FF:821-26I6: Difference between revisions

Latest revision as of 19:20, 4 June 2020

Name:	heart, neonate N20
Species:	Mouse (Mus musculus)
Library ID:	CNhs11127
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	heart
dev stage	20 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004919

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11127		CAGE		DRX008983		DRR009857

Accession ID Mm9

Library id		BAM		CTSS
CNhs11127		DRZ001282		DRZ002665

Accession ID Mm10

Library id		BAM		CTSS
CNhs11127		DRZ012632		DRZ014015

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11127

0	0
1	0
10	0.904
100	0
1000	0.833
1001	0.629
1002	0.0322
1003	0.184
1004	0
1005	0
1006	0.574
1007	-0.0188
1008	0
1009	0.22
101	-0.114
1010	0
1011	7.48101e-4
1012	0.0135
1013	-0.0762
1014	-0.0281
1015	-0.176
1016	0.0569
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	0.817
1023	0
1024	0.547
1025	0
1026	0
1027	0
1028	0.0593
1029	-0.0396
103	0.0386
1030	0
1031	0.0541
1032	0.242
1033	-0.00724
1034	0
1035	0.577
1036	-0.307
1037	0
1038	0.201
1039	0.655
104	0
1040	0.136
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11127

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.34
MA0003.1	MA0003.1	0.324
MA0004.1	MA0004.1	0.12
MA0006.1	MA0006.1	0.183
MA0007.1	MA0007.1	0.616
MA0009.1	MA0009.1	0.565
MA0014.1	MA0014.1	0.57
MA0017.1	MA0017.1	0.978
MA0018.2	MA0018.2	0.357
MA0019.1	MA0019.1	0.286
MA0024.1	MA0024.1	7.06249e-6
MA0025.1	MA0025.1	0.28
MA0027.1	MA0027.1	0.431
MA0028.1	MA0028.1	0.0149
MA0029.1	MA0029.1	0.87
MA0030.1	MA0030.1	0.63
MA0031.1	MA0031.1	0.841
MA0035.2	MA0035.2	6.06957e-6
MA0038.1	MA0038.1	0.133
MA0039.2	MA0039.2	0.842
MA0040.1	MA0040.1	0.754
MA0041.1	MA0041.1	0.422
MA0042.1	MA0042.1	0.401
MA0043.1	MA0043.1	0.362
MA0046.1	MA0046.1	4.28322e-16
MA0047.2	MA0047.2	0.762
MA0048.1	MA0048.1	0.587
MA0050.1	MA0050.1	0.884
MA0051.1	MA0051.1	0.396
MA0052.1	MA0052.1	3.91204e-58
MA0055.1	MA0055.1	0.463
MA0057.1	MA0057.1	0.514
MA0058.1	MA0058.1	0.0992
MA0059.1	MA0059.1	0.13
MA0060.1	MA0060.1	7.99355e-13
MA0061.1	MA0061.1	0.552
MA0062.2	MA0062.2	1.75611e-5
MA0065.2	MA0065.2	0.0241
MA0066.1	MA0066.1	0.815
MA0067.1	MA0067.1	0.79
MA0068.1	MA0068.1	0.305
MA0069.1	MA0069.1	0.149
MA0070.1	MA0070.1	0.713
MA0071.1	MA0071.1	4.7318e-4
MA0072.1	MA0072.1	0.403
MA0073.1	MA0073.1	0.46
MA0074.1	MA0074.1	0.175
MA0076.1	MA0076.1	0.00205
MA0077.1	MA0077.1	0.911
MA0078.1	MA0078.1	0.736
MA0079.2	MA0079.2	0.272
MA0080.2	MA0080.2	0.00555
MA0081.1	MA0081.1	0.978
MA0083.1	MA0083.1	1.7e-14
MA0084.1	MA0084.1	0.847
MA0087.1	MA0087.1	0.299
MA0088.1	MA0088.1	0.735
MA0090.1	MA0090.1	2.85691e-5
MA0091.1	MA0091.1	0.934
MA0092.1	MA0092.1	0.315
MA0093.1	MA0093.1	0.0958
MA0099.2	MA0099.2	0.121
MA0100.1	MA0100.1	0.0128
MA0101.1	MA0101.1	0.472
MA0102.2	MA0102.2	0.0429
MA0103.1	MA0103.1	0.00274
MA0104.2	MA0104.2	0.045
MA0105.1	MA0105.1	0.582
MA0106.1	MA0106.1	0.773
MA0107.1	MA0107.1	0.703
MA0108.2	MA0108.2	0.23
MA0111.1	MA0111.1	0.943
MA0112.2	MA0112.2	8.68989e-6
MA0113.1	MA0113.1	0.214
MA0114.1	MA0114.1	0.555
MA0115.1	MA0115.1	0.2
MA0116.1	MA0116.1	0.53
MA0117.1	MA0117.1	0.45
MA0119.1	MA0119.1	0.139
MA0122.1	MA0122.1	0.0419
MA0124.1	MA0124.1	0.775
MA0125.1	MA0125.1	0.298
MA0131.1	MA0131.1	0.322
MA0135.1	MA0135.1	0.408
MA0136.1	MA0136.1	3.68508e-4
MA0137.2	MA0137.2	0.15
MA0138.2	MA0138.2	0.0154
MA0139.1	MA0139.1	0.624
MA0140.1	MA0140.1	0.00161
MA0141.1	MA0141.1	2.04288e-10
MA0142.1	MA0142.1	0.0692
MA0143.1	MA0143.1	0.279
MA0144.1	MA0144.1	0.68
MA0145.1	MA0145.1	0.0393
MA0146.1	MA0146.1	0.0438
MA0147.1	MA0147.1	0.0853
MA0148.1	MA0148.1	0.982
MA0149.1	MA0149.1	0.895
MA0150.1	MA0150.1	0.0482
MA0152.1	MA0152.1	0.385
MA0153.1	MA0153.1	3.84587e-11
MA0154.1	MA0154.1	0.0413
MA0155.1	MA0155.1	0.277
MA0156.1	MA0156.1	0.00405
MA0157.1	MA0157.1	0.493
MA0159.1	MA0159.1	2.07955e-6
MA0160.1	MA0160.1	5.28826e-6
MA0162.1	MA0162.1	0.149
MA0163.1	MA0163.1	0.71
MA0164.1	MA0164.1	0.13
MA0258.1	MA0258.1	0.00111
MA0259.1	MA0259.1	0.277

