FF:490-9F9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004978 | |||
|accession_numbers=CAGE;DRX009148;DRR010022;DRZ001447;DRZ002830;DRZ012797;DRZ014180 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000301,FF:0011374 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr13:83643159..83643226,+!p3@Mef2c!1.51!31.25!Mef2c;;chr12:34642510..34642530,+!p1@Twist1!1.37!69.83!Twist1;;chr5:77543897..77543911,-!p2@Hopx!1.36!41.28!Hopx;;chr3:99057269..99057306,+!p1@Tbx15!1.31!23.73!Tbx15;;chr11:121380640..121380655,-!p1@Zfp750!1.30!30.87!Zfp750;;chr6:55631042..55631102,-!p1@Neurod6!1.30!19.10!Neurod6;;chr7:6649134..6649167,-!p1@Zim1!1.29!97.61!Zim1;;chr1:136186574..136186592,+!p1@Myog!1.29!18.33!Myog;;chr16:25801993..25802014,+!p1@Trp63!1.27!17.75!Trp63;;chr10:106931775..106931798,-!p1@Myf6!1.25!16.78!Myf6;;chr4:87452200..87452229,-!p2@Mllt3!1.20!31.25!Mllt3;;chr4:87452180..87452196,-!p3@Mllt3!1.20!29.13!Mllt3;;chr15:103085660..103085681,-!p1@Nfe2!1.20!22.18!Nfe2;;chr12:74147689..74147711,-!p1@Six1!1.17!29.90!Six1;;chr7:17647736..17647772,-!p1@Hif3a!1.15!45.91!Hif3a;;chr2:120365588..120365602,-!p2@Zfp106!1.15!21.99!Zfp106;;chr13:40829137..40829205,-!p1@Tfap2a!1.14!14.28!Tfap2a;;chr9:74709695..74709722,+!p1@Onecut1!1.13!12.54!Onecut1;;chr13:72766250..72766273,+!p1@Irx2!1.12!19.10!Irx2;;chr11:94981424..94981439,+!p1@Dlx3!1.12!13.89!Dlx3;;chr8:87425854..87425891,+!p1@Klf1!1.10!11.57!Klf1;;chr10:12810631..12810649,+!p1@Plagl1!1.09!294.38!Plagl1;;chr17:44951553..44951586,-!p2@Runx2!1.09!12.54!Runx2;;chr4:135129538..135129558,-!p1@Grhl3!1.08!16.78!Grhl3;;chr9:31720843..31720888,-!p1@Barx2!1.08!12.15!Barx2;;chr19:5560600..5560617,-!p1@Ovol1!1.06!12.73!Ovol1;;chr10:22539932..22539956,-!p1@Tcf21!1.05!27.59!Tcf21;;chr9:91260616..91260653,-!p2@Zic1!1.05!10.22!Zic1;;chr12:37835141..37835194,+!p1@Meox2!1.04!31.64!Meox2;;chr11:121380594..121380609,-!p2@Zfp750!1.02!16.78!Zfp750;;chr10:80555320..80555378,-!p1@Creb3l3!1.01!10.80!Creb3l3;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.00!11.57!Pou3f3;;chr1:165243591..165243625,-!p2@Prrx1!0.99!13.70!Prrx1;;chr13:72766279..72766296,+!p2@Irx2!0.99!13.31!Irx2;;chr12:37835120..37835133,+!p2@Meox2!0.99!12.73!Meox2;;chr17:44951431..44951445,-!p3@Runx2!0.99!8.87!Runx2;;chr3:3634145..3634161,+!p1@Hnf4g!0.99!8.87!Hnf4g;;chr15:102828658..102828678,+!p1@Hoxc6!0.99!8.68!Hoxc6;;chr15:102197405..102197454,-!p1@Sp7!0.99!8.68!Sp7;;chr9:91260594..91260612,-!p1@Zic1!0.98!8.49!Zic1;;chr7:53631837..53631850,+!p1@Myod1!0.98!8.49!Myod1;;chr12:30213247..30213333,+!p1@Myt1l!0.97!8.29!Myt1l;;chr13:55932591..55932622,-!p1@Pitx1!0.96!9.84!Pitx1;;chr1:179374784..179374800,+!p2@Zfp238!0.94!9.07!Zfp238;;chr7:19608891..19608895,-!p1@Foxa3!0.93!9.84!Foxa3;;chr11:96143666..96143725,+!p1@Hoxb8!0.92!8.49!Hoxb8;;chr5:77543935..77543947,-!p4@Hopx!0.91!7.14!Hopx;;chr10:126778916..126778974,-!p1@Gli1!0.90!16.01!Gli1;;chr2:103143336..103143367,-!p1@Ehf!0.90!11.38!Ehf;;chr7:122989594..122989626,-!p1@Sox6!0.90!6.94!Sox6;;chr11:121380611..121380625,-!p3@Zfp750!0.89!8.29!Zfp750;;chr6:6832076..6832092,-!p1@Dlx5!0.89!8.10!Dlx5;;chr7:122989632..122989668,-!p2@Sox6!0.89!6.75!Sox6;;chr9:43013917..43013968,-!p1@Pou2f3!0.89!6.75!Pou2f3;;chr11:98190918..98190951,-!p1@Neurod2!0.89!6.75!Neurod2;;chr8:59799772..59799789,+!p1@Hand2!0.88!19.87!Hand2;;chr10:88969376..88969395,-!p1@Nr1h4!0.88!6.56!Nr1h4;;chr3:95032091..95032183,-!p1@Mllt11!0.87!57.29!Mllt11;;chr2:9800207..9800234,-!p1@Gata3!0.87!20.64!Gata3;;chr1:93698030..93698064,+!p1@Twist2!0.87!13.31!Twist2;;chr7:119885539..119885574,+!p3@Tead1!0.87!6.37!Tead1;;chr6:52190467..52190500,-!p1@Hoxa10!0.87!6.37!Hoxa10;;chr12:109242266..109242295,-!p1@Bcl11b!0.86!54.98!Bcl11b;;chr10:44178521..44178557,-!p1@Prdm1!0.86!11.38!Prdm1;;chr12:54349410..54349461,+!p1@Npas3!0.86!7.72!Npas3;;chr2:172375081..172375105,+!p1@Tfap2c!0.86!6.17!Tfap2c;;chrX:7544943..7545001,-!p1@Gata1!0.86!6.17!Gata1;;chr1:165243379..165243402,-!p3@Prrx1!0.85!9.45!Prrx1;;chr2:28477452..28477483,-!p1@Gfi1b!0.85!7.72!Gfi1b;;chr12:28027561..28027591,-!p1@Sox11!0.83!40.70!Sox11;;chr2:65683890..65683907,+!p1@Csrnp3!0.83!11.38!Csrnp3;;chr17:48015839..48015915,-!p3@Foxp4!0.83!6.94!Foxp4;;chr2:79296783..79296801,-!p1@Neurod1!0.83!5.79!Neurod1;;chr7:116154364..116154444,+!p1@Tub!0.82!10.03!Tub;;chr16:91270004..91270023,+!p1@Olig1!0.82!6.56!Olig1;;chr2:71384802..71384815,-!p1@Dlx2!0.81!6.94!Dlx2;;chr11:85699862..85699920,+!p1@Tbx4!0.81!5.40!Tbx4;;chr19:19185671..19185693,-!p1@Rorb!0.79!13.12!Rorb;;chr13:72101178..72101203,-!p1@Irx1!0.79!8.29!Irx1;;chr15:85566184..85566238,+!p1@Ppara!0.79!7.91!Ppara;;chr13:83643232..83643254,+!p5@Mef2c!0.79!5.21!Mef2c;;chr19:55969923..55969944,+!p6@Tcf7l2!0.79!5.21!Tcf7l2;;chr1:19199236..19199258,+!p1@Tfap2b!0.79!5.21!Tfap2b;;chr11:96880072..96880079,+!p1@Sp6!0.79!5.21!Sp6;;chr5:148118639..148118715,-!p1@Cdx2!0.79!5.21!Cdx2;;chr6:70906450..70906454,+!p1@Foxi3!0.79!5.21!Foxi3;;chr12:37835203..37835218,+!p3@Meox2!0