FFCP PHASE1:Hg19::chr10:71561704..71561747,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1305 | |EntrezGene=1305 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2190 | |HGNC=2190 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TAT6 | |UniProt=Q5TAT6 | ||
|association_with_transcript=16bp_to_ENST00000354547,ENST00000357811,ENST00000398978_5end | |association_with_transcript=16bp_to_ENST00000354547,ENST00000357811,ENST00000398978_5end | ||
|cluster_id=chr10:71561704..71561747,+ | |||
|coexpression_cluster_id=C3039 | |||
|description=CAGE_peak_2_at_COL13A1_5end | |description=CAGE_peak_2_at_COL13A1_5end | ||
|id=chr10:71561704..71561747,+ | |id=chr10:71561704..71561747,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.29e-35!180;CL:0000222!7.18e-25!119;CL:0000183!6.26e-23!59;CL:0000680!1.07e-20!57;CL:0000056!1.07e-20!57;CL:0000355!1.07e-20!57;CL:0000192!1.27e-20!42;CL:0000514!1.27e-20!42;CL:0000187!2.04e-20!54;CL:0000057!3.69e-20!75;CL:0000393!1.35e-18!60;CL:0000211!1.35e-18!60;CL:0000359!2.88e-18!32;CL:0002321!5.70e-14!248;CL:0000220!1.53e-13!246;CL:0002139!8.86e-11!24;CL:0000115!1.11e-10!35;CL:0000071!1.38e-09!18;CL:0002546!1.38e-09!18;CL:0002620!1.05e-08!23;CL:0002078!1.07e-08!44;CL:0002371!3.11e-08!591;CL:0002539!1.20e-07!10;CL:0000144!2.79e-07!625 | |ontology_enrichment_celltype=CL:0000055!2.29e-35!180;CL:0000222!7.18e-25!119;CL:0000183!6.26e-23!59;CL:0000680!1.07e-20!57;CL:0000056!1.07e-20!57;CL:0000355!1.07e-20!57;CL:0000192!1.27e-20!42;CL:0000514!1.27e-20!42;CL:0000187!2.04e-20!54;CL:0000057!3.69e-20!75;CL:0000393!1.35e-18!60;CL:0000211!1.35e-18!60;CL:0000359!2.88e-18!32;CL:0002321!5.70e-14!248;CL:0000220!1.53e-13!246;CL:0002139!8.86e-11!24;CL:0000115!1.11e-10!35;CL:0000071!1.38e-09!18;CL:0002546!1.38e-09!18;CL:0002620!1.05e-08!23;CL:0002078!1.07e-08!44;CL:0002371!3.11e-08!591;CL:0002539!1.20e-07!10;CL:0000144!2.79e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.94e-20;32!CL:0000192;7.13e-18;43!CL:0002139;9.94e-13;24!CL:0000115;8.28e-12;36!CL:0000187;2.43e-11;55!CL:0000071;4.86e-11;18!CL:0002539;2.17e-09;10!CL:0000393;2.69e-09;61!CL:0000211;2.69e-09;61!CL:0000057;3.68e-09;73!CL:0002620;1.82e-08;23!CL:1000413;1.50e-07;9!CL:0002078;2.64e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.65e-26,121;CL:0000192,5.19e-24,43;CL:0000514,5.19e-24,43;CL:0000187,9.87e-22,55;CL:0000680,1.45e-21,58;CL:0000056,1.45e-21,58;CL:0000355,1.45e-21,58;CL:0000057,2.31e-21,76;CL:0000359,2.90e-21,32;CL:0000393,9.35e-20,61;CL:0000211,9.35e-20,61;CL:0002321,1.68e-13,250;CL:0000115,2.16e-13,36;CL:0002139,9.94e-13,24;CL:0000071,3.89e-11,18;CL:0002546,3.89e-11,18;CL:0000048,4.08e-11,427;CL:0000034,5.85e-11,441;CL:0002078,1.09e-10,45;CL:0000723,2.38e-10,433;CL:0002539,1.96e-09,10;CL:0002620,1.56e-08,23;CL:1000413,1.17e-07,9;CL:0000213,5.05e-07,58;CL:0000215,5.05e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;7.13e-18;43!CL:0002546;4.86e-11;18!CL:0000355;7.50e-11;58!CL:0000222;4.28e-07;121 