FF:1520-43B5: Difference between revisions

Latest revision as of 19:08, 4 June 2020

Name:	forelimb, embryo E18
Species:	Mouse (Mus musculus)
Library ID:	CNhs11008
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	forelimb
dev stage	18 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005639

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11008		CAGE		DRX008969		DRR009843

Accession ID Mm9

Library id		BAM		CTSS
CNhs11008		DRZ001268		DRZ002651

Accession ID Mm10

Library id		BAM		CTSS
CNhs11008		DRZ012618		DRZ014001

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11008

0	0
1	0
10	0
100	0
1000	0.00325
1001	0.0182
1002	0
1003	0.284
1004	0
1005	0
1006	-0.0587
1007	0.0367
1008	0
1009	0.159
101	0.0493
1010	0
1011	0
1012	0
1013	-0.0775
1014	0.518
1015	0.0133
1016	0.219
1017	0
1018	0.633
1019	0
102	0
1020	0
1021	-0.0487
1022	0
1023	0
1024	0.174
1025	0
1026	0
1027	0.0603
1028	0
1029	0.0612
103	0.74
1030	0
1031	0.409
1032	-0.0883
1033	0
1034	0
1035	0
1036	0.0998
1037	0
1038	0.0858
1039	-0.14
104	0
1040	0.187
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11008

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0882
MA0003.1	MA0003.1	0.436
MA0004.1	MA0004.1	0.186
MA0006.1	MA0006.1	0.141
MA0007.1	MA0007.1	0.468
MA0009.1	MA0009.1	0.312
MA0014.1	MA0014.1	0.424
MA0017.1	MA0017.1	1.14219e-14
MA0018.2	MA0018.2	0.00371
MA0019.1	MA0019.1	0.25
MA0024.1	MA0024.1	0.498
MA0025.1	MA0025.1	0.135
MA0027.1	MA0027.1	0.637
MA0028.1	MA0028.1	1.05019e-5
MA0029.1	MA0029.1	0.827
MA0030.1	MA0030.1	0.386
MA0031.1	MA0031.1	0.237
MA0035.2	MA0035.2	6.54672e-7
MA0038.1	MA0038.1	0.641
MA0039.2	MA0039.2	0.0169
MA0040.1	MA0040.1	0.577
MA0041.1	MA0041.1	0.152
MA0042.1	MA0042.1	0.265
MA0043.1	MA0043.1	0.467
MA0046.1	MA0046.1	3.67804e-23
MA0047.2	MA0047.2	0.00999
MA0048.1	MA0048.1	0.956
MA0050.1	MA0050.1	0.0496
MA0051.1	MA0051.1	0.00126
MA0052.1	MA0052.1	4.24141e-4
MA0055.1	MA0055.1	0.0645
MA0057.1	MA0057.1	0.322
MA0058.1	MA0058.1	0.0555
MA0059.1	MA0059.1	0.0624
MA0060.1	MA0060.1	0.411
MA0061.1	MA0061.1	0.402
MA0062.2	MA0062.2	1.27987e-9
MA0065.2	MA0065.2	5.75691e-5
MA0066.1	MA0066.1	0.47
MA0067.1	MA0067.1	0.111
MA0068.1	MA0068.1	0.387
MA0069.1	MA0069.1	0.798
MA0070.1	MA0070.1	0.909
MA0071.1	MA0071.1	1.58942e-4
MA0072.1	MA0072.1	0.0736
MA0073.1	MA0073.1	0.761
MA0074.1	MA0074.1	0.0515
MA0076.1	MA0076.1	6.39201e-6
MA0077.1	MA0077.1	0.413
MA0078.1	MA0078.1	0.0342
MA0079.2	MA0079.2	0.00909
MA0080.2	MA0080.2	7.96946e-7
MA0081.1	MA0081.1	0.00866
MA0083.1	MA0083.1	0.293
MA0084.1	MA0084.1	0.812
MA0087.1	MA0087.1	0.412
MA0088.1	MA0088.1	0.968
MA0090.1	MA0090.1	0.0795
MA0091.1	MA0091.1	0.894
MA0092.1	MA0092.1	0.278
MA0093.1	MA0093.1	0.205
MA0099.2	MA0099.2	1.44464e-4
MA0100.1	MA0100.1	0.0466
MA0101.1	MA0101.1	0.123
MA0102.2	MA0102.2	0.687
MA0103.1	MA0103.1	0.0785
MA0104.2	MA0104.2	0.0828
MA0105.1	MA0105.1	0.809
MA0106.1	MA0106.1	0.0357
MA0107.1	MA0107.1	0.263
MA0108.2	MA0108.2	4.60232e-20
MA0111.1	MA0111.1	0.604
MA0112.2	MA0112.2	0.308
MA0113.1	MA0113.1	0.0359
MA0114.1	MA0114.1	1.25486e-12
MA0115.1	MA0115.1	4.21608e-7
MA0116.1	MA0116.1	0.746
MA0117.1	MA0117.1	0.184
MA0119.1	MA0119.1	0.716
MA0122.1	MA0122.1	0.605
MA0124.1	MA0124.1	0.332
MA0125.1	MA0125.1	0.0218
MA0131.1	MA0131.1	0.963
MA0135.1	MA0135.1	0.943
MA0136.1	MA0136.1	5.21012e-8
MA0137.2	MA0137.2	0.58
MA0138.2	MA0138.2	0.076
MA0139.1	MA0139.1	0.0993
MA0140.1	MA0140.1	1.30915e-4
MA0141.1	MA0141.1	3.74317e-10
MA0142.1	MA0142.1	0.26
MA0143.1	MA0143.1	0.218
MA0144.1	MA0144.1	0.538
MA0145.1	MA0145.1	0.0511
MA0146.1	MA0146.1	0.911
MA0147.1	MA0147.1	0.0659
MA0148.1	MA0148.1	0.0169
MA0149.1	MA0149.1	0.0286
MA0150.1	MA0150.1	0.0103
MA0152.1	MA0152.1	0.0101
MA0153.1	MA0153.1	1.41139e-15
MA0154.1	MA0154.1	0.835
MA0155.1	MA0155.1	0.795
MA0156.1	MA0156.1	5.08451e-5
MA0157.1	MA0157.1	0.272
MA0159.1	MA0159.1	1.63738e-4
MA0160.1	MA0160.1	4.75909e-9
MA0162.1	MA0162.1	0.923
MA0163.1	MA0163.1	0.648
MA0164.1	MA0164.1	0.323
MA0258.1	MA0258.1	0.00952
MA0259.1	MA0259.1	0.489