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11127

Novel motif	Logo	P-value
1	1	0.147
10	10	0.886
100	100	0.721
101	101	0.538
102	102	0.847
103	103	0.917
104	104	0.644
105	105	0.08
106	106	0.216
107	107	0.232
108	108	0.943
109	109	0.287
11	11	0.372
110	110	0.262
111	111	0.0878
112	112	0.803
113	113	0.806
114	114	0.0674
115	115	0.532
116	116	0.672
117	117	0.743
118	118	0.698
119	119	0.132
12	12	0.593
120	120	0.154
121	121	0.115
122	122	0.624
123	123	0.674
124	124	0.466
125	125	0.853
126	126	0.476
127	127	0.384
128	128	0.555
129	129	0.0707
13	13	0.00106
130	130	0.617
131	131	0.815
132	132	0.741
133	133	0.775
134	134	0.596
135	135	0.73
136	136	0.918
137	137	0.175
138	138	0.0914
139	139	0.0574
14	14	0.0804
140	140	0.56
141	141	0.63
142	142	0.941
143	143	0.41
144	144	0.491
145	145	0.474
146	146	0.57
147	147	0.587
148	148	0.461
149	149	7.67032e-4
15	15	0.238
150	150	0.495
151	151	0.177
152	152	0.0594
153	153	0.562
154	154	0.752
155	155	0.0243
156	156	0.0261
157	157	0.859
158	158	0.144
159	159	0.777
160	160	0.288
161	161	0.909
162	162	0.787
163	163	0.219
164	164	0.406
165	165	4.27339e-4
166	166	0.226
167	167	0.601
168	168	0.0818
169	169	7.45152e-5
17	17	0.167
18	18	0.181
19	19	0.0241
2	2	0.522
20	20	0.774
21	21	0.311
22	22	0.0223
23	23	0.423
24	24	0.978
25	25	0.679
26	26	0.133
27	27	0.9
28	28	0.806
29	29	0.371
3	3	0.422
30	30	0.587
31	31	0.579
32	32	0.957
33	33	0.646
34	34	0.229
35	35	0.886
36	36	0.224
37	37	0.00709
38	38	0.715
39	39	0.455
4	4	0.349
40	40	0.416
41	41	0.779
42	42	0.93
43	43	0.194
44	44	0.96
45	45	0.522
46	46	0.709
47	47	0.898
48	48	0.498
49	49	0.168
5	5	0.237
50	50	0.853
51	51	0.558
52	52	0.307
53	53	0.657
54	54	0.302
55	55	0.868
56	56	0.559
57	57	0.412
58	58	0.351
59	59	0.0339
6	6	0.0616
60	60	0.121
61	61	0.591
62	62	0.321
63	63	0.101
64	64	0.742
65	65	0.507
66	66	0.118
67	67	0.755
68	68	0.89
69	69	0.0154
7	7	0.0815
70	70	0.358
71	71	0.184
72	72	0.613
73	73	0.0437
74	74	0.613
75	75	0.811
76	76	0.897
77	77	0.387
78	78	0.0407
79	79	0.76
8	8	0.832
80	80	0.288
81	81	0.622
82	82	0.164
83	83	0.454
84	84	0.436
85	85	0.00271
86	86	0.713
87	87	0.425
88	88	0.631
89	89	0.0228
9	9	0.0741
90	90	0.881
91	91	0.419
92	92	0.199
93	93	0.356
94	94	0.789
95	95	0.276
96	96	0.473
97	97	0.919
98	98	0.293
99	99	0.933