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.49e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!2.23e-35!79;UBERON:0007798!2.23e-35!79;UBERON:0000055!5.79e-29!69;UBERON:0001981!1.29e-27!60;UBERON:0007500!1.29e-27!60;UBERON:0004537!1.29e-27!60;UBERON:0006965!1.29e-27!60;UBERON:0004535!7.78e-26!110;UBERON:0000914!1.48e-25!83;UBERON:0002329!1.48e-25!83;UBERON:0003077!1.48e-25!83;UBERON:0003059!1.48e-25!83;UBERON:0007282!1.48e-25!83;UBERON:0009618!1.48e-25!83;UBERON:0007285!1.48e-25!83;UBERON:0004290!8.93e-25!70;UBERON:0003914!1.93e-24!118;UBERON:0001637!2.03e-24!42;UBERON:0003509!2.03e-24!42;UBERON:0004572!2.03e-24!42;UBERON:0004872!2.31e-24!84;UBERON:0001009!5.22e-24!113;UBERON:0001134!1.87e-21!61;UBERON:0002036!1.87e-21!61;UBERON:0003082!1.87e-21!61;UBERON:0000490!2.96e-21!138;UBERON:0002385!5.87e-21!63;UBERON:0001015!5.87e-21!63;UBERON:0000383!5.87e-21!63;UBERON:0005256!1.41e-20!143;UBERON:0004573!5.03e-20!33;UBERON:0004571!5.03e-20!33;UBERON:0000486!3.10e-19!82;UBERON:0000119!2.08e-17!312;UBERON:0000483!3.84e-16!309;UBERON:0002100!2.79e-15!216;UBERON:0000947!6.71e-13!21;UBERON:0010191!6.71e-13!21;UBERON:0000475!1.97e-12!365;UBERON:0000477!1.98e-12!286;UBERON:0000468!5.03e-12!659;UBERON:0004111!2.42e-11!241;UBERON:0000481!6.59e-11!347;UBERON:0000487!2.10e-10!22;UBERON:0000025!3.08e-10!194;UBERON:0003104!5.26e-10!238;UBERON:0009142!5.26e-10!238;UBERON:0001986!1.38e-09!18;UBERON:0004638!1.38e-09!18;UBERON:0004852!1.38e-09!18;UBERON:0000467!1.39e-09!625;UBERON:0000480!2.04e-09!626;UBERON:0006914!1.47e-08!25;UBERON:0000926!8.57e-08!448;UBERON:0004120!8.57e-08!448;UBERON:0006603!8.57e-08!448;UBERON:0004237!1.20e-07!10;UBERON:0004695!1.20e-07!10;UBERON:0002111!1.20e-07!10;UBERON:0004178!1.20e-07!10;UBERON:0000922!3.98e-07!612;UBERON:0001135!5.36e-07!15 | |ontology_enrichment_uberon=UBERON:0002049!2.23e-35!79;UBERON:0007798!2.23e-35!79;UBERON:0000055!5.79e-29!69;UBERON:0001981!1.29e-27!60;UBERON:0007500!1.29e-27!60;UBERON:0004537!1.29e-27!60;UBERON:0006965!1.29e-27!60;UBERON:0004535!7.78e-26!110;UBERON:0000914!1.48e-25!83;UBERON:0002329!1.48e-25!83;UBERON:0003077!1.48e-25!83;UBERON:0003059!1.48e-25!83;UBERON:0007282!1.48e-25!83;UBERON:0009618!1.48e-25!83;UBERON:0007285!1.48e-25!83;UBERON:0004290!8.93e-25!70;UBERON:0003914!1.93e-24!118;UBERON:0001637!2.03e-24!42;UBERON:0003509!2.03e-24!42;UBERON:0004572!2.03e-24!42;UBERON:0004872!2.31e-24!84;UBERON:0001009!5.22e-24!113;UBERON:0001134!1.87e-21