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11008

Novel motif	Logo	P-value
1	1	0.192
10	10	0.62
100	100	0.951
101	101	0.55
102	102	0.641
103	103	0.226
104	104	0.0656
105	105	0.591
106	106	0.444
107	107	0.143
108	108	0.734
109	109	0.279
11	11	0.126
110	110	0.714
111	111	0.0346
112	112	0.184
113	113	0.945
114	114	0.0654
115	115	0.587
116	116	0.867
117	117	0.0852
118	118	0.0359
119	119	0.379
12	12	0.485
120	120	0.554
121	121	0.0626
122	122	0.408
123	123	0.178
124	124	0.418
125	125	0.619
126	126	0.443
127	127	0.867
128	128	0.479
129	129	0.263
13	13	0.465
130	130	0.466
131	131	0.863
132	132	0.556
133	133	0.981
134	134	0.701
135	135	0.324
136	136	0.65
137	137	0.858
138	138	0.721
139	139	0.157
14	14	0.732
140	140	0.34
141	141	0.396
142	142	0.362
143	143	0.687
144	144	0.291
145	145	0.712
146	146	0.835
147	147	0.322
148	148	0.229
149	149	0.722
15	15	0.0168
150	150	0.906
151	151	0.282
152	152	0.0596
153	153	0.779
154	154	0.634
155	155	0.404
156	156	0.124
157	157	0.0176
158	158	0.144
159	159	0.257
160	160	0.0449
161	161	0.686
162	162	0.717
163	163	0.465
164	164	0.307
165	165	0.128
166	166	0.0442
167	167	0.0222
168	168	0.16
169	169	0.118
17	17	0.693
18	18	0.224
19	19	0.525
2	2	0.0994
20	20	0.176
21	21	0.426
22	22	0.444
23	23	0.126
24	24	0.915
25	25	0.274
26	26	0.0318
27	27	0.391
28	28	0.4
29	29	0.0482
3	3	0.205
30	30	0.0969
31	31	0.306
32	32	0.446
33	33	0.724
34	34	0.608
35	35	0.00174
36	36	0.0216
37	37	0.688
38	38	0.693
39	39	0.352
4	4	0.954
40	40	0.0627
41	41	0.0652
42	42	0.829
43	43	0.709
44	44	0.0466
45	45	0.391
46	46	0.727
47	47	0.312
48	48	0.127
49	49	0.0929
5	5	0.275
50	50	0.267
51	51	0.987
52	52	0.272
53	53	0.286
54	54	0.836
55	55	0.6
56	56	0.786
57	57	0.661
58	58	0.758
59	59	0.763
6	6	0.766
60	60	0.53
61	61	0.793
62	62	0.423
63	63	0.86
64	64	0.216
65	65	0.535
66	66	0.461
67	67	0.681
68	68	0.0195
69	69	0.682
7	7	0.835
70	70	0.137
71	71	0.867
72	72	0.562
73	73	0.722
74	74	0.836
75	75	0.29
76	76	0.0272
77	77	0.49
78	78	0.41
79	79	0.642
8	8	0.0785
80	80	0.0232
81	81	0.629
82	82	0.417
83	83	0.735
84	84	0.442
85	85	0.686
86	86	0.489
87	87	0.216
88	88	0.922
89	89	0.417
9	9	0.694
90	90	0.27
91	91	0.778
92	92	0.604
93	93	0.532
94	94	0.336
95	95	0.619
96	96	0.721
97	97	0.343
98	98	0.298
99	99	0.235