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11127

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011427 mouse heart- neonate N20 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000308 (mouse neonate N20 sample)
0011427 (mouse heart- neonate N20 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0000948,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0003103,UBERON:0005291,UBERON:0001048,UBERON:0006598,UBERON:0002532,UBERON:0004535,UBERON:0005498,UBERON:0003081,UBERON:0001009,UBERON:0004140,UBERON:0009881,UBERON:0006603,UBERON:0004141,UBERON:0004872,UBERON:0003084,UBERON:0007005,UBERON:0004139,UBERON:0004291
+|DRA_sample_Accession=CAGE@SAMD00004919
+|accession_numbers=CAGE;DRX008983;DRR009857;DRZ001282;DRZ002665;DRZ012632;DRZ014015
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000308,FF:0011427
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr9:24578720..24578735,-!p1@Tbx20!2.23!169.88!Tbx20;;chr2:120365588..120365602,-!p2@Zfp106!2.01!166.23!Zfp106;;chr5:77543897..77543911,-!p2@Hopx!1.90!146.64!Hopx;;chr17:26978409..26978442,-!p1@Nkx2-5!1.88!74.12!Nkx2-5;;chr14:63864056..63864102,-!p1@Gata4!1.80!104.09!Gata4;;chr6:97879817..97879857,+!p2@Mitf!1.67!46.20!Mitf;;chr17:14011485..14011507,+!p2@Mllt4!1.63!41.81!Mllt4;;chr1:169548377..169548430,+!p1@Rxrg!1.60!39.18!Rxrg;;chr8:59799772..59799789,+!p1@Hand2!1.54!94.45!Hand2;;chr5:138187775..138187845,+!p7@Tsc22d4!1.51!42.84!Tsc22d4;;chr16:43363190..43363242,+!p2@Zbtb20!1.37!68.13!Zbtb20;;chr5:120285144..120285160,+!p1@Tbx5!1.28!17.98!Tbx5;;chr5:138199361..138199441,+!p2@Tsc22d4!1.26!32.02!Tsc22d4;;chr7:119885539..119885574,+!p3@Tead1!1.24!16.52!Tead1;;chr15:85566184..85566238,+!p1@Ppara!1.21!22.51!Ppara;;chr16:43363152..43363186,+!p3@Zbtb20!1.19!32.89!Zbtb20;;chr5:77544108..77544119,-!p7@Hopx!1.16!13.45!Hopx;;chr2:151969288..151969294,+!p1@Tcf15!1.12!19.01!Tcf15;;chr10:22539932..22539956,-!p1@Tcf21!1.10!30.70!Tcf21;;chr18:11052642..11052659,+!p1@Gata6!1.08!56.58!Gata6;;chr5:77524250..77524300,-!p1@Hopx!1.07!220.47!Hopx;;chr9:96159147..96159204,+!p2@Tfdp2!1.06!19.88!Tfdp2;;chr4:133109285..133109308,+!p1@Nr0b2!1.06!10.53!Nr0b2;;chr11:98636531..98636559,-!p1@Nr1d1!1.04!57.02!Nr1d1;;chr11:101755669..101755686,-!p1@Meox1!1.04!18.27!Meox1;;chr5:77544170..77544181,-!p6@Hopx!1.02!9.50!Hopx;;chr5:77543935..77543947,-!p4@Hopx!1.02!9.36!Hopx;;chr13:73397958..73397994,+!p1@Irx4!1.02!9.36!Irx4;;chr11:96690797..96690813,-!p1@Nfe2l1!1.00!173.69!Nfe2l1;;chr12:37835141..37835194,+!p1@Meox2!1.00!28.22!Meox2;;chr5:135582751..135582788,+!p1@Mlxipl!0.99!36.26!Mlxipl;;chr5:120285161..120285176,+!p2@Tbx5!0.96!8.19!Tbx5;;chr9:48644037..48644067,-!p2@Zbtb16!0.94!19.88!Zbtb16;;chr11:96690779..96690790,-!p3@Nfe