FF:857-27C9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005965 | |||
|accession_numbers=CAGE;DRX009143;DRR010017;DRZ001442;DRZ002825;DRZ012792;DRZ014175 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:34642510..34642530,+!p1@Twist1!1.92!248.19!Twist1;;chr3:101814061..101814094,+!p1@Nhlh2!1.77!57.86!Nhlh2;;chr1:140739014..140739032,-!p1@Lhx9!1.74!68.23!Lhx9;;chr3:127336052..127336058,+!p1@Neurog2!1.70!49.08!Neurog2;;chr7:56892217..56892221,-!p1@Dbx1!1.61!39.90!Dbx1;;chr12:28027561..28027591,-!p1@Sox11!1.59!239.02!Sox11;;chr10:119914001..119914078,-!p4@Hmga2!1.55!46.29!Hmga2;;chr2:151907546..151907561,+!p1@Scrt2!1.55!34.32!Scrt2;;chr4:154335024..154335039,+!p1@Hes5!1.53!39.50!Hes5;;chr10:119913278..119913298,-!p2@Hmga2!1.52!69.83!Hmga2;;chr10:119913546..119913583,-!p3@Hmga2!1.52!66.24!Hmga2;;chr11:96143666..96143725,+!p1@Hoxb8!1.52!36.71!Hoxb8;;chr15:102828658..102828678,+!p1@Hoxc6!1.50!30.33!Hoxc6;;chr2:38206580..38206600,+!p2@Lhx2!1.49!36.71!Lhx2;;chr12:3891810..3891829,+!p2@Dnmt3a!1.47!43.49!Dnmt3a;;chr11:84339016..84339044,-!p1@Lhx1!1.47!28.73!Lhx1;;chr9:91260594..91260612,-!p1@Zic1!1.47!28.33!Zic1;;chr1:165243379..165243402,-!p3@Prrx1!1.45!39.90!Prrx1;;chr17:86087592..86087615,-!p1@Six2!1.43!25.94!Six2;;chr12:74147689..74147711,-!p1@Six1!1.42!54.27!Six1;;chr3:99057269..99057306,+!p1@Tbx15!1.42!30.33!Tbx15;;chr13:56353536..56353542,-!p1@Neurog1!1.40!24.34!Neurog1;;chrX:58146612..58146615,-!p1@Sox3!1.40!23.94!Sox3;;chrX:108009761..108009788,+!p1@Pou3f4!1.39!23.54!Pou3f4;;chr13:53568104..53568156,-!p1@Msx2!1.38!33.52!Msx2;;chr2:79296783..79296801,-!p1@Neurod1!1.38!22.74!Neurod1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.37!27.93!Pou3f3;;chr8:87425854..87425891,+!p1@Klf1!1.37!22.35!Klf1;;chr10:119913310..119913366,-!p1@Hmga2!1.36!166.79!Hmga2;;chr2:71384802..71384815,-!p1@Dlx2!1.36!26.73!Dlx2;;chr2:146047829..146047847,+!p1@Insm1!1.35!38.31!Insm1;;chr1:165243591..165243625,-!p2@Prrx1!1.34!31.92!Prrx1;;chr7:53631837..53631850,+!p1@Myod1!1.34!20.75!Myod1;;chr10:86956396..86956411,-!p1@Ascl1!1.31!29.53!Ascl1;;chr14:49287186..49287225,-!p1@Otx2!1.31!19.55!Otx2;;chr2:31495237..31495243,+!p1@Prdm12!1.30!19.15!Prdm12;;chr15:102797288..102797302,+!p1@Hoxc10!1.29!18.36!Hoxc10;;chr12:54349410..54349461,+!p1@Npas3!1.28!21.55!Npas3;;chr13:99124189..99124205,+!p1@Foxd1!1.25!25.14!Foxd1;;chr14:104867201..104867258,-!p1@Pou4f1!1.24!23.14!Pou4f1;;chr9:71743854..71743909,-!p1@Tcf12!1.23!125.29!Tcf12;;chr9:91260616..91260653,-!p2@Zic1!1.23!15.96!Zic1;;chr1:19199236..19199258,+!p1@Tfap2b!1.23!15.96!Tfap2b;;chr7:144505957..144505972,-!p2@Ebf3!1.22!19.15!Ebf3;;chr5:38215819..38215823,-!p1@Msx1!1.21!39.10!Msx1;;chr15:103085660..103085681,-!p1@Nfe2!1.19!21.55!Nfe2;;chr13:55932591..55932622,-!p1@Pitx1!1.18!17.16!Pitx1;;chrX:55283799..55283813,+!p1@Zic3!1.18!13.97!Zic3;;chr10:102491405..102491416,-!p1@Alx1!1.16!13.57!Alx1;;chr2:28477452..28477483,-!p1@Gfi1b!1.15!16.36!Gfi1b;;chr12:30213247..30213333,+!p1@Myt1l!1.15!13.17!Myt1l;;chr15:76352677..76352737,-!p3@Scrt1!1.14!12.77!Scrt1;;chr2:74513125..74513143,+!p1@Hoxd12!1.14!12.77!Hoxd12;;chr1:136186574..136186592,+!p1@Myog!1.14!12.77!Myog;;chr12:3891753..3891801,+!p4@Dnmt3a!1.13!20.35!Dnmt3a;;chr13:72766250..72766273,+!p1@Irx2!1.13!19.15!Irx2;;chr1:78193687..78193692,-!p1@Pax3!1.13!12.37!Pax3;;chr5:148000254..148000260,+!p1@Gsx1!1.13!12.37!Gsx1;;chr13:40829137..40829205,-!p1@Tfap2a!1.12!13.57!Tfap2a;;chr7:147234982..147234988,-!p1@Msx3!1.11!11.97!Msx3;;chr11:96153767..96153822,+!p1@Hoxb6!1.10!17.96!Hoxb6;;chr12:37835120..37835133,+!p2@Meox2!1.10!16.76!Meox2;;chr5:140019843..140019858,+!p2@Uncx!1.10!11.57!Uncx;;chr6:52184901..52184959,-!p2@Hoxa10!1.10!11.57!Hoxa10;;chr2:147190725..147190747,+!p2@Pax1!1.10!11.57!Pax1;;chr7:144506077..144506128,-!p1@Ebf3!1.09!25.94!Ebf3;;chr1:173987720..173987729,-!p1@Nhlh1!1.09!11.17!Nhlh1;;chr13:15555670..15555771,+!p2@Gli3!1.08!28.33!Gli3;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!1.08!19.15!Zfhx3;;chr14:67853425..67853454,+!p1@Ebf2!1.08!15.56!Ebf2;;chr11:101755669..101755686,-!p1@Meox1!1.07!19.55!Meox1;;chr2:38206744..38206766,+!p1@Lhx2!1.07!13.17!Lhx2;;chr12:57796615..57796687,+!p1@Pax9!1.07!10.77!Pax9;;chr16:25801993..25802014,+!p1@Trp63!1.07!10.77!Trp63;;chr3:95032091..95032183,-!p1@Mllt11!1.06!89.38!Mllt11;;chr12:109242266..109242295,-!p1@Bcl11b!1.06!87.79!Bcl11b;;chr4:114732112..114732158,+!p1@Tal1!1.06!23.14!Tal1;;chr2:74549968..74549996,+!p1@Hoxd3!1.06!13.17!Hoxd3;;chr6:52190467..52190500,-!p1@Hoxa10!1.06!10.37!Hoxa10;;chr6:55631042..55631102,-!p1@Neurod6!1.06!10.37!Neurod6;;chr3:5218516..5218544,+!p2@Zfhx4!1.05!15.56!Zfhx4;;chr8:59799772..59799789,+!p1@Hand2!1.04!28.73!Hand2;;chr6:52176164..52176195,-!p1@Hoxa9!1.04!12.37!Hoxa9;;chr6:6832076..6832092,-!p1@Dlx5!1.04!11.57!Dlx5;;chr4:150503457..150503498,-!p3@Camta1!1.04!11.17!Camta1;;chr4:53792566..53792578,+!p1@Tal2!1.04!9.98!Tal2;;chr5:120881900..120881914,+!p1@Lhx5!1.04!9.98!Lhx5;;chr13:48758276..48758291,+!p1@Barx1!1.04!9.98!Barx1;;chr1:6720216..6720232,+!p1@St18!1.04!9.98!St18;;chr6:14851440..14851497,+!p2@Foxp2!1.03!23.94!Foxp2;;chr4:13670499..13670526,+!p2@Runx1t1!1.03!21.55!Runx1t1;;chr13:117099847..117099907,-!p1@Isl1!1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x5!0.34!1.20!Sox5;;chr5:75471615..75471622,+!p1@Gsx2!0.34!1.20!Gsx2;;chr5:67490474..67490494,-!p2@Phox2b!0.34!1.20!Phox2b;;chr6:70906450..70906454,+!p1@Foxi3!0.34!1.20!Foxi3;;chr6:52195747..52195762,-!p3@Hoxa11!0.34!1.20!Hoxa11;;chr6:6812988..6813002,+!p3@Dlx6!0.34!1.20!Dlx6;;chr5:24104540..24104584,-!p7@Smarcd3!0.34!1.20!Smarcd3;;chr6:52158693..52158704,-!p3@Hoxa6!0.34!1.20!Hoxa6;;chr7:144506051..144506062,-!p5@Ebf3!0.34!1.20!Ebf3;;chr7:144505906..144505913,-!p7@Ebf3!0.34!1.20!Ebf3;;chr7:144505942..144505949,-!p10@Ebf3!0.34!1.20!Ebf3;;chr5:120285130..120285141,+!p3@Tbx5!0.34!1.20!Tbx5;;chr2:168592636..168592651,-!p1@Sall4!0.34!1.20!Sall4;;chr1:140743964..140743976,-!p3@Lhx9!0.34!1.20!Lhx9;;chr2:168427068..168427115,-!p3@Nfatc2!0.34!1.20!Nfatc2;;chr1:57028594..57028604,-!p10@Satb2!0.34!1.20!Satb2;;chr1:179374820..179374831,+!p3@Zfp238!0.34!1.20!Zfp238;;chr1:42752559..42752566,+!p@chr1:42752559..42752566,+!0.34!1.20!Pou3f3;;chr2:151907110..151907126,+!p6@Scrt2!0.34!1.20!Scrt2;;chr1:167865149..167865167,-!p3@Pou2f1!0.34!1.20!Pou2f1;;chr19:55967803..55967834,+!p12@Tcf7l2!0.34!1.20!Tcf7l2;;chr2:180069423..180069434,-!p2@Gata5!0.34!1.20!Gata5;;chr2:61642631..61642684,+!p1@Tbr1!0.34!1.20!Tbr1;;chr1:42752654..42752665,+!p@chr1:42752654..42752665,+!0.34!1.20!Pou3f3;;chr19:55969887..55969904,+!p9@Tcf7l2!0.34!1.20!Tcf7l2;;chr1:57028157..57028173,-!p3@Satb2!0.34!1.20!Satb2;;chr19:55969946..55969973,+!p8@Tcf7l2!0.34!1.20!Tcf7l2;;chr19:46222859..46222876,-!p1@Pitx3!0.34!1.20!Pitx3;;chr18:11052516..11052525,+!p5@Gata6!0.34!1.20!Gata6;;chr17:86020468..86020504,+!p6@Six3!0.34!1.20!Six3;;chr18:77094894..77094905,+!p2@Skor2!0.34!1.20!Skor2;;chr16:25684232..25684285,+!p2@Trp63!0.34!1.20!Trp63;;chr17:26978409..26978442,-!p1@Nkx2-5!0.34!1.20!Nkx2-5;;chr4:135728473..135728494,+!p5@E2f2!0.34!1.20!E2f2;;chr3:17954392..17954407,+!p2@Bhlhe22!0.34!1.20!Bhlhe22;;chr2:71368815..71368836,+!p4@Dlx1!0.34!1.20!Dlx1;;chr4:13678514..13678539,+!p14@Runx1t1!0.34!1.20!Runx1t1;;chr4:150482353..150482386,-!p6@Camta1!0.34!1.20!Camta1;;chr4:44717308..44717321,-!p6@Pax5!0.34!1.20!Pax5;;chr2:71367979..71367993,+!p7@Dlx1!0.34!1.20!Dlx1;;chr4:97248389..97248402,+!p21@Nfia!0.34!1.20!Nfia;;chr4:84192360..84192376,-!p8@Bnc2!0.34!1.20!Bnc2;;chr3:130813254..130813263,+!p4@Lef1!0.34!1.20!Lef1;;chr3:102768047..102768060,-!p1@Nr1h5!0.34!1.20!Nr1h5;;chr10:19076194..19076197,+!p2@Olig3!0.34!1.20!Olig3;;chr10:119913301..119913302,-!p11@Hmga2!0.34!1.20!Hmga2;;chr11:96160068..96160084,+!p6@Hoxb6!0.34!1.20!Hoxb6;;chr11:85703483..85703508,+!p2@Tbx4!0.34!1.20!Tbx4;;chr11:96132456..96132467,+!p4@Hoxb9!0.34!1.20!Hoxb9;;chr9:91256933..91256954,+!p4@Zic4!0.34!1.20!Zic4;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.34!1.20!Foxl1;;chr9:98855944..98855971,+!p4@Foxl2!0.34!1.20!Foxl2;;chr8:81551868..81551877,+!p13@Zfp827!0.34!1.20!Zfp827;;chr9:99776617..99776631,-!p2@Sox14!0.34!1.20!Sox14;;chr8:12395874..12395885,+!p2@Sox1!0.34!1.20!Sox1;;chr6:64992569..64992656,+!p1@Smarcad1!0.33!57.06!Smarcad1;;chr17:57074836..57074927,-!p1@Mllt1!0.33!51.87!Mllt1;;chr9:22112085..22112138,-!p1@Zfp810!0.33!23.94!Zfp810;;chr2:165213745..165213815,-!p1@Zfp334!0.33!16.76!Zfp334;;chr7:13063668..13063721,+!p1@Zfp606!0.33!12.77!Zfp606;;chr2:162880327..162880385,+!p2@Mybl2!0.33!12.37!Mybl2;;chr7:56136362..56136400,-!p1@E2f8!0.33!11.97!E2f8;;chr12:77470507..77470572,-!p2@Zbtb25!0.33!6.78!Zbtb25;;chr18:69504123..69504155,+!p5@Tcf4!0.33!6.38!Tcf4;;chr19:53384910..53384937,+!p3@Mxi1!0.33!4.79!Mxi1;;chr18:55152179..55152194,-!p5@Zfp608!0.33!4.79!Zfp608;;chr9:63869751..63869767,-!p1@Smad6!0.33!4.39!Smad6;;chr18:55150248..55150308,-!p6@Zfp608!0.33!3.99!Zfp608;;chr16:4559721..4559747,-!p3@Tfap4!0.33!3.59!Tfap4;; | |expression_enrichment_score=chr12:34642510..34642530,+!p1@Twist1!1.92!248.19!Twist1;;chr3:101814061..101814094,+!p1@Nhlh2!1.77!57.86!Nhlh2;;chr1:140739014..140739032,-!p1@Lhx9!1.74!68.23!Lhx9;;chr3:127336052..127336058,+!p1@Neurog2!1.70!49.08!Neurog2;;chr7:56892217..56892221,-!p1@Dbx1!1.61!39.90!Dbx1;;chr12:28027561..28027591,-!p1@Sox11!1.59!239.02!Sox11;;chr10:119914001..119914078,-!p4@Hmga2!1.55!46.29!Hmga2;;chr2:151907546..151907561,+!p1@Scrt2!1.55!34.32!Scrt2;;chr4:154335024..154335039,+!p1@Hes5!1.53!39.50!Hes5;;chr10:119913278..119913298,-!p2@Hmga2!1.52!69.83!Hmga2;;chr10:119913546..119913583,-!p3@Hmga