FF:331-24E9: Difference between revisions

Latest revision as of 19:10, 4 June 2020

Name:	heart, embryo E11
Species:	Mouse (Mus musculus)
Library ID:	CNhs10586
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	heart
dev stage	11 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005670

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10586		CAGE		DRX008971		DRR009845

Accession ID Mm9

Library id		BAM		CTSS
CNhs10586		DRZ001270		DRZ002653

Accession ID Mm10

Library id		BAM		CTSS
CNhs10586		DRZ012620		DRZ014003

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10586

0	0
1	0
10	0.0818
100	0
1000	-0.0355
1001	0.111
1002	0.299
1003	-0.104
1004	0
1005	-0.0765
1006	0.148
1007	-0.00469
1008	0
1009	0.00991
101	0.0599
1010	0
1011	0
1012	0
1013	-0.217
1014	0.266
1015	0.213
1016	0.194
1017	0
1018	0
1019	0
102	0
1020	0
1021	0.0219
1022	0.0818
1023	0
1024	-0.0578
1025	0
1026	0
1027	0
1028	0
1029	-0.0323
103	-0.0376
1030	0
1031	0.369
1032	-0.0808
1033	-0.0752
1034	0
1035	0.262
1036	-0.0341
1037	0
1038	-0.0594
1039	0.00245
104	0
1040	0.171
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10586

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0163
MA0003.1	MA0003.1	0.74
MA0004.1	MA0004.1	0.919
MA0006.1	MA0006.1	0.992
MA0007.1	MA0007.1	0.237
MA0009.1	MA0009.1	0.74
MA0014.1	MA0014.1	0.723
MA0017.1	MA0017.1	0.00773
MA0018.2	MA0018.2	0.351
MA0019.1	MA0019.1	0.838
MA0024.1	MA0024.1	4.52952e-7
MA0025.1	MA0025.1	0.91
MA0027.1	MA0027.1	0.0636
MA0028.1	MA0028.1	0.168
MA0029.1	MA0029.1	0.349
MA0030.1	MA0030.1	0.386
MA0031.1	MA0031.1	0.0705
MA0035.2	MA0035.2	0.0105
MA0038.1	MA0038.1	0.623
MA0039.2	MA0039.2	0.146
MA0040.1	MA0040.1	0.0831
MA0041.1	MA0041.1	0.62
MA0042.1	MA0042.1	0.58
MA0043.1	MA0043.1	0.362
MA0046.1	MA0046.1	4.94381e-12
MA0047.2	MA0047.2	0.0915
MA0048.1	MA0048.1	0.0979
MA0050.1	MA0050.1	1.28295e-8
MA0051.1	MA0051.1	0.00151
MA0052.1	MA0052.1	4.1134e-23
MA0055.1	MA0055.1	0.00658
MA0057.1	MA0057.1	0.597
MA0058.1	MA0058.1	0.689
MA0059.1	MA0059.1	0.924
MA0060.1	MA0060.1	4.65451e-6
MA0061.1	MA0061.1	0.0974
MA0062.2	MA0062.2	0.766
MA0065.2	MA0065.2	0.0367
MA0066.1	MA0066.1	0.521
MA0067.1	MA0067.1	0.844
MA0068.1	MA0068.1	0.177
MA0069.1	MA0069.1	0.4
MA0070.1	MA0070.1	0.615
MA0071.1	MA0071.1	0.797
MA0072.1	MA0072.1	0.251
MA0073.1	MA0073.1	0.755
MA0074.1	MA0074.1	0.433
MA0076.1	MA0076.1	0.607
MA0077.1	MA0077.1	0.493
MA0078.1	MA0078.1	0.201
MA0079.2	MA0079.2	0.128
MA0080.2	MA0080.2	0.0194
MA0081.1	MA0081.1	0.874
MA0083.1	MA0083.1	1.64828e-18
MA0084.1	MA0084.1	0.821
MA0087.1	MA0087.1	0.945
MA0088.1	MA0088.1	0.265
MA0090.1	MA0090.1	0.00882
MA0091.1	MA0091.1	0.504
MA0092.1	MA0092.1	0.387
MA0093.1	MA0093.1	0.872
MA0099.2	MA0099.2	7.64459e-6
MA0100.1	MA0100.1	0.505
MA0101.1	MA0101.1	0.468
MA0102.2	MA0102.2	0.0219
MA0103.1	MA0103.1	7.07196e-7
MA0104.2	MA0104.2	0.679
MA0105.1	MA0105.1	0.0731
MA0106.1	MA0106.1	0.261
MA0107.1	MA0107.1	0.322
MA0108.2	MA0108.2	0.148
MA0111.1	MA0111.1	0.234
MA0112.2	MA0112.2	0.233
MA0113.1	MA0113.1	0.433
MA0114.1	MA0114.1	3.60077e-4
MA0115.1	MA0115.1	0.551
MA0116.1	MA0116.1	0.00612
MA0117.1	MA0117.1	0.332
MA0119.1	MA0119.1	0.808
MA0122.1	MA0122.1	0.534
MA0124.1	MA0124.1	0.29
MA0125.1	MA0125.1	0.179
MA0131.1	MA0131.1	0.689
MA0135.1	MA0135.1	0.239
MA0136.1	MA0136.1	0.0572
MA0137.2	MA0137.2	0.32
MA0138.2	MA0138.2	0.0349
MA0139.1	MA0139.1	0.063
MA0140.1	MA0140.1	1.23982e-4
MA0141.1	MA0141.1	0.198
MA0142.1	MA0142.1	0.312
MA0143.1	MA0143.1	0.36
MA0144.1	MA0144.1	0.614
MA0145.1	MA0145.1	0.108
MA0146.1	MA0146.1	0.87
MA0147.1	MA0147.1	0.977
MA0148.1	MA0148.1	0.0716
MA0149.1	MA0149.1	0.0809
MA0150.1	MA0150.1	0.0067
MA0152.1	MA0152.1	0.632
MA0153.1	MA0153.1	4.53726e-8
MA0154.1	MA0154.1	0.0315
MA0155.1	MA0155.1	0.418
MA0156.1	MA0156.1	0.0217
MA0157.1	MA0157.1	0.0683
MA0159.1	MA0159.1	0.748
MA0160.1	MA0160.1	0.327
MA0162.1	MA0162.1	0.574
MA0163.1	MA0163.1	0.973
MA0164.1	MA0164.1	0.665
MA0258.1	MA0258.1	0.16
MA0259.1	MA0259.1	0.61