.78!6.17!Meox2;;chr2:163372884..163372904,+!p1@Hnf4a!0.78!5.02!Hnf4a;;chr4:114732112..114732158,+!p1@Tal1!0.77!11.38!Tal1;;chr1:140739014..140739032,-!p1@Lhx9!0.77!6.37!Lhx9;;chr1:169548377..169548430,+!p1@Rxrg!0.77!4.82!Rxrg;;chr12:57796615..57796687,+!p1@Pax9!0.77!4.82!Pax9;;chr3:99057256..99057268,+!p3@Tbx15!0.77!4.82!Tbx15;;chrX:108009761..108009788,+!p1@Pou3f4!0.77!4.82!Pou3f4;;chr1:137155026..137155042,-!p1@Elf3!0.76!30.09!Elf3;;chr15:35225845..35225867,+!p1@Osr2!0.76!12.92!Osr2;;chr9:96159147..96159204,+!p2@Tfdp2!0.76!9.45!Tfdp2;;chr11:101755669..101755686,-!p1@Meox1!0.76!9.07!Meox1;;chr13:99124189..99124205,+!p1@Foxd1!0.76!7.52!Foxd1;;chr6:128250380..128250442,-!p2@Tead4!0.76!6.17!Tead4;;chr2:38206580..38206600,+!p2@Lhx2!0.76!5.98!Lhx2;;chr1:57028125..57028149,-!p2@Satb2!0.75!4.63!Satb2;;chr12:30219426..30219506,+!p2@Myt1l!0.75!4.63!Myt1l;;chr16:38294860..38294924,-!p1@Nr1i2!0.75!4.63!Nr1i2;;chr13:40825465..40825469,-!p2@Tfap2a!0.74!4.44!Tfap2a;;chr3:99057677..99057730,+!p2@Tbx15!0.74!4.44!Tbx15;;chr4:87452167..87452178,-!p8@Mllt3!0.74!4.44!Mllt3;;chr18:80909801..80909819,-!p1@Nfatc1!0.73!28.55!Nfatc1;;chr14:67853632..67853674,+!p3@Ebf2!0.73!5.40!Ebf2;;chr14:99697871..99697934,+!p1@Klf5!0.72!93.75!Klf5;;chr15:102087737..102087801,-!p3@Rarg!0.72!7.33!Rarg;;chr15:102196745..102196769,-!p2@Sp7!0.72!4.24!Sp7;;chr8:94881733..94881790,+!p1@Irx5!0.71!8.68!Irx5;;chr6:6831950..6831985,-!p2@Dlx5!0.71!4.63!Dlx5;;chr9:87626083..87626108,-!p1@Tbx18!0.70!9.65!Tbx18;;chr3:66785857..66785873,-!p1@Shox2!0.70!4.05!Shox2;;chr2:61642631..61642684,+!p1@Tbr1!0.70!4.05!Tbr1;;chr12:37835248..37835260,+!p4@Meox2!0.70!4.05!Meox2;;chr12:25257265..25257294,+!p2@Grhl1!0.70!4.05!Grhl1;;chr2:160192793..160192809,-!p1@Mafb!0.69!67.13!Mafb;;chr4:55545337..55545357,-!p1@Klf4!0.69!65.40!Klf4;;chr1:57029281..57029326,-!p1@Satb2!0.69!6.37!Satb2;;chr2:38206744..38206766,+!p1@Lhx2!0.69!4.82!Lhx2;;chr4:139388835..139388867,-!p1@Pax7!0.69!3.86!Pax7;;chr15:103082088..103082136,-!p2@Nfe2!0.69!3.86!Nfe2;;chr9:71743854..71743909,-!p1@Tcf12!0.68!33.95!Tcf12;;chr7:144506077..144506128,-!p1@Ebf3!0.68!9.65!Ebf3;;chr14:56443806..56443848,+!p1@Nfatc4!0.68!8.29!Nfatc4;;chr3:34548909..34548927,+!p1@Sox2!0.68!6.94!Sox2;;chr15:103085690..103085710,-!p3@Nfe2!0.68!4.24!Nfe2;;chr18:64499674..64499696,+!p1@Onecut2!0.67!6.75!Onecut2;;chrX:90531838..90531861,+!p1@Arx!0.67!4.82!Arx;;chr19:59533221..59533271,+!p1@Emx2!0.67!4.63!Emx2;;chr11:83664365..83664383,+!p1@Hnf1b!0.67!3.67!Hnf1b;;chr10:106923133..106923146,-!p1@Myf5!0.67!3.67!Myf5;;chr3:101814061..101814094,+!p1@Nhlh2!0.67!3.67!Nhlh2;;chr2:71367871..71367898,+!p1@Dlx1!0.67!3.67!Dlx1;;chr9:69137716..69137744,+!p1@Rora!0.66!25.85!Rora;;chr2:91864449..91864492,-!p3@Creb3l1!0.66!6.17!Creb3l1;;chr14:67853425..67853454,+!p1@Ebf2!0.66!5.40!Ebf2;;chr6:52176164..52176195,-!p1@Hoxa9!0.66!4.63!Hoxa9;;chr6:14851440..14851497,+!p2@Foxp2!0.65!9.45!Foxp2;;chr8:87297280..87297326,-!p2@Nfix!0.65!9.07!Nfix;;chr18:64499706..64499721,+!p2@Onecut2!0.65!5.21!Onecut2;;chr9:24578720..24578735,-!p1@Tbx20!0.65!3.47!Tbx20;;chr2:103143315..103143328,-!p2@Ehf!0.65!3.47!Ehf;;chr6:30908793..30908815,-!p1@Klf14!0.65!3.47!Klf14;;chr1:165243792..165243808,-!p1@Prrx1!0.64!13.50!Prrx1;;chr17:25707623..25707639,-!p1@Sox8!0.63!16.40!Sox8;;chr11:116196664..116196679,-!p1@Foxj1!0.63!5.40!Foxj1;;chr19:25746898..25746910,+!p1@Dmrt2!0.63!5.21!Dmrt2;;chr3:5218516..5218544,+!p2@Zfhx4!0.63!5.21!Zfhx4;;chr11:11584970..11585030,+!p2@Ikzf1!0.63!5.02!Ikzf1;;chr7:144505957..144505972,-!p2@Ebf3!0.63!4.24!Ebf3;;chr6:6831928..6831949,-!p3@Dlx5!0.63!3.28!Dlx5;;chr1:57028538..57028553,-!p6@Satb2!0.63!3.28!Satb2;;chr14:49287186..49287225,-!p1@Otx2!0.63!3.28!Otx2;;chr10:106931803..106931817,-!p2@Myf6!0.63!3.28!Myf6;;chr17:86087592..86087615,-!p1@Six2!0.63!3.28!Six2;;chr7:35904304..35904320,+!p1@Cebpa!0.62!77.36!Cebpa;;chr12:34642682..34642753,+!p2@Twist1!0.62!9.45!Twist1;;chr8:94325321..94325366,-!p1@Irx3!0.62!8.68!Irx3;;chr13:31717548..31717596,+!p1@Foxf2!0.62!6.94!Foxf2;;chr12:58646974..58647003,-!p1@Foxa1!0.62!4.44!Foxa1;;chr8:94325814..94325839,-!p2@Irx3!0.61!7.14!Irx3;;chr7:144505980..144506010,-!p3@Ebf3!0.61!3.86!Ebf3;;chr16:91225808..91225824,+!p1@Olig2!0.61!3.09!Olig2;;chr1:169528720..169528749,+!p6@Rxrg!0.61!3.09!Rxrg;;chr1:57028556..57028583,-!p5@Satb2!0.61!3.09!Satb2;;chr2:103264213..103264233,+!p1@Elf5!0.61!3.09!Elf5;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.60!13.89!Ppp1r13l;;chr4:148178559..148178603,+!p1@Casz1!0.60!9.84!Casz1;;chr4:13670571..13670625,+!p1@Runx1t1!0.60!9.45!Runx1t1;;chr2:74542918..74542971,+!p1@Hoxd8!0.60!4.82!Hoxd8;;chr8:123608252..123608268,+!p1@Foxf1a!0.60!4.82!Foxf1a;;chr7:6683123..6683142,-!p1@Peg3!0.59!182.49!Peg3;;chr13:117099847..117099907,-!p1@Isl1!0.59!5.98!Isl1;;chr1:14746065..14746079,-!p1@Msc!0.59!3.67!Msc;;chr1:93698068..93698085,+!p2@Twist2!0.59!3.47!Twist2;;chr2:164228702..164228719,+!p1@Rbpjl!0.59!2.89!Rbpjl;;chr15:76352832..76