2!1.52!66.24!Hmga2;;chr11:96143666..96143725,+!p1@Hoxb8!1.52!36.71!Hoxb8;;chr15:102828658..102828678,+!p1@Hoxc6!1.50!30.33!Hoxc6;;chr2:38206580..38206600,+!p2@Lhx2!1.49!36.71!Lhx2;;chr12:3891810..3891829,+!p2@Dnmt3a!1.47!43.49!Dnmt3a;;chr11:84339016..84339044,-!p1@Lhx1!1.47!28.73!Lhx1;;chr9:91260594..91260612,-!p1@Zic1!1.47!28.33!Zic1;;chr1:165243379..165243402,-!p3@Prrx1!1.45!39.90!Prrx1;;chr17:86087592..86087615,-!p1@Six2!1.43!25.94!Six2;;chr12:74147689..74147711,-!p1@Six1!1.42!54.27!Six1;;chr3:99057269..99057306,+!p1@Tbx15!1.42!30.33!Tbx15;;chr13:56353536..56353542,-!p1@Neurog1!1.40!24.34!Neurog1;;chrX:58146612..58146615,-!p1@Sox3!1.40!23.94!Sox3;;chrX:108009761..108009788,+!p1@Pou3f4!1.39!23.54!Pou3f4;;chr13:53568104..53568156,-!p1@Msx2!1.38!33.52!Msx2;;chr2:79296783..79296801,-!p1@Neurod1!1.38!22.74!Neurod1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.37!27.93!Pou3f3;;chr8:87425854..87425891,+!p1@Klf1!1.37!22.35!Klf1;;chr10:119913310..119913366,-!p1@Hmga2!1.36!166.79!Hmga2;;chr2:71384802..71384815,-!p1@Dlx2!1.36!26.73!Dlx2;;chr2:146047829..146047847,+!p1@Insm1!1.35!38.31!Insm1;;chr1:165243591..165243625,-!p2@Prrx1!1.34!31.92!Prrx1;;chr7:53631837..53631850,+!p1@Myod1!1.34!20.75!Myod1;;chr10:86956396..86956411,-!p1@Ascl1!1.31!29.53!Ascl1;;chr14:49287186..49287225,-!p1@Otx2!1.31!19.55!Otx2;;chr2:31495237..31495243,+!p1@Prdm12!1.30!19.15!Prdm12;;chr15:102797288..102797302,+!p1@Hoxc10!1.29!18.36!Hoxc10;;chr12:54349410..54349461,+!p1@Npas3!1.28!21.55!Npas3;;chr13:99124189..99124205,+!p1@Foxd1!1.25!25.14!Foxd1;;chr14:104867201..104867258,-!p1@Pou4f1!1.24!23.14!Pou4f1;;chr9:71743854..71743909,-!p1@Tcf12!1.23!125.29!Tcf12;;chr9:91260616..91260653,-!p2@Zic1!1.23!15.96!Zic1;;chr1:19199236..19199258,+!p1@Tfap2b!1.23!15.96!Tfap2b;;chr7:144505957..144505972,-!p2@Ebf3!1.22!19.15!Ebf3;;chr5:38215819..38215823,-!p1@Msx1!1.21!39.10!Msx1;;chr15:103085660..103085681,-!p1@Nfe2!1.19!21.55!Nfe2;;chr13:55932591..55932622,-!p1@Pitx1!1.18!17.16!Pitx1;;chrX:55283799..55283813,+!p1@Zic3!1.18!13.97!Zic3;;chr10:102491405..102491416,-!p1@Alx1!1.16!13.57!Alx1;;chr2:28477452..28477483,-!p1@Gfi1b!1.15!16.36!Gfi1b;;chr12:30213247..30213333,+!p1@Myt1l!1.15!13.17!Myt1l;;chr15:76352677..76352737,-!p3@Scrt1!1.14!12.77!Scrt1;;chr2:74513125..74513143,+!p1@Hoxd12!1.14!12.77!Hoxd12;;chr1:136186574..136186592,+!p1@Myog!1.14!12.77!Myog;;chr12:3891753..3891801,+!p4@Dnmt3a!1.13!20.35!Dnmt3a;;chr13:72766250..72766273,+!p1@Irx2!1.13!19.15!Irx2;;chr1:78193687..78193692,-!p1@Pax3!1.13!12.37!Pax3;;chr5:148000254..148000260,+!p1@Gsx1!1.13!12.37!Gsx1;;chr13:40829137..40829205,-!p1@Tfap2a!1.12!13.57!Tfap2a;;chr7:147234982..147234988,-!p1@Msx3!1.11!11.97!Msx3;;chr11:96153767..96153822,+!p1@Hoxb6!1.10!17.96!Hoxb6;;chr12:37835120..37835133,+!p2@Meox2!1.10!16.76!Meox2;;chr5:140019843..140019858,+!p2@Uncx!1.10!11.57!Uncx;;chr6:52184901..52184959,-!p2@Hoxa10!1.10!11.57!Hoxa10;;chr2:147190725..147190747,+!p2@Pax1!1.10!11.57!Pax1;;chr7:144506077..144506128,-!p1@Ebf3!1.09!25.94!Ebf3;;chr1:173987720..173987729,-!p1@Nhlh1!1.09!11.17!Nhlh1;;chr13:15555670..15555771,+!p2@Gli3!1.08!28.33!Gli3;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!1.08!19.15!Zfhx3;;chr14:67853425..67853454,+!p1@Ebf2!1.08!15.56!Ebf2;;chr11:101755669..101755686,-!p1@Meox1!1.07!19.55!Meox1;;chr2:38206744..38206766,+!p1@Lhx2!1.07!13.17!Lhx2;;chr12:57796615..57796687,+!p1@Pax9!1.07!10.77!Pax9;;chr16:25801993..25802014,+!p1@Trp63!1.07!10.77!Trp63;;chr3:95032091..95032183,-!p1@Mllt11!1.06!89.38!Mllt11;;chr12:109242266..109242295,-!p1@Bcl11b!1.06!87.79!Bcl11b;;chr4:114732112..114732158,+!p1@Tal1!1.06!23.14!Tal1;;chr2:74549968..74549996,+!p1@Hoxd3!1.06!13.17!Hoxd3;;chr6:52190467..52190500,-!p1@Hoxa10!1.06!10.37!Hoxa10;;chr6:55631042..55631102,-!p1@Neurod6!1.06!10.37!Neurod6;;chr3:5218516..5218544,+!p2@Zfhx4!1.05!15.56!Zfhx4;;chr8:59799772..59799789,+!p1@Hand2!1.04!28.73!Hand2;;chr6:52176164..52176195,-!p1@Hoxa9!1.04!12.37!Hoxa9;;chr6:6832076..6832092,-!p1@Dlx5!1.04!11.57!Dlx5;;chr4:150503457..150503498,-!p3@Camta1!1.04!11.17!Camta1;;chr4:53792566..53792578,+!p1@Tal2!1.04!9.98!Tal2;;chr5:120881900..120881914,+!p1@Lhx5!1.04!9.98!Lhx5;;chr13:48758276..48758291,+!p1@Barx1!1.04!9.98!Barx1;;chr1:6720216..6720232,+!p1@St18!1.04!9.98!St18;;chr6:14851440..14851497,+!p2@Foxp2!1.03!23.94!Foxp2;;chr4:13670499..13670526,+!p2@Runx1t1!1.03!21.55!Runx1t1;;chr13:117099847..117099907,-!p1@Isl1!1.03!17.96!Isl1;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!1.02!16.76!Zfhx3;;chr10:119913792..119913820,-!p5@Hmga2!1.02!16.36!Hmga2;;chrX:7544943..7545001,-!p1@Gata1!1.02!9.58!Gata1;;chr15:76353005..76353021,-!p2@Scrt1!1.02!9.58!Scrt1;;chr13:72766279..72766296,+!p2@Irx2!1.01!13.97!Irx2;;chr15:76352832..76352900,-!p1@Scrt1!1.01!9.18!Scrt1;;chr19:55968967..55968991,+!p7@Tcf7l2!