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11008

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011278 mouse forelimb- embryo E18 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002102 (forelimb)
0000479 (tissue)
0000026 (appendage)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0004708 (paired limb/fin)
0002101 (limb)
0004710 (pectoral appendage)
0010317 (germ layer / neural crest derived structure)
0010707 (appendage girdle complex)
0000153 (anterior region of body)
0010708 (pectoral complex)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000302 (mouse embryonic day 18 sample)
0011278 (mouse forelimb- embryo E18 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005417 (forelimb bud)
UBERON:0005733 (limb field)
UBERON:0005732 (limb/fin field)
UBERON:0005729 (forelimb/pectoral fin field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002102,UBERON:0000926,UBERON:0000479,UBERON:0000026,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0005291,UBERON:0003102,UBERON:0004708,UBERON:0002101,UBERON:0004710,UBERON:0001048,UBERON:0006598,UBERON:0004357,UBERON:0009872,UBERON:0004347,UBERON:0005419,UBERON:0005732,UBERON:0002532,UBERON:0000153,UBERON:0003081,UBERON:0006603,UBERON:0005417,UBERON:0005733,UBERON:0005729
+|DRA_sample_Accession=CAGE@SAMD00005639
+|accession_numbers=CAGE;DRX008969;DRR009843;DRZ001268;DRZ002651;DRZ012618;DRZ014001
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002102,UBERON:0000479,UBERON:0000026,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0004708,UBERON:0002101,UBERON:0004710,UBERON:0010317,UBERON:0010707,UBERON:0000153,UBERON:0010708
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000302,FF:0011278
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:121380640..121380655,-!p1@Zfp750!1.92!134.17!Zfp750;;chr16:25801993..25802014,+!p1@Trp63!1.77!57.62!Trp63;;chr4:135129538..135129558,-!p1@Grhl3!1.71!75.32!Grhl3;;chr12:34642510..34642530,+!p1@Twist1!1.67!141.58!Twist1;;chr9:31720843..31720888,-!p1@Barx2!1.66!49.18!Barx2;;chr13:40829137..40829205,-!p1@Tfap2a!1.63!47.12!Tfap2a;;chr11:121380594..121380609,-!p2@Zfp750!1.56!59.68!Zfp750;;chr6:52190467..52190500,-!p1@Hoxa10!1.56!35.60!Hoxa10;;chr11:94981424..94981439,+!p1@Dlx3!1.55!39.30!Dlx3;;chr3:99057269..99057306,+!p1@Tbx15!1.54!40.54!Tbx15;;chr19:5560600..5560617,-!p1@Ovol1!1.52!39.10!Ovol1;;chr5:77543897..77543911,-!p2@Hopx!1.51!59.06!Hopx;;chr1:165243591..165243625,-!p2@Prrx1!1.51!47.12!Prrx1;;chr11:121380611..121380625,-!p3@Zfp750!1.44!32.10!Zfp750;;chr12:37835141..37835194,+!p1@Meox2!1.37!68.11!Meox2;;chr9:43013917..43013968,-!p1@Pou2f3!1.35!21.40!Pou2f3;;chr13:72766250..72766273,+!p1@Irx2!1.29!28.40!Irx2;;chr2:172375081..172375105,+!p1@Tfap2c!1.29!18.31!Tfap2c;;chr12:37835120..37835133,+!p2@Meox2!1.27!25.31!Meox2;;chr15:102751603..102751630,+!p1@Hoxc13!1.24!16.46!Hoxc13;;chr7:6649134..6649167,-!p1@Zim1!1.23!85.81!Zim1;;chr9:87626083..87626108,-!p1@Tbx18!1.23!34.57!Tbx18;;chr6:52195795..52195825,-!p1@Hoxa11!1.22!15.43!Hoxa11;;chr12:75002389..75002406,+!p4@Hif1a!1.19!14.40!Hif1a;;chr19:5560570..5560582,-!p2@Ovol1!1.18!14.20!Ovol1;;chr13:40825465..40825469,-!p2@Tfap2a!1.17!13.79!Tfap2a;;chr5:77543935..77543947,-!p4@Hopx!1.16!13.58!Hopx;;chr10:12810631..12810649,+!p1@Plagl1!1.14!328.22!Plagl1;;chr2:9800207..9800234,-!p1@Gata3!1.14!38.89!Gata3;;chr15:35225845..35225867,+!p1@Osr2!1.13!31.28!Osr2;;chr1:93698030..93698064,+!p1@Twist2!1.13!25.11!Twist2;;chr1:140739014..140739032,-!p1@Lhx9!1.13!16.05!Lhx9;;chr12:25257265..25257294,+!p2@Grhl1!1.13!12.35!Grhl1;;chr18:80909801..80909819,-!p1@Nfatc1!1.12!71.20!Nfatc1;;chr8:59799772..59799789,+!p1@Hand2!1.11!33.95!Hand2;;chr1:165243379..165243402,-!p3@Prrx1!1.11!17.90!Prrx1;;chr1:165243792..165243808,-!p1@Prrx1!1.10!40.95!Prrx1;;chr10:126778916..126778974,-!p1@Gli1!1.10!26.34!Gli1;;chr12:25257141..25257173,+!p1@Grhl1!1.10!23.87!Grhl1;;chr10:44178521..44178557