2l1!0.94!19.15!Nfe2l1;;chr5:20387850..20387869,-!p1@Phtf2!0.91!76.32!Phtf2;;chr18:11052485..11052508,+!p2@Gata6!0.91!20.61!Gata6;;chr8:94325814..94325839,-!p2@Irx3!0.90!14.91!Irx3;;chr15:101097270..101097290,+!p1@Nr4a1!0.89!72.37!Nr4a1;;chr9:32443818..32443854,+!p2@Ets1!0.89!31.29!Ets1;;chr13:99954640..99954681,+!p1@Zfp366!0.89!25.73!Zfp366;;chr4:48058047..48058062,+!p1@Nr4a3!0.89!10.53!Nr4a3;;chr5:24107779..24107825,-!p1@Smarcd3!0.88!46.49!Smarcd3;;chr9:48644306..48644364,-!p1@Zbtb16!0.88!27.78!Zbtb16;;chr17:87153462..87153473,+!p3@Epas1!0.88!26.17!Epas1;;chr4:148178559..148178603,+!p1@Casz1!0.88!19.88!Casz1;;chr1:92895299..92895373,+!p2@Lrrfip1!0.87!139.47!Lrrfip1;;chr1:191994550..191994623,-!p1@Prox1!0.87!46.64!Prox1;;chr14:64562503..64562524,+!p1@Sox7!0.87!39.77!Sox7;;chr4:150482563..150482655,-!p2@Camta1!0.87!24.27!Camta1;;chr8:94325321..94325366,-!p1@Irx3!0.87!16.23!Irx3;;chr11:70043257..70043263,-!p1@Bcl6b!0.87!11.55!Bcl6b;;chr17:14011529..14011544,+!p7@Mllt4!0.86!6.29!Mllt4;;chr14:63890459..63890484,-!p4@Gata4!0.85!6.14!Gata4;;chr14:63864337..63864381,-!p6@Gata4!0.85!6.14!Gata4;;chr14:19071466..19071550,-!p1@Nr1d2!0.84!42.98!Nr1d2;;chr5:77524231..77524245,-!p3@Hopx!0.84!15.50!Hopx;;chr17:14011545..14011564,+!p6@Mllt4!0.84!5.99!Mllt4;;chr4:120488308..120488366,-!p1@Nfyc!0.83!35.67!Nfyc;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.83!24.12!Ppp1r13l;;chr4:135840573..135840601,+!p1@Zfp46!0.81!46.20!Zfp46;;chr9:87626083..87626108,-!p1@Tbx18!0.81!12.72!Tbx18;;chr17:14011569..14011589,+!p8@Mllt4!0.81!5.41!Mllt4;;chr17:87153240..87153254,+!p1@Epas1!0.79!110.97!Epas1;;chr16:95680889..95680991,-!p1@Erg!0.79!46.05!Erg;;chr8:94325273..94325288,-!p5@Irx3!0.79!6.58!Irx3;;chr14:17408052..17408073,-!p5@Rarb!0.79!5.12!Rarb;;chr1:189432907..189432926,+!p3@Esrrg!0.79!5.12!Esrrg;;chr17:87153440..87153451,+!p4@Epas1!0.78!10.82!Epas1;;chr5:120285130..120285141,+!p3@Tbx5!0.77!4.82!Tbx5;;chr17:87153028..87153049,+!p2@Epas1!0.76!108.04!Epas1;;chr2:168415815..168415872,-!p1@Nfatc2!0.76!28.66!Nfatc2;;chr16:43363968..43364001,+!p7@Zbtb20!0.76!9.21!Zbtb20;;chr7:119822915..119822936,+!p5@Tead1!0.76!8.19!Tead1;;chr6:83299445..83299490,+!p1@Bola3!0.75!217.55!Bola3;;chr16:43364215..43364252,+!p14@Zbtb20!0.75!5.99!Zbtb20;;chr14:63890660..63890687,-!p7@Gata4!0.75!4.68!Gata4;;chr3:94176733..94176794,+!p1@Rorc!0.74!38.74!Rorc;;chr17:26978449..26978458,-!p3@Nkx2-5!0.74!4.53!Nkx2-5;;chr1:87546583..87546595,+!p1@Sp100!0.73!6.43!Sp100;;chr9:121669118..121669179,+!p1@Zfp651!0.72!50.59!Zfp651;;chr11:90252223..90252240,-!p1@Hlf!0.72!39.91!Hlf;;chr6:90412582..90412601,+!p1@Klf15!0.72!22.51!Klf15;;chr11:100720767..100720797,+!p4@Stat5a!0.71!4.09!Stat5a;;chr14:17408022..17408043,-!p6@Rarb!0.71