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10586

Novel motif	Logo	P-value
1	1	0.258
10	10	0.299
100	100	0.773
101	101	0.83
102	102	0.643
103	103	0.012
104	104	0.49
105	105	0.645
106	106	0.174
107	107	0.368
108	108	0.949
109	109	0.712
11	11	0.14
110	110	0.886
111	111	0.95
112	112	0.173
113	113	0.863
114	114	0.207
115	115	0.482
116	116	0.163
117	117	0.456
118	118	0.816
119	119	0.103
12	12	0.463
120	120	0.172
121	121	0.767
122	122	0.578
123	123	0.0419
124	124	0.431
125	125	0.446
126	126	0.972
127	127	0.17
128	128	0.0327
129	129	0.205
13	13	0.077
130	130	0.393
131	131	0.406
132	132	0.577
133	133	0.596
134	134	0.683
135	135	0.833
136	136	0.458
137	137	0.579
138	138	0.147
139	139	0.58
14	14	0.617
140	140	0.338
141	141	0.142
142	142	0.93
143	143	0.237
144	144	0.225
145	145	0.547
146	146	0.426
147	147	0.75
148	148	0.226
149	149	0.856
15	15	0.178
150	150	0.836
151	151	0.0943
152	152	0.609
153	153	0.282
154	154	0.495
155	155	0.708
156	156	0.165
157	157	0.405
158	158	0.391
159	159	0.623
160	160	0.952
161	161	0.874
162	162	0.997
163	163	0.887
164	164	0.892
165	165	0.307
166	166	0.657
167	167	0.552
168	168	0.706
169	169	0.818
17	17	0.0882
18	18	0.149
19	19	0.87
2	2	0.583
20	20	0.146
21	21	0.556
22	22	0.879
23	23	0.0654
24	24	0.496
25	25	0.372
26	26	0.222
27	27	0.187
28	28	0.344
29	29	0.925
3	3	0.218
30	30	0.34
31	31	0.423
32	32	0.107
33	33	0.242
34	34	0.398
35	35	0.0692
36	36	0.0932
37	37	0.797
38	38	0.313
39	39	0.289
4	4	0.622
40	40	0.0108
41	41	0.751
42	42	0.349
43	43	0.191
44	44	0.831
45	45	0.406
46	46	0.476
47	47	0.294
48	48	0.284
49	49	0.157
5	5	0.676
50	50	0.681
51	51	0.61
52	52	0.849
53	53	0.49
54	54	0.529
55	55	0.46
56	56	0.613
57	57	0.829
58	58	0.422
59	59	0.668
6	6	0.105
60	60	0.599
61	61	0.654
62	62	0.192
63	63	0.364
64	64	0.377
65	65	0.148
66	66	0.604
67	67	0.714
68	68	0.247
69	69	0.405
7	7	0.913
70	70	0.00565
71	71	0.947
72	72	0.138
73	73	0.869
74	74	0.34
75	75	0.223
76	76	0.5
77	77	0.129
78	78	0.801
79	79	0.0299
8	8	0.506
80	80	0.0461
81	81	0.285
82	82	0.265
83	83	0.44
84	84	0.456
85	85	0.233
86	86	0.886
87	87	0.105
88	88	0.286
89	89	0.286
9	9	0.934
90	90	0.203
91	91	0.535
92	92	0.118
93	93	0.333
94	94	0.801
95	95	0.701
96	96	0.731
97	97	0.154
98	98	0.182
99	99	0.28