352900,-!p1@Scrt1!0.59!2.89!Scrt1;;chr15:50714356..50714368,-!p14@Trps1!0.59!2.89!Trps1;;chr7:17642177..17642223,-!p3@Hif3a!0.59!2.89!Hif3a;;chr6:52195795..52195825,-!p1@Hoxa11!0.59!2.89!Hoxa11;;chr6:52184901..52184959,-!p2@Hoxa10!0.59!2.89!Hoxa10;;chr3:5218629..5218684,+!p1@Zfhx4!0.58!10.80!Zfhx4;;chr12:25257141..25257173,+!p1@Grhl1!0.58!6.56!Grhl1;;chr11:44430989..44431015,+!p4@Ebf1!0.58!5.59!Ebf1;;chr14:638640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62828,+!p1@Grhl2!0.23!1.74!Grhl2;;chr7:17199962..17199972,-!p7@Grlf1!0.23!1.54!Grlf1;;chr9:106355684..106355744,+!p5@Pcbp4!0.23!1.54!Pcbp4;;chr17:32525943..32525992,-!p4@Wiz!0.23!1.54!Wiz;;chr17:46693053..46693064,-!p4@Srf!0.23!1.35!Srf;;chr7:17642053..17642066,-!p2@Hif3a!0.23!1.35!Hif3a;;chr5:125659510..125659517,-!p3@Ncor2!0.23!1.35!Ncor2;;chr10:62328079..62328093,-!p5@Tet1!0.23!1.35!Tet1;;chr11:44430877..44430899,+!p6@Ebf1!0.23!1.16!Ebf1;;chr4:32325955..32325971,+!p3@Bach2!0.23!1.16!Bach2;;chr3:133207369..133207376,-!p3@Tet2!0.23!1.16!Tet2;;chr4:135736690..135736705,+!p6@E2f2!0.23!0.96!E2f2;;chr17:48025139..48025166,-!p8@Foxp4!0.23!0.96!Foxp4;;chr9:72122748..72122757,+!p4@Zfp280d!0.23!0.96!Zfp280d;;chr9:56266612..56266654,+!p1@Hmg20a!0.22!41.47!Hmg20a;;chr5:134790507..134790546,-!p1@Gtf2i!0.22!36.27!Gtf2i;;chr18:5591866..5591900,+!p1@Zeb1!0.22!36.07!Zeb1;;chr4:97444297..97444323,+!p2@Nfia!0.22!22.76!Nfia;;chr11:18918959..18918976,-!p2@Meis1!0.22!19.87!Meis1;;chr16:4594683..4594735,+!p2@Glis2!0.22!18.71!Glis2;;chr15:102455867..102455930,-!p1@Atf7!0.22!18.52!Atf7;;chr4:120488308..120488366,-!p1@Nfyc!0.22!7.91!Nfyc;;chr6:65728988..65729056,+!p1@Prdm5!0.22!6.75!Prdm5;;chr2:48805044..48805063,+!p3@Mbd5!0.22!5.79!Mbd5;;chr14:22807107..22807119,-!p2@Zfp503!0.22!5.79!Zfp503;;chr9:71959562..71959624,-!p3@Tcf12!0.22!4.44!Tcf12;;chr18:83080231..83080254,+!p3@Zfp516!0.22!4.24!Zfp516;;chr13:15555079..15555136,+!p3@Gli3!0.22!4.05!Gli3;;chr14:100683912..100683947,-!p2@Klf12!0.22!3.86!Klf12;;chr18:11052456..11052477,+!p3@Gata6!0.22!3.86!Gata6;;chr9:96653072..96653154,-!p1@Zbtb38!0.22!3.28!Zbtb38;;chr14:17407970..17408015,-!p2@Rarb!0.22!3.28!Rarb;;chr16:92826249..92826325,-!p1@Runx1!0.22!2.89!Runx1;;chr18:83080255..83080277,+!p4@Zfp516!0.22!2.89!Zfp516;;chr6:72739234..72739256,-!p2@Tcf7l1!0.22!2.70!Tcf7l1;;chr7:135019147..135019187,-!p3@Zfp668!0.22!2.51!Zfp668;;chr17:46520518..46520571,+!p2@Zfp318!0.22!2.51!Zfp318;;chr3:135271185..135271254,-!p4@Nfkb1!0.22!1.93!Nfkb1;;chr10:80598209..80598236,+!p4@Zbtb7a!0.22!1.74!Zbtb7a;;chr15:50721239..50721260,-!p9@Trps1!0.22!1.74!Trps1;;chr10:62327990..62328025,-!p2@Tet1!0.22!1.54!Tet1;;chr16:50429979..50429997,-!p4@Bbx!0.22!1.54!Bbx;;chr2:168032516..168032525,-!p5@Adnp!0.22!1.54!Adnp;;chr2:152223586..152223604,-!p5@Sox12!0.22!1.35!Sox12;;chr3:9610233..9610247,-!p4@Zfp704!0.22!1.35!Zfp704;;chr19:7342786..7342803,+!p2@Rcor2!0.22!1.16!Rcor2;;chr5:120120981..120120992,+!p5@Tbx3!0.22!1.16!Tbx3;;chr17:44873258..44873281,-!p5@Runx2!0.22!1.16!Runx2;;chr4:107107175..107107204,+!p1@Glis1!0.22!0.96!Glis1;;chr4:6917793..6917809,-!p5@Tox!0.22!0.96!Tox;;chr4:13670441..13670463,+!p8@Runx1t1!0.22!0.96!Runx1t1;;chr4:55545152..55545194,-!p3@Klf4!0.22!0.96!Klf4;;chr12:109241852..109241873,-!p4@Bcl11b!0.22!0.96!Bcl11b;;chr6:14851344..14851364,+!p6@Foxp2!0.22!0.96!Foxp2;;chr2:27532754..27532815,+!p1@Rxra!0.21!42.25!Rxra;;chr13:48356475..48356492,+!p1@Id4!0.21!31.64!Id4;;chr6:48395743..48395820,-!p1@Zfp467!0.21!30.87!Zfp467;;chr18:69753015..69753104,+!p1@Tcf4!0.21!18.90!Tcf4;;chr11:18918917..18918944,-!p1@Meis1!0.21!18.52!Meis1;;chr5:138187341..138187406,+!p3@Tsc22d4!0.21!15.24!Tsc22d4;;chr11:53164285..53164302,+!p3@Aff4!0.21!11.77!Aff4;;chr15:81633165..81633188,+!p2@Tef!0.21!11.38!Tef;; | |expression_enrichment_score=chr13:83643159..83643226,+!p3@Mef2c!1.51!31.25!Mef2c;;chr12:34642510..34642530,+!p1@Twist1!1.37!69.83!Twist1;;chr5:77543897..77543911,-!p2@Hopx!1.36!41.28!Hopx;;chr3:99057269..99057306,+!p1@Tbx15!1.31!23.73!Tbx15;;chr11:121380640..121380655,-!p1@Zfp750!1.30!30.87!Zfp750;;chr6:55631042..55631102,-!p1@Neurod6!1.30!19.10!Neurod6;;chr7:6649134..6649167,-!p1@Zim1!1.29!97.61!Zim1;;chr1:136186574..136186592,+!p1@Myog!1.29!18.33!Myog;;chr16:25801993..25802014,+!p1@Trp63!1.27!17.75!Trp63;;chr10:106931775..106931798,-!p1@Myf6!1.25!16.78!Myf6;;chr4:87452200..87452229,-!p2@Mllt3!1.20!31.25!Mllt3;;chr4:87452180..87452196,-!p3@Mllt3!1.20!29.13!Mllt3;;chr15:103085660..103085681,-!p1@Nfe2!1.20!22.18!Nfe2;;chr12:74147689..74147711,-!p1@Six1!1.17!29.90!Six1;;chr7:17647736..17647772,-!p1@Hif3a!1.15!45.91!Hif3a;;chr2:120365588..120365602,-!p2@Zfp106!1.15!21.99!Zfp106;;chr13:40829137..40829205,-!p1@Tfap2a!1.14!14.28!Tfap2a;;chr9:74709695..74709722,+!p1@Onecut1!1.13!12.54!Onecut1;;chr13:72766250..72766273,+!p1@Irx2!1.12!19.10!Irx2;;chr11:94981424..94981439,+!p1@Dlx3!1.12!13.89!Dlx3;;chr8:87425854..87425891,+!p1@Klf1!1.10!11.57!Klf1;;chr10:12810631..12810649,+!p1@Plagl1!1.09!294