,-!p1@Prdm1!1.10!20.58!Prdm1;;chr6:6832076..6832092,-!p1@Dlx5!1.10!13.58!Dlx5;;chr4:55545337..55545357,-!p1@Klf4!1.09!165.45!Klf4;;chr9:69137716..69137744,+!p1@Rora!1.09!71.61!Rora;;chr18:7004715..7004731,-!p1@Mkx!1.08!26.55!Mkx;;chr5:120285144..120285160,+!p1@Tbx5!1.08!11.11!Tbx5;;chr6:52176164..52176195,-!p1@Hoxa9!1.06!13.17!Hoxa9;;chr17:44951431..44951445,-!p3@Runx2!1.06!10.49!Runx2;;chr15:102087737..102087801,-!p3@Rarg!1.05!17.08!Rarg;;chr12:37835248..37835260,+!p4@Meox2!1.05!10.29!Meox2;;chr6:70906450..70906454,+!p1@Foxi3!1.05!10.29!Foxi3;;chr14:99697871..99697934,+!p1@Klf5!1.04!200.02!Klf5;;chr12:109242266..109242295,-!p1@Bcl11b!1.04!84.58!Bcl11b;;chr13:53568104..53568156,-!p1@Msx2!1.04!14.82!Msx2;;chr11:96880072..96880079,+!p1@Sp6!1.04!10.08!Sp6;;chr13:72766279..72766296,+!p2@Irx2!1.03!14.40!Irx2;;chr17:44951553..44951586,-!p2@Runx2!1.03!10.91!Runx2;;chr1:19199236..19199258,+!p1@Tfap2b!1.02!9.47!Tfap2b;;chr11:78200071..78200100,-!p1@Foxn1!1.02!9.47!Foxn1;;chr13:99124189..99124205,+!p1@Foxd1!1.01!14.20!Foxd1;;chr12:37835203..37835218,+!p3@Meox2!1.01!11.11!Meox2;;chr15:102197405..102197454,-!p1@Sp7!1.01!9.26!Sp7;;chr2:160192793..160192809,-!p1@Mafb!1.00!138.90!Mafb;;chr8:87297280..87297326,-!p2@Nfix!0.99!20.99!Nfix;;chr1:136186574..136186592,+!p1@Myog!0.99!8.85!Myog;;chr3:99044284..99044308,+!p4@Tbx15!0.99!8.85!Tbx15;;chr13:83643159..83643226,+!p3@Mef2c!0.99!8.85!Mef2c;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.96!32.72!Ppp1r13l;;chr1:93698068..93698085,+!p2@Twist2!0.95!9.47!Twist2;;chr3:99057256..99057268,+!p3@Tbx15!0.95!7.82!Tbx15;;chr7:17647736..17647772,-!p1@Hif3a!0.94!28.19!Hif3a;;chr1:165243653..165243664,-!p4@Prrx1!0.94!11.11!Prrx1;;chr8:90328310..90328362,-!p3@Zfp423!0.94!9.05!Zfp423;;chr11:106128936..106128955,-!p4@Smarcd2!0.94!9.05!Smarcd2;;chr13:40826961..40827001,-!p4@Tfap2a!0.94!7.61!Tfap2a;;chr1:57029281..57029326,-!p1@Satb2!0.92!11.73!Satb2;;chr3:130813736..130813752,+!p3@Lef1!0.91!10.08!Lef1;;chr6:6831950..6831985,-!p2@Dlx5!0.91!8.03!Dlx5;;chr6:52184901..52184959,-!p2@Hoxa10!0.91!7.20!Hoxa10;;chr12:75002335..75002352,+!p7@Hif1a!0.91!7.20!Hif1a;;chr1:19199151..19199170,+!p3@Tfap2b!0.91!7.20!Tfap2b;;chr8:94881733..94881790,+!p1@Irx5!0.90!13.99!Irx5;;chr12:75002357..75002378,+!p6@Hif1a!0.90!7.00!Hif1a;;chr11:21901608..21901634,-!p1@Otx1!0.89!6.79!Otx1;;chr3:99057677..99057730,+!p2@Tbx15!0.89!6.79!Tbx15;;chr3:5218629..5218684,+!p1@Zfhx4!0.88!22.43!Zfhx4;;chr15:102087880..102087927,-!p2@Rarg!0.88!15.64!Rarg;;chr6:128250380..128250442,-!p2@Tead4!0.88!8.44!Tead4;;chr12:25257176..25257190,+!p3@Grhl1!0.88!7.61!Grhl1;;chr15:102828658..102828678,+!p1@Hoxc6!0.88!6.59!Hoxc6;;chr6:52195763..52195792,-!p2@Hoxa11!0.88!6.59!Hoxa11;;chr8:94325814..94325839,-!p2@Irx3!0.87!13.79!Irx3;;chr11:101755669..101755686,-!p1@Meox1!0.87!11.94!Meox1;;chr2:74517609..74517621,+!p3@Hoxd11!0.87!6.38!Hoxd11;;chr12:74147689..74147711,-!p1@Six1!0.86!14.40!Six1;;chr2:38206744..38206766,+!p1@Lhx2!0.86!7.61!Lhx2;;chr15:76287876..76287894,+!p1@Scx!0.85!34.98!Scx;;chr1:120950098..120950132,-!p2@Gli2!0.85!14.61!Gli2;;chr18:76219118..76219155,+!p1@Zbtb7c!0.84!10.91!Zbtb7c;;chr1:19199021..19199048,+!p8@Tfap2b!0.84!5.97!Tfap2b;;chr1:122498955..122498968,+!p1@En1!0.84!5.97!En1;;chr15:102196745..102196769,-!p2@Sp7!0.84!5.97!Sp7;;chr2:30700881..30700916,+!p1@Prrx2!0.83!11.32!Prrx2;;chr5:38215819..38215823,-!p1@Msx1!0.82!15.43!Msx1;;chr12:25257114..25257131,+!p4@Grhl1!0.82!7.41!Grhl1;;chr19:59533221..59533271,+!p1@Emx2!0.82!7.00!Emx2;;chr3:66785857..66785873,-!p1@Shox2!0.82!5.56!Shox2;;chr6:53523358..53523388,+!p1@Creb5!0.81!69.97!Creb5;;chr15:50720601..50720630,-!p2@Trps1!0.80!13.58!Trps1;;chr1:165243638..165243649,-!p5@Prrx1!0.80!6.59!Prrx1;;chr1:19199079..19199092,+!p7@Tfap2b!0.80!5.35!Tfap2b;;chr1:19199221..19199234,+!p6@Tfap2b!0.80!5.35!Tfap2b;;chr11:69468531..69468557,+!p1@Sox15!0.80!5.35!Sox15;;chr2:74513125..74513143,+!p1@Hoxd12!0.