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10586

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011313 mouse heart- embryo E11 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000294 (mouse embryonic day 11 sample)
0011313 (mouse heart- embryo E11 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0000948,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0003103,UBERON:0005291,UBERON:0001048,UBERON:0006598,UBERON:0002532,UBERON:0004535,UBERON:0005498,UBERON:0003081,UBERON:0001009,UBERON:0004140,UBERON:0009881,UBERON:0006603,UBERON:0004141,UBERON:0004872,UBERON:0003084,UBERON:0007005,UBERON:0004139,UBERON:0004291
+|DRA_sample_Accession=CAGE@SAMD00005670
+|accession_numbers=CAGE;DRX008971;DRR009845;DRZ001270;DRZ002653;DRZ012620;DRZ014003
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0000948,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000294,FF:0011313
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr9:24578720..24578735,-!p1@Tbx20!2.47!294.74!Tbx20;;chr17:26978409..26978442,-!p1@Nkx2-5!2.10!125.93!Nkx2-5;;chr8:59799772..59799789,+!p1@Hand2!1.85!194.49!Hand2;;chr14:63864056..63864102,-!p1@Gata4!1.83!112.47!Gata4;;chr2:180069370..180069409,-!p1@Gata5!1.71!58.82!Gata5;;chr11:57645506..57645523,-!p1@Hand1!1.66!44.53!Hand1;;chr12:34642510..34642530,+!p1@Twist1!1.54!104.60!Twist1;;chr5:77543897..77543911,-!p2@Hopx!1.45!50.75!Hopx;;chr17:26978521..26978536,-!p2@Nkx2-5!1.41!24.86!Nkx2-5;;chr6:97879817..97879857,+!p2@Mitf!1.40!24.03!Mitf;;chr1:189821714..189821761,+!p1@Esrrg!1.35!38.94!Esrrg;;chr10:22539932..22539956,-!p1@Tcf21!1.30!50.33!Tcf21;;chr10:119913278..119913298,-!p2@Hmga2!1.30!42.05!Hmga2;;chr7:119885539..119885574,+!p3@Tead1!1.29!18.43!Tead1;;chr12:3891810..3891829,+!p2@Dnmt3a!1.23!24.86!Dnmt3a;;chr10:12810631..12810649,+!p1@Plagl1!1.21!392.09!Plagl1;;chr14:63890491..63890516,-!p2@Gata4!1.20!14.91!Gata4;;chr4:87452180..87452196,-!p3@Mllt3!1.17!27.34!Mllt3;;chr11:101755669..101755686,-!p1@Meox1!1.17!25.06!Meox1;;chr10:119913310..119913366,-!p1@Hmga2!1.16!103.56!Hmga2;;chr8:87425854..87425891,+!p1@Klf1!1.16!13.46!Klf1;;chr9:87625971..87625992,-!p2@Tbx18!1.15!13.26!Tbx18;;chr10:119913546..119913583,-!p3@Hmga2!1.12!25.27!Hmga2;;chr5:120285144..120285160,+!p1@Tbx5!1.08!10.98!Tbx5;;chr7:6649134..6649167,-!p1@Zim1!1.07!58.62!Zim1;;chr5:77544170..77544181,-!p6@Hopx!1.07!10.77!Hopx;;chr18:11052642..11052659,+!p1@Gata6!1.06!53.65!Gata6;;chr14:63864337..63864381,-!p6@Gata4!1.06!10.56!Gata4;;chr14:63890660..63890687,-!p7@Gata4!1.06!10.56!Gata4;;chr17:26978449..26978458,-!p3@Nkx2-5!1.06!10.36!Nkx2-5;;chr3:66785857..66785873,-!p1@Shox2!1.06!10.36!Shox2;;chr2:30700788..30700824,+!p2@Prrx2!1.05!15.74!Prrx2;;chr14:63890459..63890484,-!p4@Gata4!1.04!9.94!Gata4;;chr5:24107779..24107825,-!p1@Smarcd3!1.02!64.62!Smarcd3;;chr10:30562571..30562597,-!p1@Hey2!1.02!22.78!Hey2;;chr2:104966766..104966786,+!p1@Wt1!1.02!15.12!Wt1;;chrX:58146612..58146615,-!p1@Sox3!1.02!9.53!Sox3;;chr7:19895354..19895369,-!p1@Fosb!1.00!12.43!Fosb;;chr4:87452200..87452229,-!p2@Mllt3!0.98!18.43!Mllt3;;chr3:128917187..128917223,+!p2@Pitx2!0.96!9.53!Pitx2;;chr14:63890519..63890539,-!p3@Gata4!0.95!7.87!Gata4;;chr7:17647736..17647772,-!p1@Hif3a!0.93!27.55!Hif3a;;chr18:80909801..80909819,-!p1@Nfatc1!0.92!45.15!Nfatc1;;chr18:11052485..11052508,+!p2@Gata6!0.92!21.13!Gata6;;chr4:114732112..114732158,+!p1@Tal1!0.92!16.36!Tal1;;chr2:28477452..28477483,-!p1@Gfi1b!0.92!9.11!Gfi1b;;chr9:87626083..87626108,-!p1@Tbx18!0.91!16.36!Tbx18;;chr19:10315179..10315241,-!p1@Gm98!0.87!70.42!Gm98;;chr18:11052456..11052477,+!p3@Gata6!0.87!20.71!Gata6;;chr7:19895384..19895399,-!p2@Fosb!0.86!9.11!Fosb;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.85!25.06!Ppp1r13l;;chr12:3891753..3891801,+!p4@Dnmt3a!0.85!10