1.01!9.18!Tcf7l2;;chr10:12810631..12810649,+!p1@Plagl1!1.00!240.21!Plagl1;;chr14:67853457..67853482,+!p2@Ebf2!1.00!12.77!Ebf2;;chr19:59533221..59533271,+!p1@Emx2!1.00!11.17!Emx2;;chr15:102087737..102087801,-!p3@Rarg!0.99!14.76!Rarg;;chr2:30700788..30700824,+!p2@Prrx2!0.99!13.57!Prrx2;;chr7:30088977..30089002,+!p2@Dpf1!0.99!12.37!Dpf1;;chr2:147190749..147190769,+!p1@Pax1!0.99!8.78!Pax1;;chr4:54957910..54957954,+!p2@Zfp462!0.97!25.54!Zfp462;;chr6:52163319..52163342,-!p1@Hoxa3!0.97!12.37!Hoxa3;;chr13:44936126..44936164,+!p6@Jarid2!0.97!9.58!Jarid2;;chr11:96160360..96160397,+!p3@Hoxb6!0.97!8.38!Hoxb6;;chr1:91827756..91827773,-!p1@Gbx2!0.97!8.38!Gbx2;;chr14:56443806..56443848,+!p1@Nfatc4!0.96!16.76!Nfatc4;;chr7:116154364..116154444,+!p1@Tub!0.96!14.36!Tub;;chr2:65683890..65683907,+!p1@Csrnp3!0.95!15.56!Csrnp3;;chr3:130813736..130813752,+!p3@Lef1!0.95!11.17!Lef1;;chrX:90531838..90531861,+!p1@Arx!0.95!9.98!Arx;;chr11:21901608..21901634,-!p1@Otx1!0.95!7.98!Otx1;;chr10:129717274..129717298,-!p1@Neurod4!0.95!7.98!Neurod4;;chr3:66785857..66785873,-!p1@Shox2!0.95!7.98!Shox2;;chrX:108009734..108009752,+!p2@Pou3f4!0.95!7.98!Pou3f4;;chr8:12395603..12395621,+!p1@Sox1!0.95!7.98!Sox1;;chr17:48061584..48061601,-!p2@Foxp4!0.94!52.27!Foxp4;;chr15:76352740..76352781,-!p5@Scrt1!0.93!7.58!Scrt1;;chr14:118636238..118636257,-!p2@Sox21!0.93!7.58!Sox21;;chr1:136186545..136186554,+!p2@Myog!0.93!7.58!Myog;;chr9:74709695..74709722,+!p1@Onecut1!0.93!7.58!Onecut1;;chr10:84218895..84218909,+!p1@Rfx4!0.93!7.58!Rfx4;;chr11:96132637..96132652,+!p1@Hoxb9!0.93!7.58!Hoxb9;;chr8:90483433..90483457,-!p2@Zfp423!0.92!9.98!Zfp423;;chr6:6831928..6831949,-!p3@Dlx5!0.91!7.18!Dlx5;;chr2:181498020..181498040,+!p5@Myt1!0.91!7.18!Myt1;;chr2:71367871..71367898,+!p1@Dlx1!0.91!7.18!Dlx1;;chr19:7342725..7342784,+!p1@Rcor2!0.90!29.53!Rcor2;;chr11:23978353..23978379,+!p10@Bcl11a!0.90!8.38!Bcl11a;;chr17:37139472..37139514,+!p1@Zfp57!0.89!48.28!Zfp57;;chr8:111227354..111227401,+!p@chr8:111227354..111227401,+!0.89!9.18!Zfhx3;;chr13:31898767..31898785,+!p4@Foxc1!0.89!8.38!Foxc1;;chr9:24578720..24578735,-!p1@Tbx20!0.89!6.78!Tbx20;;chr9:55388997..55389016,+!p1@Isl2!0.89!6.78!Isl2;;chr6:52158644..52158677,-!p2@Hoxa6!0.89!6.78!Hoxa6;;chr5:140019865..140019886,+!p1@Uncx!0.89!6.78!Uncx;;chr13:31717548..31717596,+!p1@Foxf2!0.88!13.57!Foxf2;;chr3:34548909..34548927,+!p1@Sox2!0.87!11.17!Sox2;;chr15:50721942..50721987,-!p13@Trps1!0.87!7.58!Trps1;;chr17:44951553..44951586,-!p2@Runx2!0.87!7.18!Runx2;;chr16:91225808..91225824,+!p1@Olig2!0.87!6.38!Olig2;;chrX:55284180..55284195,+!p2@Zic3!0.87!6.38!Zic3;;chr10:84218800..84218829,+!p2@Rfx4!0.87!6.38!Rfx4;;chr11:21901587..21901604,-!p2@Otx1!0.87!6.38!Otx1;;chr11:96160426..96160443,+!p2@Hoxb6!0.87!6.38!Hoxb6;;chr3:99057256..99057268,+!p3@Tbx15!0.87!6.38!Tbx15;;chr5:106887474..106887489,-!p1@Barhl2!0.87!6.38!Barhl2;;chr13:72101178..72101203,-!p1@Irx1!0.86!9.98!Irx1;;chr6:52167459..52167492,-!p1@Hoxa7!0.86!7.58!Hoxa7;;chr11:112643496..112643562,+!p1@Sox9!0.85!239.02!Sox9;;chr15:75447162..75447217,+!p2@Zfp41!0.85!18.75!Zfp41;;chr8:94325847..94325869,-!p3@Irx3!0.85!9.98!Irx3;;chr18:64499706..64499721,+!p2@Onecut2!0.85!8.78!Onecut2;;chr3:130813200..130813252,+!p1@Lef1!0.84!28.33!Lef1;;chr3:5218629..5218684,+!p1@Zfhx4!0.84!20.35!Zfhx4;;chr12:37835141..37835194,+!p1@Meox2!0.84!19.15!Meox2;;chr2:152223586..152223604,-!p5@Sox12!0.84!8.78!Sox12;;chr1:19199151..19199170,+!p3@Tfap2b!0.84!5.99!Tfap2b;;chr2:93482464..93482491,+!p1@Alx4!0.84!5.99!Alx4;;chr7:6649134..6649167,-!p1@Zim1!0.83!33.52!Zim1;;chr2:152223783..152223812,-!p4@Sox12!0.83!13.97!Sox12;;chr9:87626083..87626108,-!p1@Tbx18!0.83!13.17!Tbx18;;chr3:5218546..5218561,+!p4@Zfhx4!0.83!9.18!Zfhx4;;chr14:56443781..56443800,+!p3@Nfatc4!0.83!7.58!Nfatc4;;chr14:67853632..67853674,+!p3@Ebf2!0.83!7.18!Ebf2;;chr13:40826150..40826167,-!p3@Tfap2a!0.83!6.38!Tfap2a;;chr8:111227641..111227672,+!p@chr8:111227641..111227672,+!0.82!15.96!Zfhx3;;chr11:3189683..3189744,+!p2@Patz1!0.82!11.97!Patz1;;chr7:30092993..30093076,+!p1@Dpf1!0.82!9.98!Dpf1;;chr13:72101161..72101177,-!p2@Irx1!0.82!7.98!Irx1;;chr11:94981424..94981439,+!p1@Dlx3!0.82!6.38!Dlx3;;chr11:96132767..96132796,+!p2@Hoxb9!0.82!5.59!Hoxb9;;chr11:98190918..98190951,-!p1@Neurod2!0.82!5.59!Neurod2;;chr11:85699862..85699920,+!p1@Tbx4!0.82!5.59!Tbx4;;chr13:44936077..44936096,+!p9@Jarid2!0.82!5.59!Jarid2;;chr15:102820946..102820961,+!p3@Hoxc8!0.82!5.59!Hoxc8;;chr2:74583776..74583815,+!p3@Hoxd3!0.82!5.59!Hoxd3;;chr2:74529970..74529997,+!p1@Hoxd10!0.82!5.59!Hoxd10;;chr6:85137520..85137563,+!p1@Emx1!0.82!5.59!Emx1;;chr1:19199221..19199234,+!p6@Tfap2b!0.82!5.59!Tfap2b;;chr1: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x5!0.34!1.20!Sox5;;chr5:75471615..75471622,+!p1@Gsx2!0.34!1.20!Gsx2;;chr5:67490474..67490494,-!p2@Phox2b