80!5.35!Hoxd12;;chr3:66785181..66785199,-!p2@Shox2!0.80!5.35!Shox2;;chr2:120365588..120365602,-!p2@Zfp106!0.79!9.05!Zfp106;;chr1:19202352..19202354,+!p2@Tfap2b!0.79!5.14!Tfap2b;;chr7:53631837..53631850,+!p1@Myod1!0.79!5.14!Myod1;;chr6:30908793..30908815,-!p1@Klf14!0.79!5.14!Klf14;;chr12:34642682..34642753,+!p2@Twist1!0.78!14.20!Twist1;;chr7:123182248..123182264,-!p3@Sox6!0.78!6.17!Sox6;;chr9:71743854..71743909,-!p1@Tcf12!0.77!42.80!Tcf12;;chr1:19199095..19199114,+!p5@Tfap2b!0.77!4.94!Tfap2b;;chr14:56443806..56443848,+!p1@Nfatc4!0.76!10.29!Nfatc4;;chr12:57796615..57796687,+!p1@Pax9!0.76!4.73!Pax9;;chr15:50714356..50714368,-!p14@Trps1!0.76!4.73!Trps1;;chr9:31720746..31720762,-!p4@Barx2!0.76!4.73!Barx2;;chr4:148178559..148178603,+!p1@Casz1!0.75!14.40!Casz1;;chr7:144506077..144506128,-!p1@Ebf3!0.75!11.52!Ebf3;;chr15:50721211..50721234,-!p6@Trps1!0.75!8.03!Trps1;;chr4:135129447..135129467,-!p2@Grhl3!0.75!5.76!Grhl3;;chr15:50721640..50721654,-!p7@Trps1!0.74!7.41!Trps1;;chr14:67853425..67853454,+!p1@Ebf2!0.74!6.59!Ebf2;;chr2:74517742..74517758,+!p2@Hoxd11!0.74!4.53!Hoxd11;;chr18:14131126..14131211,-!p1@Zfp521!0.73!103.10!Zfp521;;chr3:130813200..130813252,+!p1@Lef1!0.73!21.40!Lef1;;chr2:91864300..91864379,-!p2@Creb3l1!0.73!13.79!Creb3l1;;chr8:94325847..94325869,-!p3@Irx3!0.73!7.41!Irx3;;chr13:72101178..72101203,-!p1@Irx1!0.73!7.20!Irx1;;chr13:40826150..40826167,-!p3@Tfap2a!0.73!4.94!Tfap2a;;chr13:73397958..73397994,+!p1@Irx4!0.73!4.32!Irx4;;chr3:107398056..107398082,+!p1@Alx3!0.73!4.32!Alx3;;chr13:15555496..15555544,+!p1@Gli3!0.72!16.26!Gli3;;chr2:103143336..103143367,-!p1@Ehf!0.72!7.20!Ehf;;chr6:88143711..88143717,+!p2@Gata2!0.72!7.20!Gata2;;chr2:167363692..167363710,+!p1@Snai1!0.71!57.41!Snai1;;chr11:44430812..44430838,+!p1@Ebf1!0.71!45.48!Ebf1;;chr4:3865501..3865548,-!p1@Plag1!0.71!23.66!Plag1;;chr10:44178493..44178520,-!p3@Prdm1!0.71!5.97!Prdm1;;chr1:19199119..19199134,+!p4@Tfap2b!0.71!4.12!Tfap2b;;chr6:6831986..6832007,-!p4@Dlx5!0.71!4.12!Dlx5;;chr5:120285161..120285176,+!p2@Tbx5!0.71!4.12!Tbx5;;chr9:31720817..31720829,-!p5@Barx2!0.71!4.12!Barx2;;chr13:15555670..15555771,+!p2@Gli3!0.70!11.11!Gli3;;chr2:65683890..65683907,+!p1@Csrnp3!0.70!8.23!Csrnp3;;chr4:13712228..13712267,+!p3@Runx1t1!0.70!7.41!Runx1t1;;chr1:93698095..93698113,+!p3@Twist2!0.70!4.94!Twist2;;chr6:86619104..86619119,-!p1@Mxd1!0.69!36.22!Mxd1;;chr8:94325321..94325366,-!p1@Irx3!0.69!10.49!Irx3;;chr2:168427252..168427273,-!p2@Nfatc2!0.69!4.94!Nfatc2;;chr9:31720903..31720918,-!p2@Barx2!0.69!3.91!Barx2;;chr10:106923133..106923146,-!p1@Myf5!0.69!3.91!Myf5;;chr12:120085700..120085711,+!p1@Sp8!0.69!3.91!Sp8;;chr2:91864661..91864686,-!p1@Creb3l1!0.68!95.28!Creb3l1;;chr4:82151274..82151290,-!p3@Nfib!0.68!70.79!Nfib;;chr15:50721942..50721987,-!p13@Trps1!0.68!4.53!Trps1;;chr11:23980664..23980706,+!p2@Bcl11a!0.67!18.31!Bcl11a;;chr1:165243272..165243283,-!p6@Prrx1!0.67!4.53!Prrx1;;chr15:103170533..103170556,-!p1@Zfp385a!0.66!15.02!Zfp385a;;chr6:51382677..51382783,+!p1@Nfe2l3!0.66!10.08!Nfe2l3;;chr18:14130694..14130697,-!p2@Zfp521!0.66!9.05!Zfp521;;chr4:134708451..134708469,+!p1@Runx3!0.66!6.79!Runx3;;chr4:13712168..13712218,+!p4@Runx1t1!0.66!6.38!Runx1t1;;chr2:91864449..91864492,-!p3@Creb3l1!0.66!6.17!Creb3l1;;chr2:30700788..30700824,+!p2@Prrx2!0.66!5.76!Prrx2;;chr12:9581262..9581282,+!p1@Osr1!0.65!48.36!Osr1;;chr16:14705925..14705951,+!p1@Snai2!0.65!27.99!Snai2;;chr14:64562503..64562524,+!p1@Sox7!0.65!23.66!Sox7;;chr18:69505414..69505465,+!p6@Tcf4!0.65!14.40!Tcf4;;chrX:45245644..45245666,-!p2@Smarca1!0.65!12.55!Smarca1;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!0.65!6.59!Zfhx3;;chr14:67853632..67853674,+!p3@Ebf2!0.65!4.32!Ebf2;;chr6:6831928..6831949,-!p3@Dlx5!0.65!3.50!Dlx5;;chr1:19199064..19199075,+!p10@Tfap2b!0.65!3.50!Tfap2b;;chr1:57028125..57028149,-!p2@Satb2!0.65!3.50!Satb2;;chr8:87297878..87297935,-!p3@Nfix!0.64!8.23!Nfix;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