.0171291955281;FOS_FOS{B,L1}_JUN{B,D}:-0.0209038376516;GTF2A1,2:-0.0297660018334;TFAP2{A,C}:-0.0455226511356;ALX4:-0.0526857688379;PITX1..3:-0.0677885042478;MYB:-0.0738727687594;NFIX:-0.0751430649263;NKX2-3_NKX2-5:-0.0787156518043;KLF4:-0.0842320876838;MTF1:-0.0887730662655;REST:-0.0959211366121;SPIB:-0.103047361767;MTE{core}:-0.103778234951;NHLH1,2:-0.108179509952;STAT5{A,B}:-0.126902655076;FOSL2:-0.12743353554;ZBTB16:-0.128441133136;MYOD1:-0.128496138578;NFKB1_REL_RELA:-0.137129988509;JUN:-0.151031305475;EVI1:-0.165192841838;RXRA_VDR{dimer}:-0.173140262167;SOX5:-0.179700357358;DMAP1_NCOR{1,2}_SMARC:-0.180759010845;TEF:-0.192079467626;LMO2:-0.199287881289;RFX1:-0.206625043101;TGIF1:-0.207484121288;TP53:-0.215090074965;RUNX1..3:-0.220362705632;AIRE:-0.224463133354;POU2F1..3:-0.24709441402;MYFfamily:-0.256541112787;AR:-0.269833224703;ESR1:-0.27407981195;YY1:-0.279019054642;MEF2{A,B,C,D}:-0.28097727602;SPI1:-0.300092042833;PAX5:-0.305043175062;POU5F1:-0.318623682379;ARID5B:-0.32702505899;NFATC1..3:-0.333658201467;NR3C1:-0.354838855892;HOXA9_MEIS1:-0.358023620854;SREBF1,2:-0.368640189369;RFX2..5_RFXANK_RFXAP:-0.399787372842;FOXP1:-0.413251521073;ZBTB6:-0.425730607894;NKX2-2,8:-0.427131009514;ATF5_CREB3:-0.443119876879;UFEwm:-0.45073389404;FOXL1:-0.468445037327;HLF:-0.49113605636;IRF1,2:-0.495470699311;PAX2:-0.504270329828;ATF4:-0.509223258328;NR1H4:-0.54353063466;CREB1:-0.550087192009;PAX4:-0.589704075664;BACH2:-0.596475404851;MAFB:-0.615056894633;IRF7:-0.617910646688;FOXO1,3,4:-0.619712080206;STAT2,4,6:-0.621792528099;TAL1_TCF{3,4,12}:-0.656437394091;NR5A1,2:-0.659152801519;RORA:-0.67074586376;CEBPA,B_DDIT3:-0.714032502194;POU1F1:-0.718688514449;BPTF:-0.77852957579;HES1:-0.781215046833;NFE2L1:-0.815091942687;NFE2L2:-0.844354500594;NFE2:-0.853557596689;PPARG:-1.00553121349;ALX1:-1.02666965022;HOX{A4,D4}:-1.03280405436;NKX6-1,2:-1.09507768421;FOXP3:-1.24196444063;NFIL3:-1.24301256631 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:976-16D8;search_select_hide=table117:976-16D8 | |||
}} | }} |
Latest revision as of 19:21, 4 June 2020
Name: | intestine, embryo E15 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs10602 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10602
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.0996 |
1001 | -0.00926 |
1002 | 0.299 |
1003 | -0.00275 |
1004 | 0 |
1005 | 0.042 |
1006 | -0.0642 |
1007 | 0.0652 |
1008 | 0 |
1009 | 0.0534 |
101 | 0.133 |
1010 | 0.142 |
1011 | 0 |
1012 | 0 |
1013 | -0.12 |
1014 | 0.241 |
1015 | 0.171 |
1016 | 0.167 |
1017 | 0 |
1018 | 0.0195 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | -0.0704 |
1023 | 0 |
1024 | 0 |
1025 | 0.676 |
1026 | 0.0188 |
1027 | 0.0526 |
1028 | 0 |
1029 | 0.132 |
103 | 0.142 |
1030 | 0 |
1031 | 0.416 |
1032 | 0.044 |
1033 | 0.0244 |
1034 | 0 |
1035 | 0 |
1036 | 0.125 |
1037 | 0 |
1038 | 0.035 |
1039 | -0.114 |
104 | 0 |
1040 | 0.0951 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10602
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10602
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0445 |
10 | 10 | 0.194 |
100 | 100 | 0.66 |
101 | 101 | 0.577 |
102 | 102 | 0.379 |
103 | 103 | 0.0525 |
104 | 104 | 0.849 |
105 | 105 | 0.665 |
106 | 106 | 0.357 |