.38!Plagl1;;chr17:44951553..44951586,-!p2@Runx2!1.09!12.54!Runx2;;chr4:135129538..135129558,-!p1@Grhl3!1.08!16.78!Grhl3;;chr9:31720843..31720888,-!p1@Barx2!1.08!12.15!Barx2;;chr19:5560600..5560617,-!p1@Ovol1!1.06!12.73!Ovol1;;chr10:22539932..22539956,-!p1@Tcf21!1.05!27.59!Tcf21;;chr9:91260616..91260653,-!p2@Zic1!1.05!10.22!Zic1;;chr12:37835141..37835194,+!p1@Meox2!1.04!31.64!Meox2;;chr11:121380594..121380609,-!p2@Zfp750!1.02!16.78!Zfp750;;chr10:80555320..80555378,-!p1@Creb3l3!1.01!10.80!Creb3l3;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.00!11.57!Pou3f3;;chr1:165243591..165243625,-!p2@Prrx1!0.99!13.70!Prrx1;;chr13:72766279..72766296,+!p2@Irx2!0.99!13.31!Irx2;;chr12:37835120..37835133,+!p2@Meox2!0.99!12.73!Meox2;;chr17:44951431..44951445,-!p3@Runx2!0.99!8.87!Runx2;;chr3:3634145..3634161,+!p1@Hnf4g!0.99!8.87!Hnf4g;;chr15:102828658..102828678,+!p1@Hoxc6!0.99!8.68!Hoxc6;;chr15:102197405..102197454,-!p1@Sp7!0.99!8.68!Sp7;;chr9:91260594..91260612,-!p1@Zic1!0.98!8.49!Zic1;;chr7:53631837..53631850,+!p1@Myod1!0.98!8.49!Myod1;;chr12:30213247..30213333,+!p1@Myt1l!0.97!8.29!Myt1l;;chr13:55932591..55932622,-!p1@Pitx1!0.96!9.84!Pitx1;;chr1:179374784..179374800,+!p2@Zfp238!0.94!9.07!Zfp238;;chr7:19608891..19608895,-!p1@Foxa3!0.93!9.84!Foxa3;;chr11:96143666..96143725,+!p1@Hoxb8!0.92!8.49!Hoxb8;;chr5:77543935..77543947,-!p4@Hopx!0.91!7.14!Hopx;;chr10:126778916..126778974,-!p1@Gli1!0.90!16.01!Gli1;;chr2:103143336..103143367,-!p1@Ehf!0.90!11.38!Ehf;;chr7:122989594..122989626,-!p1@Sox6!0.90!6.94!Sox6;;chr11:121380611..121380625,-!p3@Zfp750!0.89!8.29!Zfp750;;chr6:6832076..6832092,-!p1@Dlx5!0.89!8.10!Dlx5;;chr7:122989632..122989668,-!p2@Sox6!0.89!6.75!Sox6;;chr9:43013917..43013968,-!p1@Pou2f3!0.89!6.75!Pou2f3;;chr11:98190918..98190951,-!p1@Neurod2!0.89!6.75!Neurod2;;chr8:59799772..59799789,+!p1@Hand2!0.88!19.87!Hand2;;chr10:88969376..88969395,-!p1@Nr1h4!0.88!6.56!Nr1h4;;chr3:95032091..95032183,-!p1@Mllt11!0.87!57.29!Mllt11;;chr2:9800207..9800234,-!p1@Gata3!0.87!20.64!Gata3;;chr1:93698030..93698064,+!p1@Twist2!0.87!13.31!Twist2;;chr7:119885539..119885574,+!p3@Tead1!0.87!6.37!Tead1;;chr6:52190467..52190500,-!p1@Hoxa10!0.87!6.37!Hoxa10;;chr12:109242266..109242295,-!p1@Bcl11b!0.86!54.98!Bcl11b;;chr10:44178521..44178557,-!p1@Prdm1!0.86!11.38!Prdm1;;chr12:54349410..54349461,+!p1@Npas3!0.86!7.72!Npas3;;chr2:172375081..172375105,+!p1@Tfap2c!0.86!6.17!Tfap2c;;chrX:7544943..7545001,-!p1@Gata1!0.86!6.17!Gata1;;chr1:165243379..165243402,-!p3@Prrx1!0.85!9.45!Prrx1;;chr2:28477452..28477483,-!p1@Gfi1b!0.85!7.72!Gfi1b;;chr12:28027561..28027591,-!p1@Sox11!0.83!40.70!Sox11;;chr2:65683890..65683907,+!p1@Csrnp3!0.83!11.38!Csrnp3;;chr17:48015839..48015915,-!p3@Foxp4!0.83!6.94!Foxp4;;chr2:79296783..79296801,-!p1@Neurod1!0.83!5.79!Neurod1;;chr7:116154364..116154444,+!p1@Tub!0.82!10.03!Tub;;chr16:91270004..91270023,+!p1@Olig1!0.82!6.56!Olig1;;chr2:71384802..71384815,-!p1@Dlx2!0.81!6.94!Dlx2;;chr11:85699862..85699920,+!p1@Tbx4!0.81!5.40!Tbx4;;chr19:19185671..19185693,-!p1@Rorb!0.79!13.12!Rorb;;chr13:72101178..72101203,-!p1@Irx1!0.79!8.29!Irx1;;chr15:85566184..85566238,+!p1@Ppara!0.79!7.91!Ppara;;chr13:83643232..83643254,+!p5@Mef2c!0.79!5.21!Mef2c;;chr19:55969923..55969944,+!p6@Tcf7l2!0.79!5.21!Tcf7l2;;chr1:19199236..19199258,+!p1@Tfap2b!0.79!5.21!Tfap2b;;chr11:96880072..96880079,+!p1@Sp6!0.79!5.21!Sp6;;chr5:148118639..148118715,-!p1@Cdx2!0.79!5.21!Cdx2;;chr6:70906450..70906454,+!p1@Foxi3!0.79!5.21!Foxi3;;chr12:37835203..37835218,+!p3@Meox2!0.78!6.17!Meox2;;chr2:163372884..163372904,+!p1@Hnf4a!0.78!5.02!Hnf4a;;chr4:114732112..114732158,+!p1@Tal1!0.77!11.38!Tal1;;chr1:140739014..140739032,-!p1@Lhx9!0.77!6.37!Lhx9;;chr1:169548377..169548430,+!p1@Rxrg!0.77!4.82!Rxrg;;chr12:57796615..57796687,+!p1@Pax9!0.77!4.82!Pax9;;chr3:99057256..99057268,+!p3@Tbx15!0.77!4.82!Tbx15;;chrX:108009761..108009788,+!p1@Pou3f4!0.77!4.82!Pou3f4;;chr1:137155026..137155042,-!p1@Elf3!0.76!30.09!Elf3;;chr15:35225845..35225867,+!p1@Osr2!0.76!12.92!Osr2;;chr9:96159147..96159204,+!p2@Tfdp2!0.76!9.45!Tfdp2;;chr11:101755669..101755686,-!p1@Meox1!0.76!9.07!Meox1;;chr13:99124189..99124205,+!p1@Foxd1!0.76!7.52!Foxd1;;chr6:128250380..128250442,-!p2@Tead4!0.76!6.17!Tead4;;chr2:38206580..38206600,+!p2@Lhx2!0.76!5.98!Lhx2;;chr1:57028125..57028149,-!p2@Satb2!0.75!4.63!Satb2;;chr12:30219426..30219506,+!p2@Myt1l!0.75!4.63!Myt1l;;chr16:38294860..38294924,-!p1@Nr1i2!0.75!4.63!Nr1i2;;chr13:40825465..40825469,-!p2@Tfap2a!0.74!4.44!Tfap2a;;chr3:99057677..99057730,+!p2@Tbx15!0.74!4.44!Tbx15;;chr4:87452167..87452178,-!p8@Mllt3!0.74!4.44!Mllt3;;chr18:80909801..80909819,-!p1@Nfatc1!0.73!28.55!Nfatc1;;chr14:67853632..67853674,+!p3@Ebf2!0.73!5.40!Ebf2;;chr14:99697871..99697934,+!p1@Klf5!0.72!93.75!Klf5;;chr15:102087737..102087801,-!p3@Rarg!0.72!7.33!Rarg;;chr15:102196745..102196769,-!p2@Sp7!0.72!4.24!Sp7;;chr8:94881733..94881790,+!p1@Irx5!0.71!8.68!Irx5;;chr6:6831950..6831985,-!p2@Dlx5!0.71!4.63!Dlx5;;chr9:87626083..87626108