!4.09!Rarb;;chr9:63514630..63514652,-!p8@Smad3!0.71!4.09!Smad3;;chr16:42907676..42907797,+!p1@Zbtb20!0.70!59.21!Zbtb20;;chr14:67853457..67853482,+!p2@Ebf2!0.70!5.85!Ebf2;;chr19:6996243..6996293,-!p1@Esrra!0.69!49.42!Esrra;;chr6:145814003..145814056,-!p1@Bhlhe41!0.69!12.43!Bhlhe41;;chr8:94325847..94325869,-!p3@Irx3!0.69!6.58!Irx3;;chr19:23215509..23215523,+!p4@Klf9!0.69!5.12!Klf9;;chr11:52096066..52096081,-!p2@Tcf7!0.69!4.97!Tcf7;;chr1:191993385..191993405,-!p3@Prox1!0.69!3.95!Prox1;;chr5:138187867..138187879,+!p21@Tsc22d4!0.69!3.95!Tsc22d4;;chr8:74842952..74842970,+!p1@Klf2!0.68!293.57!Klf2;;chr4:122911086..122911112,+!p1@Heyl!0.68!51.17!Heyl;;chr5:20387832..20387841,-!p2@Phtf2!0.68!7.02!Phtf2;;chr15:85566014..85566045,+!p3@Ppara!0.68!5.41!Ppara;;chr17:51971960..51971979,-!p1@Satb1!0.68!5.26!Satb1;;chr7:123174485..123174514,-!p6@Sox6!0.68!4.82!Sox6;;chr5:125538703..125538715,-!p5@Ncor2!0.68!4.68!Ncor2;;chr14:63890491..63890516,-!p2@Gata4!0.68!3.80!Gata4;;chr12:37835248..37835260,+!p4@Meox2!0.68!3.80!Meox2;;chr7:119822957..119822980,+!p2@Tead1!0.67!20.47!Tead1;;chr18:11052606..11052633,+!p4@Gata6!0.67!10.38!Gata6;;chr7:52963269..52963305,+!p4@Dbp!0.67!5.41!Dbp;;chr1:189432881..189432903,+!p2@Esrrg!0.67!3.65!Esrrg;;chr2:181406327..181406350,-!p1@Sox18!0.66!130.56!Sox18;;chr19:23215673..23215753,+!p1@Klf9!0.65!59.06!Klf9;;chr4:154010918..154010931,-!p1@Prdm16!0.65!11.55!Prdm16;;chr7:123174606..123174636,-!p5@Sox6!0.65!4.68!Sox6;;chr2:152758901..152758925,-!p1@Foxs1!0.64!17.25!Foxs1;;chr9:96653072..96653154,-!p1@Zbtb38!0.64!10.23!Zbtb38;;chr13:64253718..64253763,-!p2@Zfp367!0.64!9.80!Zfp367;;chr9:48644284..48644305,-!p4@Zbtb16!0.64!4.68!Zbtb16;;chr12:87762578..87762612,+!p1@Esrrb!0.64!3.36!Esrrb;;chr15:85566241..85566253,+!p6@Ppara!0.64!3.36!Ppara;;chr17:26978521..26978536,-!p2@Nkx2-5!0.64!3.36!Nkx2-5;;chr12:84828663..84828679,-!p1@Dpf3!0.63!29.39!Dpf3;;chr8:79426176..79426275,+!p1@Nr3c2!0.63!19.01!Nr3c2;;chr5:125538737..125538781,-!p2@Ncor2!0.63!13.60!Ncor2;;chr18:11052456..11052477,+!p3@Gata6!0.63!11.55!Gata6;;chr11:23670750..23670789,-!p2@Rel!0.63!6.87!Rel;;chr17:46693107..46693137,-!p1@Srf!0.62!37.13!Srf;;chr17:47873985..47874056,+!p1@Tfeb!0.62!31.14!Tfeb;;chr6:97757008..97757061,+!p1@Mitf!0.62!15.64!Mitf;;chr5:77524304..77524315,-!p5@Hopx!0.62!7.46!Hopx;;chr4:150482353..150482386,-!p6@Camta1!0.62!3.22!Camta1;;chr14:63890691..63890718,-!p8@Gata4!0.62!3.22!Gata4;;chr15:40486566..40486600,+!p1@Zfpm2!0.61!21.35!Zfpm2;;chr14:18493386..18493464,+!p1@Thrb!0.61!13.74!Thrb;;chr4:148178529..148178548,+!p3@Casz1!0.61!8.19!Casz1;;chr19:23215469..23215494,+!p2@Klf9!0.61!5.12!Klf9;;chr12:37835203..37835218,+!p3@Meox2!0.61!3.80!Meox2;;chr13:73398004..73398017,+!p2@Irx4!0.61!3