.15!Dnmt3a;;chr15:103085660..103085681,-!p1@Nfe2!0.85!9.32!Nfe2;;chr14:63890691..63890718,-!p8@Gata4!0.85!6.01!Gata4;;chr8:123640063..123640077,+!p1@Foxc2!0.83!10.98!Foxc2;;chr13:53568104..53568156,-!p1@Msx2!0.82!8.49!Msx2;;chr14:63890545..63890560,-!p5@Gata4!0.82!5.59!Gata4;;chr2:104966874..104966907,+!p2@Wt1!0.82!5.59!Wt1;;chr17:26978464..26978469,-!p4@Nkx2-5!0.81!5.39!Nkx2-5;;chr4:150482563..150482655,-!p2@Camta1!0.80!20.51!Camta1;;chr10:30562617..30562637,-!p2@Hey2!0.80!6.84!Hey2;;chr10:119914001..119914078,-!p4@Hmga2!0.79!7.25!Hmga2;;chr4:148178559..148178603,+!p1@Casz1!0.77!15.12!Casz1;;chr2:180069423..180069434,-!p2@Gata5!0.76!4.76!Gata5;;chr12:86814833..86814846,+!p1@Fos!0.74!115.58!Fos;;chr12:84828663..84828679,-!p1@Dpf3!0.74!38.73!Dpf3;;chr9:87625998..87626007,-!p4@Tbx18!0.74!4.56!Tbx18;;chr18:11052606..11052633,+!p4@Gata6!0.73!12.01!Gata6;;chr13:72766250..72766273,+!p1@Irx2!0.73!7.04!Irx2;;chr2:104966933..104966966,+!p3@Wt1!0.73!4.35!Wt1;;chr7:119822957..119822980,+!p2@Tead1!0.72!22.78!Tead1;;chr9:63869751..63869767,-!p1@Smad6!0.72!12.22!Smad6;;chr8:94325321..94325366,-!p1@Irx3!0.72!11.18!Irx3;;chrX:137135036..137135064,-!p4@Tsc22d3!0.72!8.91!Tsc22d3;;chr8:94881733..94881790,+!p1@Irx5!0.72!8.91!Irx5;;chr10:119913792..119913820,-!p5@Hmga2!0.72!7.66!Hmga2;;chr2:152223586..152223604,-!p5@Sox12!0.72!6.42!Sox12;;chr15:40486883..40486903,+!p4@Zfpm2!0.72!6.01!Zfpm2;;chr9:63869834..63869849,-!p5@Smad6!0.71!7.46!Smad6;;chr13:72766279..72766296,+!p2@Irx2!0.71!6.42!Irx2;;chr15:40486566..40486600,+!p1@Zfpm2!0.70!26.93!Zfpm2;;chr8:87225670..87225697,+!p2@Lyl1!0.70!13.05!Lyl1;;chr2:30700881..30700916,+!p1@Prrx2!0.70!8.08!Prrx2;;chr11:11584970..11585030,+!p2@Ikzf1!0.70!6.01!Ikzf1;;chr2:152223441..152223465,-!p2@Sox12!0.69!18.23!Sox12;;chr5:120285161..120285176,+!p2@Tbx5!0.69!3.94!Tbx5;;chr14:64562503..64562524,+!p1@Sox7!0.68!25.27!Sox7;;chr9:63869802..63869815,-!p3@Smad6!0.68!8.08!Smad6;;chr2:120365588..120365602,-!p2@Zfp106!0.68!6.84!Zfp106;;chr2:30700857..30700873,+!p3@Prrx2!0.67!5.39!Prrx2;;chr17:48061584..48061601,-!p2@Foxp4!0.66!26.72!Foxp4;;chrX:45245644..45245666,-!p2@Smarca1!0.66!13.05!Smarca1;;chr4:148178529..148178548,+!p3@Casz1!0.66!9.32!Casz1;;chr4:13670499..13670526,+!p2@Runx1t1!0.66!8.70!Runx1t1;;chr1:140739014..140739032,-!p1@Lhx9!0.66!4.76!Lhx9;;chr5:77543935..77543947,-!p4@Hopx!0.66!3.52!Hopx;;chr7:52471143..52471186,+!p1@Tead2!0.65!42.88!Tead2;;chr1:193007123..193007139,-!p1@Atf3!0.65!22.37!Atf3;;chrX:45245679..45245702,-!p1@Smarca1!0.64!17.19!Smarca1;;chr18:14131045..14131062,-!p3@Zfp521!0.64!5.80!Zfp521;;chr1:191994550..191994623,-!p1@Prox1!0.63!26.72!Prox1;;chr12:28027561..28027591,-!p1@Sox11!0.63!25.48!Sox11;;chr14:17407970..17408015,-!p2@Rarb!0.63!9.94!Rarb;;chr5:120285130..120285141,+!p3@Tbx5!0.63!3.31!Tbx5;;chr3:29911808..29911833,-!p8@Mecom!0.63!3.31!Mecom;;chrX:7544943..7545001,-!p1@Gata1!0.63!3.31!Gata1;;chr12:12948633..12948651,-!p1@Mycn!0.62!36.04!Mycn;;chr18:65741358..65741415,+!p1@Zfp532!0.62!16.16!Zfp532;;chr2:133377954..133377973,+!p1@Bmp2!0.62!11.60!Bmp2;;chr1:170362437..170362478,-!p5@Pbx1!0.62!11.18!Pbx1;;chr7:89137163..89137200,-!p1@Bnc1!0.62!3.94!Bnc1;;chr5:138187341..138187406,+!p3@Tsc22d4!0.61!39.35!Tsc22d4;;chr13:78339382..78339420,-!p3@Nr2f1!0.61!3.73!Nr2f1;;chr2:30700830..30700843,+!p4@Prrx2!0.61!3.11!Prrx2;;chr2:105003277..105003280,+!p5@Wt1!0.61!3.11!Wt1;;chr5:77544108..77544119,-!p7@Hopx!0.61!3.11!Hopx;;chr1:92895299..92895373,+!p2@Lrrfip1!0.60!74.15!Lrrfip1;;chr13:31898729..31898761,+!p1@Foxc1!0.60!8.29!Foxc1;;chr2:152223783..152223812,-!p4@Sox12!0.60!7.66!Sox12;;chr2:115891381..115891392,-!p5@Meis2!0.60!6.63!Meis2;;chr3:128916868..128916890,+!p1@Pitx2!0.60!4.35!Pitx2;;chr10:5636374..5636421,-!p1@Esr1!0.60!3.94!Esr1;;chr8:124806048..124806