,-!p1@Tbx18!0.70!9.65!Tbx18;;chr3:66785857..66785873,-!p1@Shox2!0.70!4.05!Shox2;;chr2:61642631..61642684,+!p1@Tbr1!0.70!4.05!Tbr1;;chr12:37835248..37835260,+!p4@Meox2!0.70!4.05!Meox2;;chr12:25257265..25257294,+!p2@Grhl1!0.70!4.05!Grhl1;;chr2:160192793..160192809,-!p1@Mafb!0.69!67.13!Mafb;;chr4:55545337..55545357,-!p1@Klf4!0.69!65.40!Klf4;;chr1:57029281..57029326,-!p1@Satb2!0.69!6.37!Satb2;;chr2:38206744..38206766,+!p1@Lhx2!0.69!4.82!Lhx2;;chr4:139388835..139388867,-!p1@Pax7!0.69!3.86!Pax7;;chr15:103082088..103082136,-!p2@Nfe2!0.69!3.86!Nfe2;;chr9:71743854..71743909,-!p1@Tcf12!0.68!33.95!Tcf12;;chr7:144506077..144506128,-!p1@Ebf3!0.68!9.65!Ebf3;;chr14:56443806..56443848,+!p1@Nfatc4!0.68!8.29!Nfatc4;;chr3:34548909..34548927,+!p1@Sox2!0.68!6.94!Sox2;;chr15:103085690..103085710,-!p3@Nfe2!0.68!4.24!Nfe2;;chr18:64499674..64499696,+!p1@Onecut2!0.67!6.75!Onecut2;;chrX:90531838..90531861,+!p1@Arx!0.67!4.82!Arx;;chr19:59533221..59533271,+!p1@Emx2!0.67!4.63!Emx2;;chr11:83664365..83664383,+!p1@Hnf1b!0.67!3.67!Hnf1b;;chr10:106923133..106923146,-!p1@Myf5!0.67!3.67!Myf5;;chr3:101814061..101814094,+!p1@Nhlh2!0.67!3.67!Nhlh2;;chr2:71367871..71367898,+!p1@Dlx1!0.67!3.67!Dlx1;;chr9:69137716..69137744,+!p1@Rora!0.66!25.85!Rora;;chr2:91864449..91864492,-!p3@Creb3l1!0.66!6.17!Creb3l1;;chr14:67853425..67853454,+!p1@Ebf2!0.66!5.40!Ebf2;;chr6:52176164..52176195,-!p1@Hoxa9!0.66!4.63!Hoxa9;;chr6:14851440..14851497,+!p2@Foxp2!0.65!9.45!Foxp2;;chr8:87297280..87297326,-!p2@Nfix!0.65!9.07!Nfix;;chr18:64499706..64499721,+!p2@Onecut2!0.65!5.21!Onecut2;;chr9:24578720..24578735,-!p1@Tbx20!0.65!3.47!Tbx20;;chr2:103143315..103143328,-!p2@Ehf!0.65!3.47!Ehf;;chr6:30908793..30908815,-!p1@Klf14!0.65!3.47!Klf14;;chr1:165243792..165243808,-!p1@Prrx1!0.64!13.50!Prrx1;;chr17:25707623..25707639,-!p1@Sox8!0.63!16.40!Sox8;;chr11:116196664..116196679,-!p1@Foxj1!0.63!5.40!Foxj1;;chr19:25746898..25746910,+!p1@Dmrt2!0.63!5.21!Dmrt2;;chr3:5218516..5218544,+!p2@Zfhx4!0.63!5.21!Zfhx4;;chr11:11584970..11585030,+!p2@Ikzf1!0.63!5.02!Ikzf1;;chr7:144505957..144505972,-!p2@Ebf3!0.63!4.24!Ebf3;;chr6:6831928..6831949,-!p3@Dlx5!0.63!3.28!Dlx5;;chr1:57028538..57028553,-!p6@Satb2!0.63!3.28!Satb2;;chr14:49287186..49287225,-!p1@Otx2!0.63!3.28!Otx2;;chr10:106931803..106931817,-!p2@Myf6!0.63!3.28!Myf6;;chr17:86087592..86087615,-!p1@Six2!0.63!3.28!Six2;;chr7:35904304..35904320,+!p1@Cebpa!0.62!77.36!Cebpa;;chr12:34642682..34642753,+!p2@Twist1!0.62!9.45!Twist1;;chr8:94325321..94325366,-!p1@Irx3!0.62!8.68!Irx3;;chr13:31717548..31717596,+!p1@Foxf2!0.62!6.94!Foxf2;;chr12:58646974..58647003,-!p1@Foxa1!0.62!4.44!Foxa1;;chr8:94325814..94325839,-!p2@Irx3!0.61!7.14!Irx3;;chr7:144505980..144506010,-!p3@Ebf3!0.61!3.86!Ebf3;;chr16:91225808..91225824,+!p1@Olig2!0.61!3.09!Olig2;;chr1:169528720..169528749,+!p6@Rxrg!0.61!3.09!Rxrg;;chr1:57028556..57028583,-!p5@Satb2!0.61!3.09!Satb2;;chr2:103264213..103264233,+!p1@Elf5!0.61!3.09!Elf5;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.60!13.89!Ppp1r13l;;chr4:148178559..148178603,+!p1@Casz1!0.60!9.84!Casz1;;chr4:13670571..13670625,+!p1@Runx1t1!0.60!9.45!Runx1t1;;chr2:74542918..74542971,+!p1@Hoxd8!0.60!4.82!Hoxd8;;chr8:123608252..123608268,+!p1@Foxf1a!0.60!4.82!Foxf1a;;chr7:6683123..6683142,-!p1@Peg3!0.59!182.49!Peg3;;chr13:117099847..117099907,-!p1@Isl1!0.59!5.98!Isl1;;chr1:14746065..14746079,-!p1@Msc!0.59!3.67!Msc;;chr1:93698068..93698085,+!p2@Twist2!0.59!3.47!Twist2;;chr2:164228702..164228719,+!p1@Rbpjl!0.59!2.89!Rbpjl;;chr15:76352832..76352900,-!p1@Scrt1!0.59!2.89!Scrt1;;chr15:50714356..50714368,-!p14@Trps1!0.59!2.89!Trps1;;chr7:17642177..17642223,-!p3@Hif3a!0.59!2.89!Hif3a;;chr6:52195795..52195825,-!p1@Hoxa11!0.59!2.89!Hoxa11;;chr6:52184901..52184959,-!p2@Hoxa10!0.59!2.89!Hoxa10;;chr3:5218629..5218684,+!p1@Zfhx4!0.58!10.80!Zfhx4;;chr12:25257141..25257173,+!p1@Grhl1!0.58!6.56!Grhl1;;chr11:44430989..44431015,+!p4@Ebf1!0.58!5.59!Ebf1;;chr14:638640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| ||
|ffid_belonging_in_development=FF:0000294 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 36: | Line 42: | ||
|has_quality= | |has_quality= | ||
|id=FF:490-9F9 | |id=FF:490-9F9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011374 | ||
|is_obsolete= | |||
|library_id=CNhs10513 | |||
|library_id_phase_based=2:CNhs10513 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;490 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;490 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17%252e5.CNhs10513.490-9F9.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17%252e5.CNhs10513.490-9F9.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17%252e5.CNhs10513.490-9F9.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17%252e5.CNhs10513.490-9F9.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17%252e5.CNhs10513.490-9F9.mm9.nobarcode.rdna.fa.gz | |||