.07!Irx4;;chr4:151235807..151235870,-!p1@Camta1!0.60!58.77!Camta1;;chr1:193007123..193007139,-!p1@Atf3!0.60!19.59!Atf3;;chr16:43363837..43363842,+!p11@Zbtb20!0.60!6.14!Zbtb20;;chr4:135840623..135840632,+!p5@Zfp46!0.60!4.24!Zfp46;;chr4:97444471..97444514,+!p1@Nfia!0.59!94.88!Nfia;;chr5:122500142..122500167,-!p2@Cux2!0.59!7.02!Cux2;;chr17:46692970..46692977,-!p5@Srf!0.59!4.09!Srf;;chr9:48644013..48644027,-!p5@Zbtb16!0.59!3.65!Zbtb16;;chr12:87702380..87702394,+!p6@Esrrb!0.59!2.92!Esrrb;;chr4:55545337..55545357,-!p1@Klf4!0.58!50.44!Klf4;;chr6:115311270..115311298,+!p1@Pparg!0.58!4.39!Pparg;;chr6:97879802..97879816,+!p5@Mitf!0.58!2.78!Mitf;;chr11:44431687..44431706,+!p2@Ebf1!0.57!15.35!Ebf1;;chr16:43619057..43619078,+!p8@Zbtb20!0.57!6.43!Zbtb20;;chr13:99954688..99954710,+!p2@Zfp366!0.57!5.99!Zfp366;;chr7:74517982..74518012,-!p2@Mef2a!0.57!5.70!Mef2a;;chr5:122499831..122499891,-!p1@Cux2!0.57!4.53!Cux2;;chr12:37835120..37835133,+!p2@Meox2!0.57!4.24!Meox2;;chr7:74517658..74517731,-!p1@Mef2a!0.56!147.95!Mef2a;;chr4:154010940..154010962,-!p3@Prdm16!0.56!6.73!Prdm16;;chr6:90412608..90412630,+!p2@Klf15!0.56!6.29!Klf15;;chr7:4947625..4947634,-!p6@Zfp579!0.56!4.82!Zfp579;;chr6:115311030..115311065,+!p4@Pparg!0.56!4.09!Pparg;;chr10:80889867..80889924,-!p1@Nfic!0.55!90.94!Nfic;;chr5:138187195..138187255,+!p1@Tsc22d4!0.54!135.53!Tsc22d4;;chr7:144506077..144506128,-!p1@Ebf3!0.54!6.73!Ebf3;;chr5:138187918..138187929,+!p20@Tsc22d4!0.54!2.49!Tsc22d4;;chr3:98186461..98186476,+!p2@Zfp697!0.54!2.49!Zfp697;;chr12:16817746..16817784,+!p1@E2f6!0.53!53.51!E2f6;;chr7:52960555..52960662,+!p1@Dbp!0.53!25.88!Dbp;;chr16:42907554..42907591,+!p5@Zbtb20!0.53!7.16!Zbtb20;;chr5:24107903..24107917,-!p6@Smarcd3!0.53!3.22!Smarcd3;;chr14:67853632..67853674,+!p3@Ebf2!0.53!3.07!Ebf2;;chr9:96159225..96159249,+!p5@Tfdp2!0.53!2.78!Tfdp2;;chr8:94881872..94881887,+!p2@Irx5!0.53!2.63!Irx5;;chr17:28369739..28369774,+!p2@Ppard!0.52!8.77!Ppard;;chr14:67853425..67853454,+!p1@Ebf2!0.52!3.65!Ebf2;;chr12:87702062..87702081,+!p4@Esrrb!0.52!2.34!Esrrb;;chr14:63890519..63890539,-!p3@Gata4!0.52!2.34!Gata4;;chr18:11052516..11052525,+!p5@Gata6!0.52!2.34!Gata6;;chr10:92773591..92773623,-!p1@Elk3!0.51!65.06!Elk3;;chr17:46693078..46693097,-!p3@Srf!0.51!11.40!Srf;;chr5:138186979..138187025,+!p4@Tsc22d4!0.51!10.23!Tsc22d4;;chr1:170362437..170362478,-!p5@Pbx1!0.51!8.63!Pbx1;;chr13:83663902..83663927,+!p1@Mef2c!0.50!69.59!Mef2c;;chr18:3281034..3281104,-!p1@Crem!0.50!19.88!Crem;;chr14:17407970..17408015,-!p2@Rarb!0.50!7.16!Rarb;;chr11:100712053..100712077,-!p3@Stat5b!0.50!4.82!Stat5b;;chr7:52960730..52960762,+!p3@Dbp!0.50!2.92!Dbp;;chr9:96159210..96159221,+!p10@Tfdp2!0.50!2.19!Tfdp2;;chr8:94325779..94325791,-!p7@Irx3!0.50!2.19!Irx3;;