!0.34!1.20!Phox2b;;chr6:70906450..70906454,+!p1@Foxi3!0.34!1.20!Foxi3;;chr6:52195747..52195762,-!p3@Hoxa11!0.34!1.20!Hoxa11;;chr6:6812988..6813002,+!p3@Dlx6!0.34!1.20!Dlx6;;chr5:24104540..24104584,-!p7@Smarcd3!0.34!1.20!Smarcd3;;chr6:52158693..52158704,-!p3@Hoxa6!0.34!1.20!Hoxa6;;chr7:144506051..144506062,-!p5@Ebf3!0.34!1.20!Ebf3;;chr7:144505906..144505913,-!p7@Ebf3!0.34!1.20!Ebf3;;chr7:144505942..144505949,-!p10@Ebf3!0.34!1.20!Ebf3;;chr5:120285130..120285141,+!p3@Tbx5!0.34!1.20!Tbx5;;chr2:168592636..168592651,-!p1@Sall4!0.34!1.20!Sall4;;chr1:140743964..140743976,-!p3@Lhx9!0.34!1.20!Lhx9;;chr2:168427068..168427115,-!p3@Nfatc2!0.34!1.20!Nfatc2;;chr1:57028594..57028604,-!p10@Satb2!0.34!1.20!Satb2;;chr1:179374820..179374831,+!p3@Zfp238!0.34!1.20!Zfp238;;chr1:42752559..42752566,+!p@chr1:42752559..42752566,+!0.34!1.20!Pou3f3;;chr2:151907110..151907126,+!p6@Scrt2!0.34!1.20!Scrt2;;chr1:167865149..167865167,-!p3@Pou2f1!0.34!1.20!Pou2f1;;chr19:55967803..55967834,+!p12@Tcf7l2!0.34!1.20!Tcf7l2;;chr2:180069423..180069434,-!p2@Gata5!0.34!1.20!Gata5;;chr2:61642631..61642684,+!p1@Tbr1!0.34!1.20!Tbr1;;chr1:42752654..42752665,+!p@chr1:42752654..42752665,+!0.34!1.20!Pou3f3;;chr19:55969887..55969904,+!p9@Tcf7l2!0.34!1.20!Tcf7l2;;chr1:57028157..57028173,-!p3@Satb2!0.34!1.20!Satb2;;chr19:55969946..55969973,+!p8@Tcf7l2!0.34!1.20!Tcf7l2;;chr19:46222859..46222876,-!p1@Pitx3!0.34!1.20!Pitx3;;chr18:11052516..11052525,+!p5@Gata6!0.34!1.20!Gata6;;chr17:86020468..86020504,+!p6@Six3!0.34!1.20!Six3;;chr18:77094894..77094905,+!p2@Skor2!0.34!1.20!Skor2;;chr16:25684232..25684285,+!p2@Trp63!0.34!1.20!Trp63;;chr17:26978409..26978442,-!p1@Nkx2-5!0.34!1.20!Nkx2-5;;chr4:135728473..135728494,+!p5@E2f2!0.34!1.20!E2f2;;chr3:17954392..17954407,+!p2@Bhlhe22!0.34!1.20!Bhlhe22;;chr2:71368815..71368836,+!p4@Dlx1!0.34!1.20!Dlx1;;chr4:13678514..13678539,+!p14@Runx1t1!0.34!1.20!Runx1t1;;chr4:150482353..150482386,-!p6@Camta1!0.34!1.20!Camta1;;chr4:44717308..44717321,-!p6@Pax5!0.34!1.20!Pax5;;chr2:71367979..71367993,+!p7@Dlx1!0.34!1.20!Dlx1;;chr4:97248389..97248402,+!p21@Nfia!0.34!1.20!Nfia;;chr4:84192360..84192376,-!p8@Bnc2!0.34!1.20!Bnc2;;chr3:130813254..130813263,+!p4@Lef1!0.34!1.20!Lef1;;chr3:102768047..102768060,-!p1@Nr1h5!0.34!1.20!Nr1h5;;chr10:19076194..19076197,+!p2@Olig3!0.34!1.20!Olig3;;chr10:119913301..119913302,-!p11@Hmga2!0.34!1.20!Hmga2;;chr11:96160068..96160084,+!p6@Hoxb6!0.34!1.20!Hoxb6;;chr11:85703483..85703508,+!p2@Tbx4!0.34!1.20!Tbx4;;chr11:96132456..96132467,+!p4@Hoxb9!0.34!1.20!Hoxb9;;chr9:91256933..91256954,+!p4@Zic4!0.34!1.20!Zic4;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.34!1.20!Foxl1;;chr9:98855944..98855971,+!p4@Foxl2!0.34!1.20!Foxl2;;chr8:81551868..81551877,+!p13@Zfp827!0.34!1.20!Zfp827;;chr9:99776617..99776631,-!p2@Sox14!0.34!1.20!Sox14;;chr8:12395874..12395885,+!p2@Sox1!0.34!1.20!Sox1;;chr6:64992569..64992656,+!p1@Smarcad1!0.33!57.06!Smarcad1;;chr17:57074836..57074927,-!p1@Mllt1!0.33!51.87!Mllt1;;chr9:22112085..22112138,-!p1@Zfp810!0.33!23.94!Zfp810;;chr2:165213745..165213815,-!p1@Zfp334!0.33!16.76!Zfp334;;chr7:13063668..13063721,+!p1@Zfp606!0.33!12.77!Zfp606;;chr2:162880327..162880385,+!p2@Mybl2!0.33!12.37!Mybl2;;chr7:56136362..56136400,-!p1@E2f8!0.33!11.97!E2f8;;chr12:77470507..77470572,-!p2@Zbtb25!0.33!6.78!Zbtb25;;chr18:69504123..69504155,+!p5@Tcf4!0.33!6.38!Tcf4;;chr19:53384910..53384937,+!p3@Mxi1!0.33!4.79!Mxi1;;chr18:55152179..55152194,-!p5@Zfp608!0.33!4.79!Zfp608;;chr9:63869751..63869767,-!p1@Smad6!0.33!4.39!Smad6;;chr18:55150248..55150308,-!p6@Zfp608!0.33!3.99!Zfp608;;chr16:4559721..4559747,-!p3@Tfap4!0.33!3.59!Tfap4;; | ||
|ffid_belonging_in_development=FF:0000294 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 40: | Line 44: | ||
|is_a=EFO:0002091;;FF:0011434 | |is_a=EFO:0002091;;FF:0011434 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10587 | |||
|library_id_phase_based=2:CNhs10587 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;857 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;857 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E12.CNhs10587.857-27C9.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E12.CNhs10587.857-27C9.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E12.CNhs10587.857-27C9.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E12.CNhs10587.857-27C9.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E12.CNhs10587.857-27C9.mm9.nobarcode.rdna.fa.gz | |||