|name=whole body, embryo E17.5 | |name=whole body, embryo E17.5 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10513,LSID649,release008,COMPLETED | |profile_hcage=CNhs10513,LSID649,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.0446937034125132,0,0,0,0,0,0.345914173748315,0,0,0,0,0.635318924211553,0,0,0,0,0,0,-0.191893350882575,0,0,0,0.0766064454112358,0,0.0766064454112358,0,0,0,0,0,0,0,0.308804097076043,0,0,0,0.198305064902181,0.0657431673334649,0.0364594772431945,0.0864592980374361,0.262033004853749,0.678048065827105,0.275164445339063,0,0,0,0,0,0,0,0,0,0,0.0766064454112358,0,0.18236660653111,0.141704700595215,0,0,0,0,0,0.0766064454112358,0,0,0.0529716444806845,0.0960946639295665,-0.0622785032448363,0.175847616476514,0.0218016164856,0,0.193444040164534,0.0882033481136048,0,0.198305064902181,0,0.0636157139586853,0.0430544904615036,-0.00556364067308368,-0.0788315948399074,0,0,0,0,0,0,-0.0327098497339402,-0.214041398596072,-0.160647429228173,0,0,0.0766064454112358,0,0 | |||
|rna_box=9 | |rna_box=9 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 76: | ||
|rna_weight_ug= | |rna_weight_ug= | ||
|sample_age= | |sample_age= | ||
|sample_category=developmental | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 76: | Line 96: | ||
|sample_tissue=whole body | |sample_tissue=whole body | ||
|top_motifs=TBP:2.6850142093;NKX3-2:2.37811303976;HOX{A4,D4}:2.36068813716;NKX2-3_NKX2-5:2.04089288333;TLX2:1.9125918365;T:1.89297391386;ZNF148:1.79247478273;TFCP2:1.77535163857;TFAP4:1.74356531856;FOXL1:1.53756330703;ZNF238:1.50860345391;SMAD1..7,9:1.49987026851;MYOD1:1.45722980739;PAX1,9:1.4475552124;TBX4,5:1.44457629417;TAL1_TCF{3,4,12}:1.44112681751;MAZ:1.42718211063;TGIF1:1.41530869124;LEF1_TCF7_TCF7L1,2:1.38737691928;FOXA2:1.38608429473;GLI1..3:1.36998436728;EP300:1.36207484059;MYFfamily:1.35487343841;GTF2I:1.26364477379;FOSL2:1.26327795158;FOX{F1,F2,J1}:1.25620553355;EN1,2:1.21741988694;MEF2{A,B,C,D}:1.2155751139;FOS_FOS{B,L1}_JUN{B,D}:1.13592733587;GFI1:1.11095916258;MZF1:1.10995404591;VSX1,2:1.10605103645;TLX1..3_NFIC{dimer}:1.06794488151;SRF:1.04224635417;XCPE1{core}:1.03099766356;GATA6:1.0177631088;PATZ1:0.98894839485;PBX1:0.984819430629;TEAD1:0.980350132349;SP1:0.978892851237;SOX{8,9,10}:0.978687152584;GFI1B:0.970298572182;MAFB:0.959298424435;HMX1:0.956793664854;SNAI1..3:0.947303256636;TFAP2{A,C}:0.941306413622;EBF1:0.93915101267;NKX2-1,4:0.923441209423;ESR1:0.906699863218;NHLH1,2:0.899340281616;GCM1,2:0.885736199046;RREB1:0.858132083687;ADNP_IRX_SIX_ZHX:0.833565648055;MTF1:0.820600276349;FOX{D1,D2}:0.78016320146;NANOG:0.777465422361;ATF6:0.770559593889;NFE2L2:0.766288330025;SOX5:0.752080504062;HNF1A:0.75010612326;POU5F1:0.741598162313;CEBPA,B_DDIT3:0.740378339133;ZNF423:0.718503038254;HOXA9_MEIS1:0.715047339908;HMGA1,2:0.711822153046;TP53:0.698779860005;TOPORS:0.680909676045;DBP:0.667298369711;LMO2:0.666518004936;PAX6:0.664925260546;HSF1,2:0.662555915766;PRDM1:0.65129214323;KLF4:0.637963185875;HLF:0.627066920766;HOX{A5,B5}:0.624295870571;GTF2A1,2:0.621321911109;CUX2:0.606429362118;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.593744753066;HIC1:0.590984488617;HIF1A:0.546092114223;NFIX:0.54582649402;MTE{core}:0.500857397565;POU3F1..4:0.498836694549;NANOG{mouse}:0.473114494529;RXRA_VDR{dimer}:0.472376966676;POU6F1:0.465598148061;PRRX1,2:0.450935526355;NFATC1..3:0.448193933513;RBPJ:0.422950040181;EGR1..3:0.417758806707;MYBL2:0.407329504817;HNF4A_NR2F1,2:0.401070999458;IKZF1:0.358938649412;ATF2:0.358126034093;PAX2:0.351615411874;LHX3,4:0.326023627747;TFAP2B:0.319210724407;REST:0.31068353677;PAX5:0.304105817144;OCT4_SOX2{dimer}:0.282607174835;ZIC1..3:0.265136809059;MED-1{core}:0.2482325969;CRX:0.234358044809;NR5A1,2:0.212800242421;NFE2:0.208676365585;NR3C1:0.183479517535;ZBTB6:0.181952107495;CDC5L:0.17843678879;ALX1:0.168622165351;SOX2:0.167502354522;HES1:0.160097454574;GATA4:0.145619227697;ZFP161:0.1275879085;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.126370970424;GZF1:0.115673005405;STAT2,4,6:0.114628268515;ONECUT1,2:0.088977234119;IKZF2:0.0773840414383;ESRRA:0.0741397776927;ZNF384:0.0434722227975;HBP1_HMGB_SSRP1_UBTF:0.0417199004268;ZEB1:0.0374287407985;NFY{A,B,C}:0.029039270471;TFDP1:0.020528172937;RFX2..5_RFXANK_RFXAP:0.0201056889428;BREu{core}:0.00879290986179;NR1H4:-0.0423159962581;RFX1:-0.0482620595649;SPZ1:-0.0494209649773;POU2F1..3:-0.0632622962985;E2F1..5:-0.066528630355;BACH2:-0.100507260231;SOX17:-0.106780875378;FOXD3:-0.108392352686;PPARG:-0.108958842587;NKX3-1:-0.115249164652;DMAP1_NCOR{1,2}_SMARC:-0.120004676195;AHR_ARNT_ARNT2:-0.127735859425;FOXP3:-0.144299090205;FOXM1:-0.153033587977;RORA:-0.154243929092;FOXP1:-0.181996048593;PITX1..3:-0.21400065745;ZNF143:-0.241393937709;JUN:-0.248880145008;IRF7:-0.258849457933;HAND1,2:-0.275573521625;ALX4:-0.300475868102;NFIL3:-0.311321527905;CDX1,2,4:-0.312736101072;SPI1:-0.337161909565;SPIB:-0.344121076628;PAX4:-0.345212856024;AR:-0.362353832298;ETS1,2:-0.37020492736;NKX6-1,2:-0.387727079377;RUNX1..3:-0.39509254819;FOX{I1,J2}:-0.429232586644;NKX2-2,8:-0.46937050112;RXR{A,B,G}:-0.487090355836;NFKB1_REL_RELA:-0.50786999436;UFEwm:-0.510497707444;FOXN1:-0.531364177569;EVI1:-0.545723753035;PDX1:-0.547250780912;NRF1:-0.557141679838;NR6A1:-0.573925088548;STAT5{A,B}:-0.58128291293;MYB:-0.583879237319;bHLH_family:-0.587056108511;POU1F1:-0.601255808284;FOXQ1:-0.641751713859;YY1:-0.644974146427;NFE2L1:-0.654794184123;ATF5_CREB3:-0.660944167281;TEF:-0.723172495196;FOXO1,3,4:-0.728063218883;ARID5B:-0.742834194205;ATF4:-0.767628654357;ELF1,2,4:-0.774832604613;IRF1,2:-0.797203254906;SREBF1,2:-0.902893119351;CREB1:-0.908568198255;AIRE:-0.953418609683;PAX8:-1.01310150597;ELK1,4_GABP{A,B1}:-1.32600479299;STAT1,3:-1.36708256771;BPTF:-1.36737295946;ZBTB16:-1.51278459687 | |top_motifs=TBP:2.6850142093;NKX3-2:2.37811303976;HOX{A4,D4}:2.36068813716;NKX2-3_NKX2-5:2.04089288333;TLX2:1.9125918365;T:1.89297391386;ZNF148:1.79247478273;TFCP2:1.77535163857;TFAP4:1.74356531856;FOXL1:1.53756330703;ZNF238:1.50860345391;SMAD1..7,9:1.49987026851;MYOD1:1.45722980739;PAX1,9:1.4475552124;TBX4,5:1.44457629417;TAL1_TCF{3,4,12}:1.44112681751;MAZ:1.42718211063;TGIF1:1.41530869124;LEF1_TCF7_TCF7L1,2:1.38737691928;FOXA2:1.38608429473;GLI1..3:1.36998436728;EP300:1.36207484059;MYFfamily:1.35487343841;GTF2I:1.26364477379;FOSL2:1.26327795158;FOX{F1,F2,J1}:1.25620553355;EN1,2:1.21741988694;MEF2{A,B,C,D}:1.2155751139;FOS_FOS{B,L1}_JUN{B,D}:1.13592733587;GFI1:1.11095916258;MZF1:1.10995404591;VSX1,2:1.10605103645;TLX1..3_NFIC{dimer}:1.06794488151;SRF:1.04224635417;XCPE1{core}:1.03099766356;GATA6:1.0177631088;PATZ1:0.98894839485;PBX1:0.984819430629;TEAD1:0.980350132349;SP1:0.978892851237;SOX{8,9,10}:0.978687152584;GFI1B:0.970298572182;MAFB:0.959298424435;HMX1:0.956793664854;SNAI1..3:0.947303256636;TFAP2{A,C}:0.941306413622;EBF1:0.93915101267;NKX2-1,4:0.923441209423;ESR1:0.906699863218;NHLH1,2:0.899340281616;GCM1,2:0.885736199046;RREB1:0.858132083687;ADNP_IRX_SIX_ZHX:0.833565648055;MTF1:0.820600276349;FOX{D1,D2}:0.78016320146;NANOG:0.777465422361;ATF6:0.770559593889;NFE2L2:0.766288330025;SOX5:0.752080504062;HNF1A:0.75010612326;POU5F1:0.741598162313;CEBPA,B_DDIT3:0.740378339133;ZNF423:0.718503038254;HOXA9_MEIS1:0.715047339908;HMGA1,2:0.711822153046;TP53:0.698779860005;TOPORS:0.680909676045;DBP:0.667298369711;LMO2:0.666518004936;PAX6:0.664925260546;HSF1,2:0.662555915766;PRDM1:0.65129214323;KLF4:0.637963185875;HLF:0.627066920766;HOX{A5,B5}:0.624295870571;GTF2A1,2:0.621321911109;CUX2:0.606429362118;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.593744753066;HIC1:0.590984488617;HIF1A:0.546092114223;NFIX:0.54582649402;MTE{core}:0.500857397565;POU3F1..4:0.498836694549;NANOG{mouse}:0.473114494529;RXRA_VDR{dimer}:0.472376966676;POU6F1:0.465598148061;PRRX1,2:0.450935526355;NFATC1..3:0.448193933513;RBPJ:0.422950040181;EGR1..3:0.417758806707;MYBL2:0.407329504817;HNF4A_NR2F1,2:0.401070999458;IKZF1:0.358938649412;ATF2:0.358126034093;PAX2:0.351615411874;LHX3,4:0.326023627747;TFAP2B:0.319210724407;REST:0.31068353677;PAX5:0.304105817144;OCT4_SOX2{dimer}:0.282607174835;ZIC1..3:0.265136809059;MED-1{core}:0.2482325969;CRX:0.234358044809;NR5A1,2:0.212800242421;NFE2:0.208676365585;NR3C1:0.183479517535;ZBTB6:0.181952107495;CDC5L:0.17843678879;ALX1:0.168622165351;SOX2:0.167502354522;HES1:0.160097454574;GATA4:0.145619227697;ZFP161:0.1275879085;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.126370970424;GZF1:0.115673005405;STAT2,4,6:0.114628268515;ONECUT1,2:0.088977234119;IKZF2:0.0773840414383;ESRRA:0.0741397776927;ZNF384:0.0434722227975;HBP1_HMGB_SSRP1_UBTF:0.0417199004268;ZEB1:0.0374287407985;NFY{A,B,C}:0.029039270471;TFDP1:0.020528172937;RFX2..5_RFXANK_RFXAP:0.0201056889428;BREu{core}:0.00879290986179;NR1H4:-0.0423159962581;RFX1:-0.0482620595649;SPZ1:-0.0494209649773;POU2F1..3:-0.0632622962985;E2F1..5:-0.066528630355;BACH2:-0.100507260231;SOX17:-0.106780875378;FOXD3:-0.108392352686;PPARG:-0.108958842587;NKX3-1:-0.115249164652;DMAP1_NCOR{1,2}_SMARC:-0.120004676195;AHR_ARNT_ARNT2:-0.127735859425;FOXP3:-0.144299090205;FOXM1:-0.153033587977;RORA:-0.154243929092;FOXP1:-0.181996048593;PITX1..3:-0.21400065745;ZNF143:-0.241393937709;JUN:-0.248880145008;IRF7:-0.258849457933;HAND1,2:-0.275573521625;ALX4:-0.300475868102;NFIL3:-0.311321527905;CDX1,2,4:-0.312736101072;SPI1:-0.337161909565;SPIB:-0.344121076628;PAX4:-0.345212856024;AR:-0.362353832298;ETS1,2:-0.37020492736;NKX6-1,2:-0.387727079377;RUNX1..3:-0.39509254819;FOX{I1,J2}:-0.429232586644;NKX2-2,8:-0.46937050112;RXR{A,B,G}:-0.487090355836;NFKB1_REL_RELA:-0.50786999436;UFEwm:-0.510497707444;FOXN1:-0.531364177569;EVI1:-0.545723753035;PDX1:-0.547250780912;NRF1:-0.557141679838;NR6A1:-0.573925088548;STAT5{A,B}:-0.58128291293;MYB:-0.583879237319;bHLH_family:-0.587056108511;POU1F1:-0.601255808284;FOXQ1:-0.641751713859;YY1:-0.644974146427;NFE2L1:-0.654794184123;ATF5_CREB3:-0.660944167281;TEF:-0.723172495196;FOXO1,3,4:-0.728063218883;ARID5B:-0.742834194205;ATF4:-0.767628654357;ELF1,2,4:-0.774832604613;IRF1,2:-0.797203254906;SREBF1,2:-0.902893119351;CREB1:-0.908568198255;AIRE:-0.953418609683;PAX8:-1.01310150597;ELK1,4_GABP{A,B1}:-1.32600479299;STAT1,3:-1.36708256771;BPTF:-1.36737295946;ZBTB16:-1.51278459687 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:490-9F9;search_select_hide=table117:490-9F9 | |||