chr13:73397921..73397935,+!p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99450..67599456,-!p8@Arid5b!0.14!0.58!Arid5b;;chr10:70700783..70700832,-!p1@Tfam!0.13!46.35!Tfam;;chr5:139060930..139060975,-!p1@Zfp68!0.13!43.71!Zfp68;;chr2:73730645..73730673,-!p2@Atf2,p2@LOC100047997!0.13!24.71!Atf2;;chr4:141000572..141000629,+!p1@Zbtb17!0.13!22.51!Zbtb17;;chr9:30837968..30838036,+!p1@Zbtb44!0.13!20.47!Zbtb44;;chr15:76181777..76181802,+!p2@Maf1!0.13!19.44!Maf1;;chr3:52072329..52072346,+!p1@Foxo1!0.13!18.13!Foxo1;;chr2:181100089..181100119,+!p1@Zgpat!0.13!10.53!Zgpat;;chr15:99532568..99532636,+!p2@Smarcd1!0.13!10.38!Smarcd1;;chr11:87881569..87881633,+!p2@Vezf1!0.13!8.77!Vezf1;;chr7:6107541..6107572,-!p1@Zfp787!0.13!8.48!Zfp787;;chrX:131543731..131543764,-!p1@Zmat1!0.13!8.19!Zmat1;;chr5:31754831..31754876,+!p1@Zfp512!0.13!8.19!Zfp512;;chr19:37509324..37509337,+!p1@Hhex!0.13!7.89!Hhex;;chr10:114821807..114821852,-!p2@Thap2!0.13!7.46!Thap2;;chr17:21587325..21587361,+!p1@Zfp51!0.13!6.58!Zfp51;;chr17:35031460..35031518,+!p1@Zbtb12!0.13!5.41!Zbtb12;;chrX:7339938..7339963,+!p1@Tfe3!0.13!5.41!Tfe3;;chr8:72663098..72663160,-!p2@LOC100048268,p2@Rfxank!0.13!5.26!Rfxank;;chr6:65728988..65729056,+!p1@Prdm5!0.13!5.26!Prdm5;;chr8:125778131..125778178,+!p1@Zfp276!0.13!4.82!Zfp276;;chr4:82151622..82151643,-!p4@Nfib!0.13!4.24!Nfib;;chr3:89197551..89197606,-!p2@Zbtb7b!0.13!3.36!Zbtb7b;;chr15:79177964..79177986,+!p1@Maff!0.13!3.36!Maff;;chr10:41996471..41996487,-!p4@Foxo3!0.13!2.78!Foxo3;;chr7:135020324..135020368,-!p4@Zfp668!0.13!2.78!Zfp668;;chr6:99216488..99216534,-!p2@Foxp1!0.13!2.63!Foxp1;;chr7:30857891..30857943,-!p1@LOC100505067,p3@Zfp82!0.13!2.49!Zfp82;;chr15:78994907..78994926,-!p1@Sox10!0.13!2.34!Sox10;;chr11:5761871..5761882,+!p3@Aebp1!0.13!2.34!Aebp1;;chr16:92826249..92826325,-!p1@Runx1!0.13!2.19!Runx1;;chr1:74634691..74634719,-!p2@Zfp142!0.13!2.19!Zfp142;;chr10:57206224..57206260,+!p2@Hsf2!0.13!2.05!Hsf2;;chr8:74405860..74405905,+!p2@Zfp709!0.13!1.90!Zfp709;;chr11:18918982..18918993,-!p5@Meis1!0.13!1.75!Meis1;;chr5:32438894..32438908,+!p2@Fosl2!0.13!1.75!Fosl2;;chr7:148513574..148513593,-!p5@Deaf1!0.13!1.61!Deaf1;;chr2:148506935..148506954,+!p2@Gzf1!0.13!1.61!Gzf1;;chr1:181733834..181733845,-!p3@Ahctf1!0.13!1.32!Ahctf1;;chr13:67295432..67295453,+!p1@Zfp455!0.13!1.32!Zfp455;;chr5:120121169..120121171,+!p4@Tbx3!0.13!1.32!Tbx3;;chr4:97444339..97444350,+!p14@Nfia!0.13!1.32!Nfia;;chr3:51144740..51144743,-!p7@Elf2!0.13!1.17!Elf2;;chr9:106356265..106356276,+!p4@Pcbp4!0.13!1.17!Pcbp4;;chr5:65203599..65203617,+!p8@Klf3!0.13!1.17!Klf3;;chr10:67599361..67599372,-!p5@Arid5b!0.13!1.02!Arid5b;;chr8:47825166..47825178,+!p2@Irf2!0.13!1.02!Irf2;;chr12:39507404..39507441,+!p4@Etv1!0.13!0.88