!0.64!6.38!Zfhx3;;chr2:3070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id1a;;chr10:13685899..13685916,+!p1@Hivep2!0.28!17.29!Hivep2;;chr18:76401314..76401395,+!p2@Smad2!0.28!11.52!Smad2;;chr15:100382390..100382441,-!p1@Tfcp2!0.28!10.91!Tfcp2;;chr11:85646303..85646329,+!p1@Tbx2!0.28!10.70!Tbx2;;chr13:37918486..37918575,+!p2@Rreb1!0.28!10.08!Rreb1;;chr10:62328186..62328219,-!p1@Tet1!0.28!9.88!Tet1;;chr13:67370029..67370067,-!p1@Zfp458!0.28!6.79!Zfp458;;chr8:81923350..81923361,-!p3@Smad1!0.28!5.76!Smad1;;chr4:149862477..149862553,+!p3@Rere!0.28!5.35!Rere;;chr18:55150011..55150059,-!p3@Zfp608!0.28!4.94!Zfp608;;chr7:30875490..30875555,-!p1@Zfp566,p1@Zfp82!0.28!4.12!Zfp566;;chr18:80348151..80348181,-!p2@Adnp2!0.28!3.70!Adnp2;;chr10:26093876..26093894,-!p2@L3mbtl3!0.28!3.29!L3mbtl3;;chr12:72117645..72117677,+!p3@Arid4a!0.28!2.88!Arid4a;;chr5:24108047..24108106,-!p3@Smarcd3!0.28!2.26!Smarcd3;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.28!1.85!Mesp2;;chr7:20162663..20162678,+!p1@Zfp296!0.28!1.44!Zfp296;;chr6:14851250..14851277,+!p4@Foxp2!0.28!1.44!Foxp2;;chr13:83663546..83663560,+!p4@Mef2c!0.28!1.44!Mef2c;;chr13:59923965..59924003,-!p2@Zcchc6!0.28!1.23!Zcchc6;;chr11:23978353..23978379,+!p10@Bcl11a!0.28!1.23!Bcl11a;;chr16:42907676..42907797,+!p1@Zbtb20!0.27!21.40!Zbtb20;;chr8:107694661..107694713,+!p2@Cbfb!0.27!10.70!Cbfb;;chr14:65977498..65977528,+!p1@Zfp395!0.27!10.70!Zfp395;;chr8:118230866..118230891,-!p4@Maf!0.27!10.29!Maf;;chr2:84877605..84877687,+!p3@Ssrp1!0.27!9.47!Ssrp1;;chr1:193007123..193007139,-!p1@Atf3!0.27!8.85!Atf3;;chr1:39250584..39250643,+!p1@Npas2!0.27!7.82!Npas2;;chr9:32443818..32443854,+!p2@Ets1!0.27!6.79!Ets1;;chr4:6917606..6917681,-!p1@Tox!0.27!6.38!Tox;;chr13:67461490..67461531,-!p1@Zfp595,p1@Zfp953!0.27!6.17!Zfp953;;chr15:102034446..102034506,+!p2@Zfp740!0.27!5.14!Zfp740;;chr12:77471500..77471515,+!p2@Zbtb1!0.27!4.12!Zbtb1;;chrX:98449805..98449834,+!p3@Foxo4!0.27!3.91!Foxo4;;chr8:111227641..111227672,+!p@chr8:111227641..111227672,+!0.27!3.70!Zfhx3;;chr17:15701263..15701277,-!p2@Prdm9!0.27!3.29!Prdm9;;chr10:67000609..67000625,+!p1@Egr2!0.27!3.09!Egr2;;chr6:115311270..115311298,+!p1@Pparg!0.27!1.65!Pparg;;chr8:90483433..90483457,-!p2@Zfp423!0.27!1.44!Zfp423;;chr18:65741911..65741929,+!p3@Zfp532!0.27!1.44!Zfp532;;chr7:30094448..30094481,+!p4@Dpf1!0.27!1.23!Dpf1;;chr11:90251852..90251855,-!p4@Hlf!0.27!1.23!Hlf;;chr12:54349410..54349461,+!p1@Npas3!0.27!1.23!Npas3;;chr6:14851344..14851364,+!p6@Foxp2!0.27!1.23!Foxp2;;chr2:153067233..153067236,-!p4@Plagl2!0.27!1.23!Plagl2;;chr11:98798983..98799049,+!p1@Rara!0.26!41.16!Rara;;chr13:5860776..5860796,+!p1@Klf6!0.26!39.10!Klf6;;chr1:136456767..136456790,+!p2@Kdm5b!0.26!33.54!Kdm5b;;chr6:133985839..133985915,+!p1@Etv6!0.26!27.16!Etv6;;chr7:24993112..24993158,-!p1@Zfp111!0.26!16.67!Zfp111;;chr13:67601387..67601448,-!p2@Zfp58!0.26!12.96!Zfp58;;chr13:55431084..55431137,-!p1@Mxd3!0.26!12.14!Mxd3;;chr7:50835064..50835134,+!p1@Zfp719!0.26!12.14!Zfp719;;chr12:75008946..75008957,+!p2@Hif1a!0.26!7.61!Hif1a;;chr3:95021612..95021650,-!p2@Gabpb2!0.26!7.61!Gabpb2;;chr6:65728988..65729056,+!p1@Prdm5!0.26!7.41!Prdm5;;chr7:25039763..25039831,+!p1@Zfp108!0.26!7.20!Zfp108;;chrX:66613481..66613562,+!p1@Aff2!0.26!6.38!Aff2;;chr6:53018700..53018759,-!p2@Jazf1!0.26!5.35!Jazf1;;chr4:150482563..150482655,-!p2@Camta1!0.26!5.14!Camta1;;chr12:75009172..75009223,+!p3@Hif1a!0.26!3.29!Hif1a;;chr1:170361826..170361844,-!p9@Pbx1!0.26!2.88!Pbx1;;chr5:65213356..65213412,+!p6@Klf3!0.26!2.68!Klf3;;chr18:75979866..75979890,+!p3@Zbtb7c!0.26!2.68!Zbtb7c;;chr1:193961837..193961849,-!p3@Rcor3!0.26!2.47!Rcor3;;chr9:19426687..19426708,+!p3@Zfp317!0.26!2.26!Zfp317;;chr15:50721560..50721572,-!p10@Trps1!0.26!2.06!Trps1;;chr17:87153519..87153533,+!p5@Epas1!0.26!1.65!Epas1;;chr18:69753145..69753159,+!p14@Tcf4!0.26!1.44!Tcf4;;chr12:9581243..9581254,+!p4@Osr1!0.26!1.44!Osr1;;chr7:17200