094,+!p1@Zfpm1!0.59!31.90!Zfpm1;;chr14:17407878..17407926,-!p1@Rarb!0.59!7.46!Rarb;;chr13:31898767..31898785,+!p4@Foxc1!0.59!3.73!Foxc1;;chr2:17976799..17976829,+!p5@Mllt10!0.59!3.73!Mllt10;;chr17:46693078..46693097,-!p3@Srf!0.58!13.67!Srf;;chr9:63869850..63869873,-!p2@Smad6!0.58!9.73!Smad6;;chr2:115891409..115891425,-!p2@Meis2!0.58!9.53!Meis2;;chr7:17642018..17642045,-!p4@Hif3a!0.58!3.31!Hif3a;;chr9:57684520..57684612,-!p1@Arid3b!0.57!29.41!Arid3b;;chr4:94718861..94718872,-!p2@Jun!0.57!25.06!Jun;;chr19:7342725..7342784,+!p1@Rcor2!0.57!13.26!Rcor2;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.57!4.56!Ppp1r13l;;chr8:90483433..90483457,-!p2@Zfp423!0.57!3.94!Zfp423;;chr1:189821700..189821713,+!p4@Esrrg!0.57!2.69!Esrrg;;chr6:97879802..97879816,+!p5@Mitf!0.57!2.69!Mitf;;chr17:46693107..46693137,-!p1@Srf!0.56!31.90!Srf;;chr4:120624269..120624302,-!p1@Zfp69!0.56!11.18!Zfp69;;chr7:119822915..119822936,+!p5@Tead1!0.56!4.76!Tead1;;chr9:63869705..63869713,-!p8@Smad6!0.56!3.31!Smad6;;chr8:94881872..94881887,+!p2@Irx5!0.56!2.90!Irx5;;chr13:72101178..72101203,-!p1@Irx1!0.55!4.35!Irx1;;chr9:106356211..106356242,+!p1@Pcbp4!0.54!61.31!Pcbp4;;chr17:37139472..37139514,+!p1@Zfp57!0.54!20.92!Zfp57;;chr3:130813200..130813252,+!p1@Lef1!0.54!13.67!Lef1;;chr2:104966465..104966479,+!p6@Wt1!0.54!2.49!Wt1;;chr13:73397958..73397994,+!p1@Irx4!0.54!2.49!Irx4;;chr10:119913266..119913277,-!p6@Hmga2!0.54!2.49!Hmga2;;chr8:87225702..87225726,+!p3@Lyl1!0.53!5.59!Lyl1;;chr11:98789140..98789168,+!p5@Rara!0.53!4.35!Rara;;chr15:103085690..103085710,-!p3@Nfe2!0.53!2.69!Nfe2;;chr10:92773591..92773623,-!p1@Elk3!0.52!67.52!Elk3;;chr9:71743854..71743909,-!p1@Tcf12!0.52!23.61!Tcf12;;chr9:106356243..106356264,+!p2@Pcbp4!0.52!12.43!Pcbp4;;chr4:82151148..82151159,-!p5@Nfib!0.52!8.08!Nfib;;chr10:80870405..80870428,-!p4@Nfic!0.52!7.46!Nfic;;chr13:72101161..72101177,-!p2@Irx1!0.52!3.52!Irx1;;chr3:29911926..29911942,-!p13@Mecom!0.52!2.28!Mecom;;chrX:45807489..45807502,-!p2@Elf4!0.51!8.70!Elf4;;chr10:62327990..62328025,-!p2@Tet1!0.51!3.94!Tet1;;chr2:38206744..38206766,+!p1@Lhx2!0.51!2.90!Lhx2;;chr6:53523358..53523388,+!p1@Creb5!0.50!33.97!Creb5;;chr4:148275237..148275311,+!p2@Casz1!0.50!11.18!Casz1;;chr4:13670571..13670625,+!p1@Runx1t1!0.50!7.25!Runx1t1;;chr13:22036953..22037009,+!p1@Zfp184!0.50!7.04!Zfp184;;chr11:99092312..99092333,-!p4@Smarce1!0.50!3.52!Smarce1;;chr18:14131020..14131033,-!p4@Zfp521!0.50!3.11!Zfp521;;chr11:98789099..98789124,+!p3@Rara!0.49!8.29!Rara;;chr18:14130694..14130697,-!p2@Zfp521!0.49!5.80!Zfp521;;chr6:52154386..52154407,-!p2@Hoxa5!0.49!2.90!Hoxa5;;chr10:5636354..5636373,-!p2@Esr1!0.49!2.07!Esr1;;chr4:87452167..87452178,-!p8@Mllt3!0.49!2.07!Mllt3;;chr1:170362040..170362113,-!p2@Pbx1!0.48!20.92!Pbx1;;chr14:52935788..52935817,-!p2@Sall2!0.48!5.39!Sall2;;chr2:115891427..115891441,-!p4@Meis2!0.48!5.18!Meis2;;chr13:117099847..117099907,-!p1@Isl1!0.48!4.35!Isl1;;chr8:94325847..94325869,-!p3@Irx3!0.48!3.73!Irx3;;chr13:78339428..78339466,-!p2@Nr2f1!0.48!3.11!Nr2f1;;chr9:106356265..106356276,+!p4@Pcbp4!0.47!3.73!Pcbp4;;chr6:53523332..53523343,+!p2@Creb5!0.47!3.11!Creb5;;chr15:40486854..40486867,+!p7@Zfpm2!0.47!2.49!Zfpm2;;chr8:123640090..123640101,+!p2@Foxc2!0.47!2.28!Foxc2;;chr18:35020854..35020869,+!p1@Egr1!0.46!101.49!Egr1;;chr2:115891534..115891589,-!p1@Meis2!0.46!36.45!Meis2;;chr4:13712168..13712218,+!p4@Runx1t1!0.46!3.73!Runx1t1;;chr3:8667033..8667046,-!p3@Hey1!0.46!2.90!Hey1;;chr7:123174485..123174514,-!p6@So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Meis1!0.22!19.88!Meis1;;chr12:100631220..100631300,-!p2@Foxn3!0.22!12.84!Foxn3;;chr2:165213745..165213815,-!p1@Zfp334!0.22!12.84!Zfp334;;chr8:107694628..107694659,+!p1@Cbfb!0.22!12.63!Cbfb;;chr15:61816932..61816952,+!p2@Myc!0.22!11.81!Myc;;chr7:25292331