!Etv1;;chr13:37870253..37870272,+!p13@Rreb1!0.13!0.88!Rreb1;;chr16:8672238..8672254,-!p2@Carhsp1,p2@Gm9791!0.13!0.88!Carhsp1;;chr3:87966965..87966975,+!p5@Mef2d!0.13!0.73!Mef2d;;chr4:154010334..154010347,-!p8@Prdm16!0.13!0.58!Prdm16;;chr4:154011072..154011095,-!p6@Prdm16!0.13!0.58!Prdm16;;chr17:48015839..48015915,-!p3@Foxp4!0.13!0.58!Foxp4;;chr1:93698068..93698085,+!p2@Twist2!0.13!0.58!Twist2;;chr11:100800901..100800921,-!p4@Stat3!0.13!0.58!Stat3;;chr9:96159427..96159432,+!p11@Tfdp2!0.13!0.58!Tfdp2;;chr15:36937029..36937108,-!p1@Gm10193,p1@Zfp706!0.12!147.08!Zfp706;;chr5:137043112..137043157,-!p1@Cux1!0.12!111.55!Cux1;;chr2:168055853..168055886,-!p1@Adnp,p1@Dpm1!0.12!79.83!Adnp;;chr12:75008961..75009002,+!p1@Hif1a!0.12!72.22!Hif1a;;chr11:62270791..62270834,-!p1@Ncor1!0.12!58.77!Ncor1;;
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0004140,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011427
 |is_obsolete=
+|library_id=CNhs11127
+|library_id_phase_based=2:CNhs11127
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;821
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;821
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N20.CNhs11127.821-26I6.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N20.CNhs11127.821-26I6.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N20.CNhs11127.821-26I6.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N20.CNhs11127.821-26I6.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N20.CNhs11127.821-26I6.mm9.nobarcode.rdna.fa.gz
 |name=heart, neonate N20
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11127,LSID735,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=-0.038825574052187,0,0,0,0,0.0680630911861284,0.695793880427952,0,0,0,0,-0.0250788410393449,0,0,0,0,0,0,0.0816171772028147,0,0.0296301996785983,0,0,0,0,0,0,0,0,0,0,0,0.32948690697899,0,0,0,0,0,-0.0168689910058843,0,0.0313135424841411,-0.521723548317863,0.0362130887547916,0,0,0,0,0,0,0,0,0,0,0.111396940894494,0,0.476247052659934,0,0,0,0,0.0162353439811698,0,0.0060586985919079,0,0,0.0288157614623651,-0.0342525946721112,0.0806373690743147,0.0418834059756905,0.00239611359698644,0,0.0592603993571966,0,0,0.0592603993571966,0,0.0213207694191172,-0.0422707690100671,-0.17957401319814,-0.0195711954827108,0,0,0,0,0,0,-0.00611606527528719,0.121167497245415,0.0493027759967655,0,0,0,0,0.0592603993571966
 |rna_box=26
 |rna_catalog_number=
@@ Line 59: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:821-26I6;search_select_hide=table117:821-26I6
 }}

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FF:821-26I6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:20, 4 June 2020

CNhs11127

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0