107 | 107 | 0.919 |
108 | 108 | 0.987 |
109 | 109 | 0.143 |
11 | 11 | 0.116 |
110 | 110 | 0.238 |
111 | 111 | 0.0212 |
112 | 112 | 0.257 |
113 | 113 | 0.485 |
114 | 114 | 5.87304e-4 |
115 | 115 | 0.207 |
116 | 116 | 0.766 |
117 | 117 | 0.084 |
118 | 118 | 0.514 |
119 | 119 | 0.0996 |
12 | 12 | 0.502 |
120 | 120 | 0.996 |
121 | 121 | 0.797 |
122 | 122 | 0.817 |
123 | 123 | 0.28 |
124 | 124 | 0.274 |
125 | 125 | 0.207 |
126 | 126 | 0.504 |
127 | 127 | 0.388 |
128 | 128 | 0.321 |
129 | 129 | 0.207 |
13 | 13 | 0.946 |
130 | 130 | 0.319 |
131 | 131 | 0.774 |
132 | 132 | 0.707 |
133 | 133 | 0.472 |
134 | 134 | 0.901 |
135 | 135 | 0.81 |
136 | 136 | 0.73 |
137 | 137 | 0.781 |
138 | 138 | 0.061 |
139 | 139 | 0.108 |
14 | 14 | 0.383 |
140 | 140 | 0.0196 |
141 | 141 | 0.545 |
142 | 142 | 0.146 |
143 | 143 | 0.0383 |
144 | 144 | 0.323 |
145 | 145 | 0.909 |
146 | 146 | 0.679 |
147 | 147 | 0.401 |
148 | 148 | 0.759 |
149 | 149 | 0.666 |
15 | 15 | 0.052 |
150 | 150 | 0.832 |
151 | 151 | 0.0663 |
152 | 152 | 0.571 |
153 | 153 | 0.12 |
154 | 154 | 0.31 |
155 | 155 | 0.348 |
156 | 156 | 5.86971e-4 |
157 | 157 | 0.458 |
158 | 158 | 0.34 |
159 | 159 | 0.203 |
160 | 160 | 0.398 |
161 | 161 | 0.917 |
162 | 162 | 0.452 |
163 | 163 | 0.291 |
164 | 164 | 0.15 |
165 | 165 | 0.309 |
166 | 166 | 0.207 |
167 | 167 | 0.341 |
168 | 168 | 0.434 |
169 | 169 | 0.187 |
17 | 17 | 0.209 |
18 | 18 | 0.115 |
19 | 19 | 0.939 |
2 | 2 | 0.619 |
20 | 20 | 0.344 |
21 | 21 | 0.542 |
22 | 22 | 0.582 |
23 | 23 | 0.121 |
24 | 24 | 0.435 |
25 | 25 | 0.281 |
26 | 26 | 0.778 |
27 | 27 | 0.677 |
28 | 28 | 0.117 |
29 | 29 | 0.423 |
3 | 3 | 0.121 |
30 | 30 | 0.572 |
31 | 31 | 0.314 |
32 | 32 | 0.177 |
33 | 33 | 0.685 |
34 | 34 | 0.568 |
35 | 35 | 0.0613 |
36 | 36 | 0.176 |
37 | 37 | 0.0571 |
38 | 38 | 0.527 |
39 | 39 | 0.867 |
4 | 4 | 0.883 |
40 | 40 | 0.891 |
41 | 41 | 0.197 |
42 | 42 | 0.323 |
43 | 43 | 0.121 |
44 | 44 | 0.114 |
45 | 45 | 0.606 |
46 | 46 | 0.392 |
47 | 47 | 0.237 |
48 | 48 | 0.215 |
49 | 49 | 0.0617 |
5 | 5 | 0.114 |
50 | 50 | 0.597 |
51 | 51 | 0.743 |
52 | 52 | 0.371 |
53 | 53 | 0.583 |
54 | 54 | 0.621 |
55 | 55 | 0.395 |
56 | 56 | 0.5 |
57 | 57 | 0.0957 |
58 | 58 | 0.252 |
59 | 59 | 0.211 |
6 | 6 | 0.788 |
60 | 60 | 0.712 |
61 | 61 | 0.962 |
62 | 62 | 0.0157 |
63 | 63 | 0.168 |
64 | 64 | 0.525 |
65 | 65 | 0.268 |
66 | 66 | 0.725 |
67 | 67 | 0.143 |
68 | 68 | 0.289 |
69 | 69 | 0.111 |
7 | 7 | 0.693 |
70 | 70 | 9.77315e-4 |
71 | 71 | 0.227 |
72 | 72 | 0.658 |
73 | 73 | 0.0711 |
74 | 74 | 0.958 |
75 | 75 | 0.0425 |
76 | 76 | 0.303 |
77 | 77 | 0.429 |
78 | 78 | 0.343 |
79 | 79 | 0.364 |
8 | 8 | 0.0378 |
80 | 80 | 0.247 |
81 | 81 | 0.212 |
82 | 82 | 0.018 |
83 | 83 | 0.0978 |
84 | 84 | 0.974 |
85 | 85 | 0.00643 |
86 | 86 | 0.793 |
87 | 87 | 0.948 |
88 | 88 | 0.538 |
89 | 89 | 0.427 |
9 | 9 | 0.936 |
90 | 90 | 0.0126 |
91 | 91 | 0.0684 |
92 | 92 | 0.148 |
93 | 93 | 0.566 |
94 | 94 | 0.0408 |
95 | 95 | 0.12 |
96 | 96 | 0.0873 |
97 | 97 | 0.826 |
98 | 98 | 0.161 |
99 | 99 | 0.483 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10602
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000298 (mouse embryonic day 15 sample)
0011441 (mouse intestine- embryo E15 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)