|name=whole body, embryo E12 | |name=whole body, embryo E12 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10587,LSID653,release008,COMPLETED | |profile_hcage=CNhs10587,LSID653,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.0893650698915935,0,0,0,0,0,0.047372616239112,0,0,0,0,0.494663537695176,0,0,0,0,0,0,0.222427981581372,0,0.0729127179624205,0,0,0,0,0,0,0,0,0,0,0,-0.216577985020223,0,0,0,0,0.0189169080960595,-0.136410007533406,0.092289995944834,-0.141801605977235,0.527978765274088,0.548776050608688,0.145825435924841,0,0,0,0,0,0,0,0,0,0,0,0.0798198883614002,0.145825435924841,0,0,0,-0.0428469550828748,0,-0.00329571383706642,0,0,0,-0.00212885112103935,-0.310650657339386,-0.012265606846242,0.0414487001893886,0,0,0.0935709832864151,0,0.145825435924841,0,0.064266014784873,-0.0628340768640038,0.135615352061721,-0.0788315948399074,0,0,0,0,0,0,-0.122469471105573,-0.124488549279456,-0.196890284268979,0,0,0,0,0 | |||
|rna_box=27 | |rna_box=27 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 76: | ||
|rna_weight_ug= | |rna_weight_ug= | ||
|sample_age= | |sample_age= | ||
|sample_category=developmental | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 80: | Line 97: | ||
|top_motifs=SOX2:2.35028826135;VSX1,2:2.26436560215;MZF1:2.15172554045;SOX5:2.00388378697;TFDP1:1.98704448322;PRRX1,2:1.86848715597;NFY{A,B,C}:1.80914405071;RREB1:1.80884139896;SOX{8,9,10}:1.78907252152;STAT5{A,B}:1.57810825623;NANOG:1.57096179571;SOX17:1.55203349387;GFI1:1.54741528305;PATZ1:1.54707072956;ZNF143:1.54208254253;LEF1_TCF7_TCF7L1,2:1.52383517818;BREu{core}:1.48021672573;ZNF384:1.41440298035;PBX1:1.40868300032;MED-1{core}:1.35814975129;GFI1B:1.30599393945;MAZ:1.29058052263;FOXD3:1.24628905516;EP300:1.2030761263;ZNF238:1.18357721394;SMAD1..7,9:1.1683047046;AHR_ARNT_ARNT2:1.15457893164;NKX2-1,4:1.14950448401;PRDM1:1.13625109458;PAX6:1.12880604729;NKX2-3_NKX2-5:1.12227264879;GZF1:1.12173937012;NANOG{mouse}:1.10898861519;TOPORS:1.10440989557;OCT4_SOX2{dimer}:1.09097675228;TFAP2B:1.04978645019;NHLH1,2:1.04179934417;HIC1:0.978096717173;GTF2I:0.972758249008;GATA6:0.963990783075;ZBTB6:0.938795211974;LHX3,4:0.929033140535;MTE{core}:0.92494299914;NRF1:0.911262454636;GATA4:0.898656865488;POU5F1:0.883017101707;DBP:0.851010170161;EN1,2:0.848772378411;ONECUT1,2:0.847169664743;FOX{I1,J2}:0.840244320669;CUX2:0.837862147609;PITX1..3:0.829555916657;HBP1_HMGB_SSRP1_UBTF:0.814862212076;TGIF1:0.809735070677;E2F1..5:0.803801161052;RBPJ:0.785351553409;EGR1..3:0.755466453255;ZFP161:0.742699031179;HSF1,2:0.726401002236;KLF4:0.724953530196;TFAP2{A,C}:0.690865716855;TFAP4:0.682904582991;HMX1:0.656056859061;ATF2:0.63235385513;REST:0.557348005675;HOX{A4,D4}:0.557124816547;POU6F1:0.553745143528;ZNF423:0.525268063944;UFEwm:0.516852048378;PAX5:0.513793404362;IKZF2:0.509032455867;XCPE1{core}:0.495878711709;GTF2A1,2:0.494867011036;NKX3-2:0.471028503403;RXR{A,B,G}:0.45893568242;NKX3-1:0.458372476703;HOXA9_MEIS1:0.448308517775;POU1F1:0.447796133462;FOXN1:0.434187449908;MTF1:0.423837587281;MYBL2:0.420511368793;JUN:0.399624878255;RFX1:0.387041676283;POU3F1..4:0.372384808527;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.363878400066;MYFfamily:0.361972964295;HMGA1,2:0.353039598792;ZIC1..3:0.32292410946;SP1:0.316885986003;TLX2:0.304172673464;ZNF148:0.282941030614;CRX:0.27717796619;TEAD1:0.275187468777;ELK1,4_GABP{A,B1}:0.269495131497;PAX1,9:0.242839460053;YY1:0.24232735943;PDX1:0.241769509207;ADNP_IRX_SIX_ZHX:0.233840419879;TBX4,5:0.227459260483;IKZF1:0.143390905176;RFX2..5_RFXANK_RFXAP:0.138592430216;HIF1A:0.102201702305;MAFB:0.0822781937148;POU2F1..3:0.0787554512506;ZBTB16:0.066234763749;MYB:0.065057096686;PAX2:0.0562380181026;CREB1:0.0485470604921;TAL1_TCF{3,4,12}:0.040686755135;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0334415339362;SRF:0.012273380424;HOX{A5,B5}:-0.0154646722239;FOX{F1,F2,J1}:-0.019825317589;NKX6-1,2:-0.0287652089737;CDC5L:-0.0369355293345;TFCP2:-0.0411572357347;NR6A1:-0.0788020833359;ATF5_CREB3:-0.0864720922886;FOXP3:-0.0898535931626;ATF6:-0.0923034528293;T:-0.101727388649;bHLH_family:-0.11515642323;GCM1,2:-0.126989364245;RORA:-0.135735437952;NFIX:-0.140077156422;FOXM1:-0.144859669785;NR3C1:-0.148295662703;PAX8:-0.150567095547;AIRE:-0.176487728148;TBP:-0.188050155814;MEF2{A,B,C,D}:-0.206591651668;STAT1,3:-0.21384824949;ATF4:-0.226262642808;NR1H4:-0.230721810345;BPTF:-0.243545277494;FOXA2:-0.261970034204;SPIB:-0.27153925859;LMO2:-0.277734987799;HNF1A:-0.288496180656;RUNX1..3:-0.291638175706;SPI1:-0.305139972704;ELF1,2,4:-0.318849083563;SNAI1..3:-0.32581541097;TLX1..3_NFIC{dimer}:-0.354937385136;ESR1:-0.362049198415;HES1:-0.3800192242;FOXQ1:-0.387342495372;EVI1:-0.393571539208;NFE2L1:-0.394073888588;CDX1,2,4:-0.394197213413;GLI1..3:-0.394955544456;NFATC1..3:-0.412209584955;MYOD1:-0.418921182059;HNF4A_NR2F1,2:-0.439130214824;FOXP1:-0.445586811672;PAX4:-0.513573484667;DMAP1_NCOR{1,2}_SMARC:-0.515339401212;ARID5B:-0.553197698276;AR:-0.587892223997;FOXL1:-0.594296991408;SREBF1,2:-0.618658725962;NFKB1_REL_RELA:-0.618661118549;HLF:-0.684150309695;ETS1,2:-0.691997673333;NR5A1,2:-0.695447877329;TP53:-0.700955939406;NFE2:-0.710755267568;NFIL3:-0.750800784101;IRF7:-0.765611374702;EBF1:-0.776865481805;ZEB1:-0.805493200162;SPZ1:-0.805525949269;RXRA_VDR{dimer}:-0.846329831579;ALX1:-0.863467592596;FOS_FOS{B,L1}_JUN{B,D}:-0.876585680567;NFE2L2:-0.927305456141;FOX{D1,D2}:-1.01807471943;IRF1,2:-1.03407025596;HAND1,2:-1.05374522184;TEF:-1.07867794953;BACH2:-1.0834644962;FOSL2:-1.10902583824;CEBPA,B_DDIT3:-1.1374238384;ESRRA:-1.13852257154;ALX4:-1.15707030341;STAT2,4,6:-1.24836378519;PPARG:-1.25833162184;FOXO1,3,4:-1.43421773846;NKX2-2,8:-1.66310194204 | |top_motifs=SOX2:2.35028826135;VSX1,2:2.26436560215;MZF1:2.15172554045;SOX5:2.00388378697;TFDP1:1.98704448322;PRRX1,2:1.86848715597;NFY{A,B,C}:1.80914405071;RREB1:1.80884139896;SOX{8,9,10}:1.78907252152;STAT5{A,B}:1.57810825623;NANOG:1.57096179571;SOX17:1.55203349387;GFI1:1.54741528305;PATZ1:1.54707072956;ZNF143:1.54208254253;LEF1_TCF7_TCF7L1,2:1.52383517818;BREu{core}:1.48021672573;ZNF384:1.41440298035;PBX1:1.40868300032;MED-1{core}:1.35814975129;GFI1B:1.30599393945;MAZ:1.29058052263;FOXD3:1.24628905516;EP300:1.2030761263;ZNF238:1.18357721394;SMAD1..7,9:1.1683047046;AHR_ARNT_ARNT2:1.15457893164;NKX2-1,4:1.14950448401;PRDM1:1.13625109458;PAX6:1.12880604729;NKX2-3_NKX2-5:1.12227264879;GZF1:1.12173937012;NANOG{mouse}:1.10898861519;TOPORS:1.10440989557;OCT4_SOX2{dimer}:1.09097675228;TFAP2B:1.04978645019;NHLH1,2:1.04179934417;HIC1:0.978096717173;GTF2I:0.972758249008;GATA6:0.963990783075;ZBTB6:0.938795211974;LHX3,4:0.929033140535;MTE{core}:0.92494299914;NRF1:0.911262454636;GATA4:0.898656865488;POU5F1:0.883017101707;DBP:0.851010170161;EN1,2:0.848772378411;ONECUT1,2:0.847169664743;FOX{I1,J2}:0.840244320669;CUX2:0.837862147609;PITX1..3:0.829555916657;HBP1_HMGB_SSRP1_UBTF:0.814862212076;TGIF1:0.809735070677;E2F1..5:0.803801161052;RBPJ:0.785351553409;EGR1..3:0.755466453255;ZFP161:0.742699031179;HSF1,2:0.726401002236;KLF4:0.724953530196;TFAP2{A,C}:0.690865716855;TFAP4:0.682904582991;HMX1:0.656056859061;ATF2:0.63235385513;REST:0.557348005675;HOX{A4,D4}:0.557124816547;POU6F1:0.553745143528;ZNF423:0.525268063944;UFEwm:0.516852048378;PAX5:0.513793404362;IKZF2:0.509032455867;XCPE1{core}:0.495878711709;GTF2A1,2:0.494867011036;NKX3-2:0.471028503403;RXR{A,B,G}:0.45893568242;NKX3-1:0.458372476703;HOXA9_MEIS1:0.448308517775;POU1F1:0.447796133462;FOXN1:0.434187449908;MTF1:0.423837587281;MYBL2:0.420511368793;JUN:0.399624878255;RFX1:0.387041676283;POU3F1..4:0.372384808527;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.363878400066;MYFfamily:0.361972964295;HMGA1,2:0.353039598792;ZIC1..3:0.32292410946;SP1:0.316885986003;TLX2:0.304172673464;ZNF148:0.282941030614;CRX:0.27717796619;TEAD1:0.275187468777;ELK1,4_GABP{A,B1}:0.269495131497;PAX1,9:0.242839460053;YY1:0.24232735943;PDX1:0.241769509207;ADNP_IRX_SIX_ZHX:0.233840419879;TBX4,5:0.227459260483;IKZF1:0.143390905176;RFX2..5_RFXANK_RFXAP:0.138592430216;HIF1A:0.102201702305;MAFB:0.0822781937148;POU2F1..3:0.0787554512506;ZBTB16:0.066234763749;MYB:0.065057096686;PAX2:0.0562380181026;CREB1:0.0485470604921;TAL1_TCF{3,4,12}:0.040686755135;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0334415339362;SRF:0.012273380424;HOX{A5,B5}:-0.0154646722239;FOX{F1,F2,J1}:-0.019825317589;NKX6-1,2:-0.0287652089737;CDC5L:-0.0369355293345;TFCP2:-0.0411572357347;NR6A1:-0.0788020833359;ATF5_CREB3:-0.0864720922886;FOXP3:-0.0898535931626;ATF6:-0.0923034528293;T:-0.101727388649;bHLH_family:-0.11515642323;GCM1,2:-0.126989364245;RORA:-0.135735437952;NFIX:-0.140077156422;FOXM1:-0.144859669785;NR3C1:-0.148295662703;PAX8:-0.150567095547;AIRE:-0.176487728148;TBP:-0.188050155814;MEF2{A,B,C,D}:-0.206591651668;STAT1,3:-0.21384824949;ATF4:-0.226262642808;NR1H4:-0.230721810345;BPTF:-0.243545277494;FOXA2:-0.261970034204;SPIB:-0.27153925859;LMO2:-0.277734987799;HNF1A:-0.288496180656;RUNX1..3:-0.291638175706;SPI1:-0.305139972704;ELF1,2,4:-0.318849083563;SNAI1..3:-0.32581541097;TLX1..3_NFIC{dimer}:-0.354937385136;ESR1:-0.362049198415;HES1:-0.3800192242;FOXQ1:-0.387342495372;EVI1:-0.393571539208;NFE2L1:-0.394073888588;CDX1,2,4:-0.394197213413;GLI1..3:-0.394955544456;NFATC1..3:-0.412209584955;MYOD1:-0.418921182059;HNF4A_NR2F1,2:-0.439130214824;FOXP1:-0.445586811672;PAX4:-0.513573484667;DMAP1_NCOR{1,2}_SMARC:-0.515339401212;ARID5B:-0.553197698276;AR:-0.587892223997;FOXL1:-0.594296991408;SREBF1,2:-0.618658725962;NFKB1_REL_RELA:-0.618661118549;HLF:-0.684150309695;ETS1,2:-0.691997673333;NR5A1,2:-0.695447877329;TP53:-0.700955939406;NFE2:-0.710755267568;NFIL3:-0.750800784101;IRF7:-0.765611374702;EBF1:-0.776865481805;ZEB1:-0.805493200162;SPZ1:-0.805525949269;RXRA_VDR{dimer}:-0.846329831579;ALX1:-0.863467592596;FOS_FOS{B,L1}_JUN{B,D}:-0.876585680567;NFE2L2:-0.927305456141;FOX{D1,D2}:-1.01807471943;IRF1,2:-1.03407025596;HAND1,2:-1.05374522184;TEF:-1.07867794953;BACH2:-1.0834644962;FOSL2:-1.10902583824;CEBPA,B_DDIT3:-1.1374238384;ESRRA:-1.13852257154;ALX4:-1.15707030341;STAT2,4,6:-1.24836378519;PPARG:-1.25833162184;FOXO1,3,4:-1.43421773846;NKX2-2,8:-1.66310194204 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:857-27C9;search_select_hide=table117:857-27C9 | |||