!61;UBERON:0002036!1.87e-21!61;UBERON:0003082!1.87e-21!61;UBERON:0000490!2.96e-21!138;UBERON:0002385!5.87e-21!63;UBERON:0001015!5.87e-21!63;UBERON:0000383!5.87e-21!63;UBERON:0005256!1.41e-20!143;UBERON:0004573!5.03e-20!33;UBERON:0004571!5.03e-20!33;UBERON:0000486!3.10e-19!82;UBERON:0000119!2.08e-17!312;UBERON:0000483!3.84e-16!309;UBERON:0002100!2.79e-15!216;UBERON:0000947!6.71e-13!21;UBERON:0010191!6.71e-13!21;UBERON:0000475!1.97e-12!365;UBERON:0000477!1.98e-12!286;UBERON:0000468!5.03e-12!659;UBERON:0004111!2.42e-11!241;UBERON:0000481!6.59e-11!347;UBERON:0000487!2.10e-10!22;UBERON:0000025!3.08e-10!194;UBERON:0003104!5.26e-10!238;UBERON:0009142!5.26e-10!238;UBERON:0001986!1.38e-09!18;UBERON:0004638!1.38e-09!18;UBERON:0004852!1.38e-09!18;UBERON:0000467!1.39e-09!625;UBERON:0000480!2.04e-09!626;UBERON:0006914!1.47e-08!25;UBERON:0000926!8.57e-08!448;UBERON:0004120!8.57e-08!448;UBERON:0006603!8.57e-08!448;UBERON:0004237!1.20e-07!10;UBERON:0004695!1.20e-07!10;UBERON:0002111!1.20e-07!10;UBERON:0004178!1.20e-07!10;UBERON:0000922!3.98e-07!612;UBERON:0001135!5.36e-07!15 | ||
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| ||
|short_description=p2@COL13A1 | |short_description=p2@COL13A1 | ||
}} | }} |
Latest revision as of 01:16, 19 September 2015
Short description: | p2@COL13A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_COL13A1_5end |
Coexpression cluster: | C3039_Pericytes_Smooth_alveolar_Fibroblast_fibrosarcoma_Lens_Meningeal |
Association with transcript: | 16bp_to_ENST00000354547, ENST00000357811, ENST00000398978_5end |
EntrezGene: | COL13A1 |
HGNC: | 2190 |
UniProt: | Q5TAT6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.65e-26 | 121 |
smooth muscle cell | 5.19e-24 | 43 |
smooth muscle myoblast | 5.19e-24 | 43 |
muscle cell | 9.87e-22 | 55 |
muscle precursor cell | 1.45e-21 | 58 |
myoblast | 1.45e-21 | 58 |
multi-potent skeletal muscle stem cell | 1.45e-21 | 58 |
fibroblast | 2.31e-21 | 76 |
vascular associated smooth muscle cell | 2.90e-21 | 32 |
electrically responsive cell | 9.35e-20 | 61 |
electrically active cell | 9.35e-20 | 61 |
embryonic cell | 1.68e-13 | 250 |
endothelial cell | 2.16e-13 | 36 |
endothelial cell of vascular tree | 9.94e-13 | 24 |
blood vessel endothelial cell | 3.89e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.89e-11 | 18 |
multi fate stem cell | 4.08e-11 | 427 |
stem cell | 5.85e-11 | 441 |
meso-epithelial cell | 1.09e-10 | 45 |
somatic stem cell | 2.38e-10 | 433 |
aortic smooth muscle cell | 1.96e-09 | 10 |
skin fibroblast | 1.56e-08 | 23 |
endothelial cell of artery | 1.17e-07 | 9 |
lining cell | 5.05e-07 | 58 |
barrier cell | 5.05e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.49e-07 | 14 |