615..17200625,-!p9@Grlf1!0.26!1.44!Grlf1;;chr10:119914001..119914078,-!p4@Hmga2!0.26!1.44!Hmga2;;chr3:87329568..87329589,+!p2@Etv3!0.26!1.44!Etv3;;chr10:5636374..5636421,-!p1@Esr1!0.26!1.23!Esr1;;chr9:71743910..71743915,-!p7@Tcf12!0.26!1.03!Tcf12;;chrX:108009734..108009752,+!p2@Pou3f4!0.26!0.82!Pou3f4;;chr9:63514630..63514652,-!p8@Smad3!0.26!0.82!Smad3;;chr6:140571128..140571148,+!p10@Aebp2!0.26!0.82!Aebp2;;chr5:108155007..108155034,-!p1@Gfi1!0.26!0.82!Gfi1;;chr6:14851403..14851422,+!p8@Foxp2!0.26!0.82!Foxp2;;chr6:6812988..6813002,+!p3@Dlx6!0.26!0.82!Dlx6;;chr5:120285124..120285127,+!p8@Tbx5!0.26!0.82!Tbx5;;chr18:52775562..52775650,+!p1@Zfp474!0.26!0.82!Zfp474;;chr17:51972575..51972595,-!p13@Satb1!0.26!0.82!Satb1;;chr17:51971991..51972003,-!p4@Satb1!0.26!0.82!Satb1;;chr18:5591424..5591444,+!p5@Zeb1!0.26!0.82!Zeb1;;chr14:70477013..70477029,+!p4@Egr3!0.26!0.82!Egr3;;chr14:118636238..118636257,-!p2@Sox21!0.26!0.82!Sox21;;chr15:102797225..102797243,+!p2@Hoxc10!0.26!0.82!Hoxc10;;chr14:67853568..67853573,+!p5@Ebf2!0.26!0.82!Ebf2;;chr13:40826100..40826108,-!p10@Tfap2a!0.26!0.82!Tfap2a;;chr13:53568169..53568179,-!p4@Msx2!0.26!0.82!Msx2;;chr13:83643136..83643158,+!p7@Mef2c!0.26!0.82!Mef2c;;ch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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0005417,UBERON:0005733,UBERON:0005732,UBERON:0005729,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011278
 |is_obsolete=
+|library_id=CNhs11008
+|library_id_phase_based=2:CNhs11008
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1520
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1520
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E18.CNhs11008.1520-43B5.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E18.CNhs11008.1520-43B5.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E18.CNhs11008.1520-43B5.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E18.CNhs11008.1520-43B5.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E18.CNhs11008.1520-43B5.mm9.nobarcode.rdna.fa.gz
 |name=forelimb, embryo E18
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11008,LSID730,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.0126130492022444,0,0,0,0,0,0.443433991188229,0,0.0073701263727432,0,0,0.890497825284896,0,0,0,0,0,0,0.0169096977819929,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167605142220085,0,0,0,0,0.0314648731052895,0.114823097601392,0.023937026591656,0.134893777326875,0.956418235218093,-0.0610655893457838,0,0,0,0,0,0,0,0,0,0,0,0,0.0836951101187731,0.0812688455295622,0,0,0,0.106853702599339,0,0.0812688455295622,0,0.0812688455295622,0.051372876545949,0.115113963453066,0.111981377483076,0.355606347503682,0.0788920426090341,0,0.130794447912616,0.0567597470136658,0,0.0812688455295622,0,0.0291184894473208,-0.140289341452483,-0.0306377111008516,0.12997145382466,0,0,0,0,0.0406344227647811,0,-0.0635541649722193,0.0899387675304562,-0.0117700135621115,0.0107783693087487,0,0,0,0
 |rna_box=43
 |rna_catalog_number=
@@ Line 59: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 97: @@
 |top_motifs=TBP:2.52388349642;GLI1..3:2.48886372516;ZNF238:2.43960770346;FOS_FOS{B,L1}_JUN{B,D}:2.40561912705;ZNF148:2.39785996822;T:2.05303625499;TFCP2:2.01333835064;NKX2-3_NKX2-5:1.88287608213;EP300:1.79311665142;TBX4,5:1.77131308372;HOX{A4,D4}:1.76753926484;SOX5:1.71196046594;LEF1_TCF7_TCF7L1,2:1.69651960327;TAL1_TCF{3,4,12}:1.66653104866;FOSL2:1.66584986376;VSX1,2:1.66252055321;HMX1:1.60966430497;MYBL2:1.6018301081;ATF6:1.58043701582;NFATC1..3:1.57328353129;FOXP3:1.56790233949;TOPORS:1.52870301071;AIRE:1.50104377541;NKX2-1,4:1.49526014822;IKZF1:1.47128428362;EN1,2:1.38833912982;ALX1:1.38000109664;CDC5L:1.36041400044;GFI1B:1.3409990566;SPZ1:1.32200519168;TFAP4:1.31865602542;NKX3-2:1.31858125789;TEF:1.28207722076;XCPE1{core}:1.27345342909;HMGA1,2:1.24777606824;HOX{A5,B5}:1.24597720011;TEAD1:1.23717470232;FOXO1,3,4:1.19609770