}} | }} |
Latest revision as of 19:21, 4 June 2020
Name: | whole body, embryo E12 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs10587 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10587
0 | 0 |
1 | 0.112 |
10 | 0 |
100 | 0.146 |
1000 | 0 |
1001 | -0.0749 |
1002 | 0.309 |
1003 | 0.0362 |
1004 | 0.255 |
1005 | -0.0507 |
1006 | -0.00509 |
1007 | 0.107 |
1008 | 0 |
1009 | -0.143 |
101 | 0.101 |
1010 | 0 |
1011 | 0.122 |
1012 | 0 |
1013 | -0.124 |
1014 | 0.0585 |
1015 | 0.251 |
1016 | 0.439 |
1017 | 0 |
1018 | 0.0503 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | -0.0487 |
1022 | -0.0924 |
1023 | 0 |
1024 | -0.0523 |
1025 | 0.146 |
1026 | 0 |
1027 | 0.353 |
1028 | 0 |
1029 | 0.237 |
103 | 0 |
1030 | 0 |
1031 | 0.231 |
1032 | -0.184 |
1033 | 0.0912 |
1034 | 0 |
1035 | 0 |
1036 | 0.0659 |
1037 | 0 |
1038 | 0.0417 |
1039 | -0.238 |
104 | 0 |
1040 | 0.0835 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10587
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10587
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.039 |
10 | 10 | 0.0687 |
100 | 100 | 0.942 |
101 | 101 | 0.735 |
102 | 102 | 0.64 |
103 | 103 | 0.0304 |
104 | 104 | 0.904 |
105 | 105 | 0.313 |
106 | 106 | 0.0324 |
107 | 107 | 0.197 |
108 | 108 | 0.782 |
109 | 109 | 0.0139 |
11 | 11 | 0.0393 |
110 | 110 | 0.068 |
111 | 111 | 0.0207 |
112 | 112 | 0.00814 |
113 | 113 | 0.958 |
114 | 114 | 0.0169 |
115 | 115 | 0.484 |
116 | 116 | 0.28 |
117 | 117 | 0.0225 |
118 | 118 | 0.565 |
119 | 119 | 0.127 |
12 | 12 | 0.954 |
120 | 120 | 0.924 |
121 | 121 | 0.464 |
122 | 122 | 0.895 |
123 | 123 | 0.61 |
124 | 124 | 0.653 |
125 | 125 | 0.273 |
126 | 126 | 0.209 |
127 | 127 | 0.226 |
128 | 128 | 0.0524 |
129 | 129 | 0.147 |
13 | 13 | 0.00838 |
130 | 130 | 0.883 |
131 | 131 | 0.781 |
132 | 132 | 0.26 |
133 | 133 | 0.42 |
134 | 134 | 0.983 |
135 | 135 | 0.718 |
136 | 136 | 0.093 |
137 | 137 | 0.582 |
138 | 138 | 0.852 |
139 | 139 | 0.0139 |
14 | 14 | 0.471 |
140 | 140 | 0.0138 |
141 | 141 | 0.208 |
142 | 142 | 0.852 |
143 | 143 | 0.196 |
144 | 144 | 0.799 |
145 | 145 | 0.129 |
146 | 146 | 0.672 |
147 | 147 | 0.627 |
148 | 148 | 0.0864 |
149 | 149 | 0.155 |
15 | 15 | 0.0751 |
150 | 150 | 0.356 |
151 | 151 | 0.328 |
152 | 152 | 0.0722 |
153 | 153 | 0.193 |
154 | 154 | 0.542 |
155 | 155 | 0.585 |
156 | 156 | 0.0538 |
157 | 157 | 0.731 |
158 | 158 | 0.359 |
159 | 159 | 0.551 |
160 | 160 | 0.365 |
161 | 161 | 0.223 |
162 | 162 | 0.979 |
163 | 163 | 0.436 |
164 | 164 | 0.0267 |
165 | 165 | 0.344 |
166 | 166 | 0.84 |
167 | 167 | 0.306 |
168 | 168 | 0.898 |
169 | 169 | 0.00198 |
17 | 17 | 0.051 |
18 | 18 | 0.612 |
19 | 19 | 0.147 |
2 | 2 | 0.999 |
20 | 20 | 0.589 |
21 | 21 | 0.596 |
22 | 22 | 0.201 |
23 | 23 | 0.262 |
24 | 24 | 0.171 |
25 | 25 | 0.371 |
26 | 26 | 0.0378 |
27 | 27 | 0.592 |
28 | 28 | 0.478 |
29 | 29 | 0.12 |
3 | 3 | 0.0807 |
30 | 30 | 0.825 |
31 | 31 | 0.594 |
32 | 32 | 0.2 |
33 | 33 | 0.24 |
34 | 34 | 0.891 |
35 | 35 | 0.332 |
36 | 36 | 0.14 |
37 | 37 | 0.0204 |
38 | 38 | 0.274 |
39 | 39 | 0.345 |
4 | 4 | 0.72 |
40 | 40 | 0.191 |
41 | 41 | 0.44 |
42 | 42 | 0.332 |
43 | 43 | 0.119 |
44 | 44 | 0.0169 |
45 | 45 | 0.788 |
46 | 46 | 0.139 |
47 | 47 | 0.079 |
48 | 48 | 0.0535 |
49 | 49 | 0.115 |
5 | 5 | 0.135 |
50 | 50 | 0.85 |
51 | 51 | 0.473 |
52 | 52 | 0.51 |
53 | 53 | 0.946 |
54 | 54 | 0.602 |
55 | 55 | 0.354 |
56 | 56 | 0.397 |
57 | 57 | 0.293 |
58 | 58 | 0.168 |
59 | 59 | 0.0893 |
6 | 6 | 0.562 |
60 | 60 | 0.1 |
61 | 61 | 0.231 |
62 | 62 | 0.0623 |
63 | 63 | 0.113 |
64 | 64 | 0.431 |
65 | 65 | 0.155 |
66 | 66 | 0.902 |
67 | 67 | 0.665 |
68 | 68 | 0.18 |
69 | 69 | 0.623 |
7 | 7 | 0.106 |
70 | 70 | 2.14811e-4 |
71 | 71 | 0.0446 |
72 | 72 | 0.498 |
73 | 73 | 0.0341 |
74 | 74 | 0.351 |
75 | 75 | 0.021 |
76 | 76 | 0.554 |
77 | 77 | 0.178 |
78 | 78 | 0.115 |
79 | 79 | 0.0875 |
8 | 8 | 0.0524 |
80 | 80 | 0.559 |
81 | 81 | 0.536 |
82 | 82 | 0.0834 |
83 | 83 | 0.117 |
84 | 84 | 0.711 |
85 | 85 | 0.0331 |
86 | 86 | 0.251 |
87 | 87 | 0.263 |
88 | 88 | 0.553 |
89 | 89 | 0.176 |
9 | 9 | 0.553 |
90 | 90 | 0.00561 |
91 | 91 | 0.352 |
92 | 92 | 0.0787 |
93 | 93 | 0.454 |
94 | 94 | 0.582 |
95 | 95 | 0.0553 |
96 | 96 | 0.379 |
97 | 97 | 0.604 |
98 | 98 | 0.482 |
99 | 99 | 0.565 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10587
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000295 (mouse embryonic day 12 sample)
0011434 (mouse whole body- embryo E12 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
FF:0000294 (mouse embryonic day 11 sample)