..25292421,+!p1@Zfp428!0.22!10.15!Zfp428;;chr8:72498266..72498306,-!p3@Gatad2a!0.22!9.53!Gatad2a;;chr7:77511234..77511302,-!p2@Nr2f2!0.22!9.32!Nr2f2;;chr11:16908650..16908690,-!p1@Plek!0.22!8.49!Plek;;chr11:72990738..72990763,+!p2@LOC100047518,p2@Tax1bp3!0.22!7.66!Tax1bp3;;chr6:133985657..133985707,+!p3@Etv6!0.22!7.66!Etv6;;chr17:27693788..27693803,+!p3@Hmga1,p4@Hmga1-rs1!0.22!6.01!Hmga1;;chrX:53599567..53599592,+!p1@Zfp449!0.22!5.59!Zfp449;;chr17:69732364..69732405,+!p2@Zfp161!0.22!4.56!Zfp161;;chr5:76733499..76733532,-!p2@Clock!0.22!3.94!Clock;;chr7:19679964..19679982,+!p1@Six5!0.22!3.52!Six5;;chr2:91864300..91864379,-!p2@Creb3l1!0.22!3.52!Creb3l1;;chr8:90483459..90483475,-!p1@Zfp423!0.22!3.31!Zfp423;;chr6:51382677..51382783,+!p1@Nfe2l3!0.22!3.11!Nfe2l3;;chr6:115803317..115803361,-!p2@Mbd4!0.22!2.90!Mbd4;;chr6:72739234..72739256,-!p2@Tcf7l1!0.22!2.69!Tcf7l1;;chr11:3189683..3189744,+!p2@Patz1!0.22!2.28!Patz1;;chr2:181327403..181327432,-!p3@Znf512b!0.22!2.07!Znf512b;;chr11:102178005..102178022,-!p8@Ubtf!0.22!1.66!Ubtf;;chr7:56136974..56136989,-!p4@E2f8!0.22!1.66!E2f8;;chr10:62328047..62328076,-!p3@Tet1!0.22!1.45!Tet1;;chr14:65568651..65568657,-!p4@Hmbox1!0.22!1.45!Hmbox1;;chrX:45245621..45245632,-!p3@Smarca1!0.22!1.24!Smarca1;;chrX:48559194..48559210,-!p4@Mbnl3!0.22!1.04!Mbnl3;;chr4:133309775..133309784,-!p15@Arid1a!0.22!1.04!Arid1a;;chr9:96159116..96159130,+!p6@Tfdp2!0.22!1.04!Tfdp2;;chr8:94325273..94325288,-!p5@Irx3!0.22!1.04!Irx3;;chr2:115890495..115890507,-!p16@Meis2!0.22!0.83!Meis2;;chrX:98624993..98625047,+!p1@Nono!0.21!246.89!Nono;;chr9:110034519..110034606,+!p1@Smarcc1!0.21!62.55!Smarcc1;;chr1:182499044..182499091,+!p1@Parp1!0.21!48.47!Parp1;;chr7:134169762..134169795,-!p3@Maz!0.21!12.63!Maz;;chr5:39075982..39076052,-!p1@Zfp518b!0.21!9.94!Zfp518b;;chr19:37509324..37509337,+!p1@Hhex!0.21!9.73!Hhex;;chr6:133985993..133986029,+!p2@Etv6!0.21!8.91!Etv6;;chr3:8666963..8666978,-!p1@Hey1!0.21!8.70!Hey1;;chr15:76287876..76287894,+!p1@Scx!0.21!7.25!Scx;;chr5:147760305..147760324,+!p2@Gtf3a!0.21!6.42!Gtf3a;;chr17:84105477..84105509,+!p3@Mta3!0.21!4.97!Mta3;;chr4:62626594..62626651,+!p1@Zfp618!0.21!4.76!Zfp618;;chr13:58503894..58503895,-!p4@Hnrnpk!0.21!4.14!Hnrnpk;;chr13:15555079..15555136,+!p3@Gli3!0.21!3.94!Gli3;;chr16:4214034..4214070,-!p@chr16:4214034..4214070,-!0.21!3.73!Crebbp;;chr11:23978078..23978096,+!p4@Bcl11a!0.21!3.73!Bcl11a;;chr8:107694596..107694619,+!p4@Cbfb!0.21!3.52!Cbfb;;chr6:124959131..124959160,+!p4@Zfp384!0.21!3.31!Zfp384;;chr18:35721916..35721927,+!p3@Matr3!0.21!3.31!Matr3;;chrX:98449805..98449834,+!p3@Foxo4!0.21!3.31!Foxo4;;chr7:97591412..97591431,+!p2@Crebzf!0.21!3.11!Crebzf;;chr13:56804865..56804898,+!p3@Smad5!0.21!3.11!Smad5;;chr6:124959016..124959061,+!p3@Zfp384!0.21!3.11!Zfp384;;chr1:170361826..170361844,-!p9@Pbx1!0.21!2.49!Pbx1;;chr5:77524304..77524315,-!p5@Hopx!0.21!2.28!Hopx;;chr11:23978111..23978134,+!p3@Bcl11a!0.21!2.28!Bcl11a;;chrX:103124736..103124747,-!p6@Atrx!0.21!1.86!Atrx;;chr18:35721821..35721828,+!p4@Matr3!0.21!1.86!Matr3;;chr19:55817590..55817625,+!p11@Tcf7l2!0.21!1.45!Tcf7l2;;chr10:127176667..127176679,+!p2@Zbtb39!0.21!1.45!Zbtb39;;chr3:9610033..9610040,-!p3@Zfp704!0.21!1.45!Zfp704;;chr13:83663600..83663625,+!p6@Mef2c!0.21!1.45!Mef2c;;chr17:46693053..46693064,-!p4@Srf!0.21!1.24!Srf;;chr4:102786990..102786999,+!p11@Mier1!0.21!1.24!Mier1;;chr10:107769229..107769238,+!p3@Pawr!0.21!1.24!Pawr;;chr2:115891680..115891701,-!p12@Meis2!0.21!1.04!Meis2;;chr3:30408384..30408431,-!p4@Mecom!0.21!1.04!Mecom;;chr5:77695241..77695257,+!p10@Rest!0.21!0.83!Rest;;chr2:152223762..152223777,-!p8@Sox12!0.21!0.83!Sox12;;chr9:71743910..71743915,-!p7@Tcf12!0.21!0.83!Tcf12;;chr17:46692986..46692993,-!p6@Srf!0.21!0.83!Srf;;chr19:45225149..45225186,+!p1@Tlx1!0.21!0.62!Tlx