633;ZNF384:1.19380613818;TFAP2{A,C}:1.1843650893;FOXP1:1.16766232576;GCM1,2:1.15209296219;ATF2:1.14104284295;GTF2I:1.11349793188;IKZF2:1.11182236192;GFI1:1.07154563095;BACH2:1.05115725115;NANOG:1.00038098414;HLF:0.991893871546;PAX6:0.955821384575;NFE2:0.950830905236;SMAD1..7,9:0.934931263235;POU5F1:0.93255272373;MAZ:0.929230083501;NKX3-1:0.91785301217;SP1:0.908942408179;HIF1A:0.902223530433;NANOG{mouse}:0.879108823375;PITX1..3:0.875929959381;TP53:0.846299795021;TGIF1:0.845278019274;KLF4:0.795957037002;HOXA9_MEIS1:0.758735009394;HSF1,2:0.758218849235;CDX1,2,4:0.742002392887;MYOD1:0.704897757526;GTF2A1,2:0.691711827593;HES1:0.686721902337;MAFB:0.669498329624;RREB1:0.668937097184;MYFfamily:0.655661055238;PAX5:0.64074579876;TLX1..3_NFIC{dimer}:0.622224876021;DBP:0.610261193747;RBPJ:0.60988187552;PAX2:0.608048622162;FOXL1:0.60190451164;PATZ1:0.58809520892;ESR1:0.570158473919;NKX6-1,2:0.562692297279;PAX4:0.546348686424;GATA4:0.538671445364;MZF1:0.531994863473;MEF2{A,B,C,D}:0.494002724974;LHX3,4:0.492749328967;SOX{8,9,10}:0.432472274663;HBP1_HMGB_SSRP1_UBTF:0.43086800907;PRDM1:0.412463551382;CRX:0.409629416162;DMAP1_NCOR{1,2}_SMARC:0.402216005672;HIC1:0.400031276045;MTF1:0.391129430937;ZNF143:0.38028592856;SRF:0.34709820323;POU3F1..4:0.339436247711;FOX{I1,J2}:0.272514040695;RXRA_VDR{dimer}:0.251955554409;ALX4:0.238942850582;MTE{core}:0.235811964224;NKX2-2,8:0.226547131282;EBF1:0.209310882381;CEBPA,B_DDIT3:0.208034324516;SNAI1..3:0.204112628721;E2F1..5:0.170212514482;RUNX1..3:0.162706407338;MED-1{core}:0.158772294803;EGR1..3:0.112815783288;NFE2L2:0.105641332182;SPIB:0.0708847958085;PDX1:0.0677221016592;ADNP_IRX_SIX_ZHX:0.0614251197348;POU2F1..3:0.0252593708511;SOX2:0.0068793443586;ELF1,2,4:0.000429339317064;RORA:-0.00760787809476;GZF1:-0.0206560405216;SREBF1,2:-0.0210534093042;IRF7:-0.0432080009023;HAND1,2:-0.0500986277635;NFKB1_REL_RELA:-0.0687293552588;PRRX1,2:-0.0829574737899;NHLH1,2:-0.0836737305307;STAT5{A,B}:-0.0943984347857;RFX2..5_RFXANK_RFXAP:-0.0978267700891;ZEB1:-0.100123885478;ETS1,2:-0.136182500909;ATF4:-0.136620894345;TLX2:-0.139353595893;SPI1:-0.148406787923;TFAP2B:-0.161874236691;SOX17:-0.166645999179;FOXN1:-0.17528098738;CUX2:-0.176610671695;FOXA2:-0.195838858297;NFIX:-0.211200635298;NR3C1:-0.245879980617;STAT2,4,6:-0.251788039339;REST:-0.26258201718;BREu{core}:-0.266847842349;TFDP1:-0.267414775891;FOX{D1,D2}:-0.277565858254;POU1F1:-0.278013630946;IRF1,2:-0.295062412287;PAX8:-0.306986343558;POU6F1:-0.32865183206;NRF1:-0.340732185449;EVI1:-0.377378289491;ZFP161:-0.403959457854;FOXD3:-0.418611243613;ZIC1..3:-0.425840481909;ZBTB16:-0.428062415442;UFEwm:-0.433893549339;BPTF:-0.453719458732;ZBTB6:-0.463151494593;NR6A1:-0.465698265454;AR:-0.486840915545;STAT1,3:-0.511547921583;RFX1:-0.530589209307;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.532233586105;FOXM1:-0.539977345392;FOX{F1,F2,J1}:-0.540235506154;MYB:-0.543286642932;LMO2:-0.550664101576;ELK1,4_GABP{A,B1}:-0.551320680365;bHLH_family:-0.559504983455;CREB1:-0.563950405347;AHR_ARNT_ARNT2:-0.658343723661;ZNF423:-0.666575632381;HNF4A_NR2F1,2:-0.669258748956;NFY{A,B,C}:-0.677893794894;NFE2L1:-0.727302058648;PPARG:-0.739755360208;JUN:-0.746343975738;ATF5_CREB3:-0.756158353747;HNF1A:-0.762213966905;OCT4_SOX2{dimer}:-0.784052160388;RXR{A,B,G}:-0.817210346352;NR1H4:-0.824278664311;PAX1,9:-0.927869433717;ONECUT1,2:-0.969983716461;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.973014091989;GATA6:-1.00819852057;FOXQ1:-1.02217340333;YY1:-1.05477507728;ESRRA:-1.12003298535;NFIL3:-1.21614876897;ARID5B:-1.44570430579;PBX1:-1.78793620492;NR5A1,2:-1.82066194321
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1520-43B5;search_select_hide=table117:1520-43B5
 }}

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FF:1520-43B5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:08, 4 June 2020

CNhs11008

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0