}} | }} |
Latest revision as of 19:17, 4 June 2020
Name: | whole body, embryo E17.5 |
---|---|
Species: | Mouse (Mus musculus) |
Library ID: | CNhs10513 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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|
Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10513
0 | 0 |
1 | 0.103 |
10 | 0 |
100 | 0.0766 |
1000 | 0.0737 |
1001 | 0.0651 |
1002 | -0.0468 |
1003 | 0.0602 |
1004 | 0 |
1005 | 0.0479 |
1006 | 0.187 |
1007 | 0.00857 |
1008 | 0 |
1009 | 0.0353 |
101 | -0.0221 |
1010 | 0 |
1011 | 0.1 |
1012 | 0.0438 |
1013 | -0.0355 |
1014 | 0.401 |
1015 | 0.0117 |
1016 | 0.169 |
1017 | 0 |
1018 | 0.371 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.247 |
1023 | 0 |
1024 | 0.16 |
1025 | 0.437 |
1026 | 0.145 |
1027 | 0.15 |
1028 | 0 |
1029 | -0.1 |
103 | 0.442 |
1030 | 0 |
1031 | 0.344 |
1032 | -0.022 |
1033 | 0 |
1034 | 0.198 |
1035 | 0.129 |
1036 | -0.0113 |
1037 | 0 |
1038 | 0.0613 |
1039 | 0.0638 |
104 | 0 |
1040 | 0.124 |
1041 | 0.198 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10513
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10513
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.508 |
10 | 10 | 0.0806 |
100 | 100 | 0.532 |
101 | 101 | 0.1 |
102 | 102 | 0.0485 |
103 | 103 | 0.0386 |
104 | 104 | 0.73 |
105 | 105 | 0.462 |
106 | 106 | 0.581 |
107 | 107 | 0.024 |
108 | 108 | 0.813 |
109 | 109 | 0.372 |
11 | 11 | 0.313 |
110 | 110 | 0.292 |
111 | 111 | 0.018 |
112 | 112 | 0.106 |
113 | 113 | 0.633 |
114 | 114 | 0.196 |
115 | 115 | 0.863 |
116 | 116 | 0.371 |
117 | 117 | 0.00415 |
118 | 118 | 0.144 |
119 | 119 | 0.694 |
12 | 12 | 0.358 |
120 | 120 | 0.384 |
121 | 121 | 0.291 |
122 | 122 | 0.248 |
123 | 123 | 0.401 |
124 | 124 | 0.646 |
125 | 125 | 0.099 |
126 | 126 | 0.124 |
127 | 127 | 0.78 |
128 | 128 | 0.532 |
129 | 129 | 0.804 |
13 | 13 | 0.0371 |
130 | 130 | 0.471 |
131 | 131 | 0.0527 |
132 | 132 | 0.943 |
133 | 133 | 0.0828 |
134 | 134 | 0.482 |
135 | 135 | 0.739 |
136 | 136 | 0.176 |
137 | 137 | 0.55 |
138 | 138 | 0.762 |
139 | 139 | 0.696 |
14 | 14 | 0.389 |
140 | 140 | 0.725 |
141 | 141 | 0.838 |
142 | 142 | 0.749 |
143 | 143 | 0.144 |
144 | 144 | 0.817 |
145 | 145 | 0.359 |
146 | 146 | 0.204 |
147 | 147 | 0.95 |
148 | 148 | 0.28 |
149 | 149 | 0.858 |
15 | 15 | 0.0267 |
150 | 150 | 0.88 |
151 | 151 | 0.776 |
152 | 152 | 0.534 |
153 | 153 | 0.298 |
154 | 154 | 0.415 |
155 | 155 | 0.0295 |
156 | 156 | 0.0797 |
157 | 157 | 0.134 |
158 | 158 | 0.00395 |
159 | 159 | 0.0657 |
160 | 160 | 0.126 |
161 | 161 | 0.118 |
162 | 162 | 0.274 |
163 | 163 | 0.817 |
164 | 164 | 0.0362 |
165 | 165 | 0.395 |
166 | 166 | 0.118 |
167 | 167 | 0.00395 |
168 | 168 | 0.00139 |
169 | 169 | 0.639 |
17 | 17 | 0.966 |
18 | 18 | 0.245 |
19 | 19 | 0.444 |
2 | 2 | 0.0189 |
20 | 20 | 0.00368 |
21 | 21 | 0.342 |
22 | 22 | 0.834 |
23 | 23 | 0.274 |
24 | 24 | 0.156 |
25 | 25 | 0.695 |
26 | 26 | 0.511 |
27 | 27 | 0.464 |
28 | 28 | 0.819 |
29 | 29 | 0.0228 |
3 | 3 | 0.411 |
30 | 30 | 0.072 |
31 | 31 | 0.683 |
32 | 32 | 0.754 |
33 | 33 | 0.19 |
34 | 34 | 0.349 |
35 | 35 | 0.151 |
36 | 36 | 0.0629 |
37 | 37 | 0.257 |
38 | 38 | 0.702 |
39 | 39 | 0.711 |
4 | 4 | 0.914 |
40 | 40 | 0.211 |
41 | 41 | 0.205 |
42 | 42 | 0.619 |
43 | 43 | 0.999 |
44 | 44 | 0.205 |
45 | 45 | 0.201 |
46 | 46 | 0.737 |
47 | 47 | 0.827 |
48 | 48 | 0.415 |
49 | 49 | 0.515 |
5 | 5 | 0.536 |
50 | 50 | 0.683 |
51 | 51 | 0.857 |
52 | 52 | 0.199 |
53 | 53 | 0.14 |
54 | 54 | 0.476 |
55 | 55 | 0.743 |
56 | 56 | 0.586 |
57 | 57 | 0.529 |
58 | 58 | 0.833 |
59 | 59 | 0.133 |
6 | 6 | 0.91 |
60 | 60 | 0.804 |
61 | 61 | 0.308 |
62 | 62 | 0.792 |
63 | 63 | 0.865 |
64 | 64 | 0.951 |
65 | 65 | 0.87 |
66 | 66 | 0.999 |
67 | 67 | 0.916 |
68 | 68 | 0.53 |
69 | 69 | 0.771 |
7 | 7 | 0.794 |
70 | 70 | 0.0118 |
71 | 71 | 0.393 |
72 | 72 | 0.504 |
73 | 73 | 0.142 |
74 | 74 | 0.788 |
75 | 75 | 0.0411 |
76 | 76 | 0.0016 |
77 | 77 | 0.336 |
78 | 78 | 0.683 |
79 | 79 | 0.836 |
8 | 8 | 0.407 |
80 | 80 | 0.901 |
81 | 81 | 0.587 |
82 | 82 | 0.833 |
83 | 83 | 0.558 |
84 | 84 | 0.705 |
85 | 85 | 0.921 |
86 | 86 | 0.963 |
87 | 87 | 0.58 |
88 | 88 | 0.363 |
89 | 89 | 0.419 |
9 | 9 | 0.489 |
90 | 90 | 0.0119 |
91 | 91 | 0.505 |
92 | 92 | 0.684 |
93 | 93 | 0.0316 |
94 | 94 | 0.968 |
95 | 95 | 0.0238 |
96 | 96 | 0.866 |
97 | 97 | 0.576 |
98 | 98 | 0.748 |
99 | 99 | 0.138 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10513
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000301 (mouse embryonic day 17.5 sample)
0011374 (mouse whole body- embryo E17.5 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
FF:0000294 (mouse embryonic day 11 sample)