1;;chr4:114730015..114730042,+!p7@Tal1!0.21!0.62!Tal1;;chr4:148178459..148178482,+!p4@Casz1!0.21!0.62!Casz1;;chr3:29912169..29912182,-!p12@Mecom!0.21!0.62!Mecom;;chr2:81893535..81893548,+!p1@Zfp804a!0.21!0.62!Zfp804a;;chr4:133312435..133312454,-!p22@Arid1a!0.21!0.62!Arid1a;;chr3:107398056..107398082,+!p1@Alx3!0.21!0.62!Alx3;;chr3:8667049..8667056,-!p5@Hey1!0.21!0.62!Hey1;;chr10:119913954..119913972,-!p8@Hmga2!0.21!0.62!Hmga2;;chr11:59319796..59319801,-!p6@Zkscan17!0.21!0.62!Zkscan17;;chr10:119913301..119913302,-!p11@Hmga2!0.21!0.62!Hmga2;;chr12:105711446..105711464,-!p1@Gsc!0.21!0.62!Gsc;;chr10:119913974..119913992,-!p9@Hmga2!0.21!0.62!Hmga2;;chr13:48758358..48758415,+!p2@Barx1!0.21!0.62!Barx1;;chr12:87702380..87702394,+!p6@Esrrb!0.21!0.62!Esrrb;;chr14:52948124..52948148,-!p7@Sall2!0.21!0.62!Sall2;;chr7:89137554..89137565,-!p2@Bnc1!0.21!0.62!Bnc1;;chr8:94325779..94325791,-!p7@Irx3!0.21!0.62!Irx3;;chr5:138187918..138187929,+!p20@Tsc22d4!0.21!0.62!Tsc22d4;;chr7:123182318..123182332,-!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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0004140,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011313
 |is_obsolete=
+|library_id=CNhs10586
+|library_id_phase_based=2:CNhs10586
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;331
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;331
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E11.CNhs10586.331-24E9.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E11.CNhs10586.331-24E9.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E11.CNhs10586.331-24E9.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E11.CNhs10586.331-24E9.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E11.CNhs10586.331-24E9.mm9.nobarcode.rdna.fa.gz
 |name=heart, embryo E11
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10586,LSID653,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=-0.0128535497779779,0,0,0,0,0,0.754874657684428,0,0,0,0,0.59036246807822,0,0,0,0,0,0,-0.0413666890027813,0,0,0,0,0,0,0,0,0,0,0,0,0.000241838411667937,-0.016156550154816,0,0,0,0,0,-0.0931831333794804,0,0.0776363163719676,-0.0570192849916203,0.0388299619884644,0,0,0,0,0,0,0,0,0,0,0,0,0.323139336995959,0,0,0,0,0,0,0,0,0,0,0.0350706477594178,-0.0485549587137298,0.298901979615187,0.139645244758489,0,0,-0.00124089862510446,-0.00391225566838527,0,0,0,-0.213249663442016,-0.287216280741754,-0.0788315948399074,0,0,0,0,0,0,-0.117666078170211,-0.207308392763974,-0.22892674105495,0,0,0,0,0.0322874718818683
 |rna_box=24
 |rna_catalog_number=
@@ Line 56: / Line 73: @@
 |rna_rin=
 |rna_sample_type=
-|rna_tube_id=24E9
+|rna_tube_id=2.40E+10
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 97: @@
 |top_motifs=HOX{A5,B5}:3.20313119147;SRF:2.38961543199;GATA4:2.08969672095;MEF2{A,B,C,D}:1.96117236344;GATA6:1.71068379222;RXR{A,B,G}:1.69822797862;HIF1A:1.43564618288;NR5A1,2:1.38215408251;EVI1:1.3191845153;NANOG{mouse}:1.29293445164;NFE2L1:1.150815354;TEAD1:1.14840468541;FOXL1:1.06912843954;POU3F1..4:0.999022794969;ZNF143:0.997774363697;E2F1..5:0.890487467002;IKZF2:0.868140908793;MZF1:0.862068799268;PRDM1:0.844183602467;NFY{A,B,C}:0.838841452548;GFI1:0.789725847619;PATZ1:0.783198256213;SOX17:0.778274282764;EN1,2:0.769532381701;IKZF1:0.76258528623;ALX1:0.751257523593;RREB1:0.736983246802;SOX{8,9,10}:0.727853668386;NKX2-1,4:0.685444271149;UFEwm:0.64577528394;TGIF1:0.589571433095;GFI1B:0.573811980401;SOX2:0.570958496842;HES1:0.565267777159;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.559262705533;PITX1..3:0.550296601458;HMGA1,2:0.53563112316;NR3C1:0.530899316231;GCM1,2:0.524928165646;T:0.511586771946;EP300:0.486472900038;ZIC1..3:0.476721867359;SOX5:0.467426646361;ESRRA:0.457184483452;HOXA9_MEIS1:0.456839578281;NRF1:0.425049622378;TOPORS:0.407961694726;MAZ:0.395119711619;XCPE1{core}:0.395090354256;NFATC1..3:0.393221735725;KLF4:0.387004741142;TFDP1:0.342297237163;NR6A1:0.339290801656;TFAP2{A,C}:0.295264682106;HSF1,2:0.280319571447;MYBL2:0.279247296894;TFAP2B:0.266059948954;BREu{core}:0.262910286422;YY1:0.256752126015;CRX:0.242755657668;EBF1:0.221312484961;PDX1:0.220363940795;NANOG:0.195715569402;TFAP4:0.175328266105;PAX2:0.1699496518;EGR1..3:0.161566335948;ELF1,2,4:0.153551111746;TLX1..3_NFIC{dimer}:0.13939843358;FOSL2:0.116195053339;NKX3-1:0.108231191842;MYB:0.0788531272978;CUX2:0.0765435690154;TFCP2:0.0749796158195;ELK1,4_GABP{A,B1}:0.07492326861;PAX8:0.072151837235;SPIB:0.0719776030011;ATF2:0.0701163028916;MAFB:0.0691006301672;CDX1,2,4:0.0609596267806;ESR1:0.0489158024144;HAND1,2:0.0412634575167;HIC1:0.0410518291855;CDC5L:0.0233623007487;ATF4:0.0209326321798;ZFP161:0.00743854210218;HOX{A4,D4}:0.00230922097473;PAX4:-0.00531779997314;GTF2A1,2:-0.0125975669177;SP1:-0.0133709850413;TEF:-0.0202664660367;AR:-0.0217310767235;TBX4,5:-0.0244426090222;SPI1:-0.0309919583323;PAX5:-0.0354985964265;GTF2I:-0.0363781278028;RFX2..5_RFXANK_RFXAP:-0.0380480519649;JUN:-0.0528198591978;PAX1,9:-0.0589343136163;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0703577188405;NKX2-2,8:-0.0744890594072;RORA:-0.0849285112327;SMAD1..7,9:-0.0895439913596;MTF1:-0.0897867152561;CREB1:-0.133761467066;NHLH1,2:-0.136112435208;RBPJ:-0.152361770463;GZF1:-0.156771988623;FOXP1:-0.165368498086;FOXO1,3,4:-0.168795526677;FOX{I1,J2}:-0.180071475315;TBP:-0.187311748292;MTE{core}:-0.19395289612;ETS1,2:-0.204893746545;STAT1,3:-0.213704689183;ZBTB16:-0.225963590701;PBX1:-0.226251501608;ZBTB6:-0.230094760271;ARID5B:-0.245756335126;NKX6-1,2:-0.257621556485;ZNF238:-0.270817471009;AIRE:-0.2766024956;NR1H4:-0.278308037563;FOXD3:-0.284906082712;ZNF148:-0.288729671362;MED-1{core}:-0.289482002603;NFE2L2:-0.291881495384;RFX1:-0.293888595937;NKX3-2:-0.320040594541;NKX2-3_NKX2-5:-0.321898925085;FOXP3:-0.329889618502;SREBF1,2:-0.344213379732;ATF5_CREB3:-0.347759130539;PAX6:-0.349120403041;FOXA2:-0.359707562375;GLI1..3:-0.412655581788;OCT4_SOX2{dimer}:-0.413449545082;ZNF423:-0.413893414503;AHR_ARNT_ARNT2:-0.415787913654;ONECUT1,2:-0.442557175954;LEF1_TCF7_TCF7L1,2:-0.445967588306;ZNF384:-0.464185242689;HNF1A:-0.501035905414;RUNX1..3:-0.503379308587;HBP1_HMGB_SSRP1_UBTF:-0.524750411758;RXRA_VDR{dimer}:-0.56566276408;BACH2:-0.57012376534;FOX{F1,F2,J1}:-0.577693553178;PRRX1,2:-0.582909801823;HNF4A_NR2F1,2:-0.583148932208;HMX1:-0.583228874185;NFE2:-0.593159193182;MYFfamily:-0.605139603903;NFIL3:-0.622216097286;NFKB1_REL_RELA:-0.637861415467;IRF7:-0.642647741264;TP53:-0.644372577084;POU2F1..3:-0.644747287609;REST:-0.646079550559;FOX{D1,D2}:-0.651339071766;TLX2:-0.668916315837;VSX1,2:-0.688540972469;bHLH_family:-0.696859358881;DBP:-0.741378832204;LHX3,4:-0.751127412164;STAT5{A,B}:-0.860780280612;HLF:-0.864397911789;FOXN1:-0.86963694092;FOS_FOS{B,L1}_JUN{B,D}:-0.872438137571;POU5F1:-0.955791223491;IRF1,2:-0.957797460308;ALX4:-0.995016597333;SNAI1..3:-0.996202712148;FOXQ1:-1.02237353647;ZEB1:-1.03118184948;MYOD1:-1.04930831541;POU6F1:-1.07313339931;POU1F1:-1.07600217249;ADNP_IRX_SIX_ZHX:-1.0781699294;BPTF:-1.08664980852;DMAP1_NCOR{1,2}_SMARC:-1.13896808094;FOXM1:-1.17804373492;ATF6:-1.18632864104;PPARG:-1.25713267565;LMO2:-1.26066381002;NFIX:-1.36387538908;SPZ1:-1.44144913618;CEBPA,B_DDIT3:-1.48560820305;TAL1_TCF{3,4,12}:-1.4967097031;STAT2,4,6:-1.56482388887
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:331-24E9;search_select_hide=table117:331-24E9
 }}

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FF:331-24E9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:10, 4 June 2020

CNhs10586

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0