FFCP PHASE1:Mm9::chr12:73509833..73509838,-: Difference between revisions
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{{FFCP|EntrezGene=104001|HGNC=|MCL_coexpression_id=1|UniProt=Q4FJL2,Q8K0T0|association_with_transcript=87bp_to_NM_153457,uc007nvk.1_5end|description=CAGE_peak_7_at_Rtn1_5end|id=chr12:73509833..73509838,-|ontology_enrichment_celltype=CL:0000117!2.95e-15!23;CL:0000337!2.95e-15!23;CL:0000221!1.15e-13!44;CL:0000133!1.15e-13!44;CL:0002319!5.98e-13!43;CL:0000540!4.12e-11!33;CL:0000047!4.12e-11!33;CL:0000031!4.12e-11!33;CL:0000404!4.12e-11!33;CL:0000055!1.25e-09!50;CL:0000393!4.11e-08!39;CL:0000211!4.11e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.18e-25,23;CL:0000337,1.18e-25,23;CL:0000540,1.36e-16,33;CL:0000047,1.36e-16,33;CL:0000031,1.36e-16,33;CL:0000404,1.36e-16,33;CL:0000221,2.44e-16,44;CL:0000133,2.44e-16,44;CL:0002319,5.07e-15,43;CL:0000393,2.13e-13,39;CL:0000211,2.13e-13,39;CL:0002321,1.73e-08,70;CL:0002610,2.26e-08,3;CL:0002614,2.52e-08,3;CL:0000120,1.68e-07,3;CL:0002613,4.59e-07,3;CL:0002612,9.98e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.70e-31!75;UBERON:0001016!1.70e-31!75;UBERON:0001017!1.20e-30!73;UBERON:0005743!1.20e-30!73;UBERON:0001049!6.97e-28!52;UBERON:0005068!6.97e-28!52;UBERON:0006241!6.97e-28!52;UBERON:0007135!6.97e-28!52;UBERON:0004121!1.93e-26!102;UBERON:0000924!1.93e-26!102;UBERON:0006601!1.93e-26!102;UBERON:0000955!2.38e-26!50;UBERON:0006238!2.38e-26!50;UBERON:0002616!1.09e-25!49;UBERON:0000033!1.83e-25!63;UBERON:0002346!2.19e-24!71;UBERON:0003075!2.19e-24!71;UBERON:0007284!2.19e-24!71;UBERON:0002020!6.17e-22!34;UBERON:0003080!2.33e-19!40;UBERON:0003056!1.35e-18!49;UBERON:0002780!2.04e-18!39;UBERON:0001890!2.04e-18!39;UBERON:0006240!2.04e-18!39;UBERON:0002791!1.14e-17!29;UBERON:0003528!1.14e-17!29;UBERON:0001893!1.14e-17!29;UBERON:0007811!2.10e-14!86;UBERON:0000153!2.33e-12!94;UBERON:0002619!2.95e-12!17;UBERON:0000956!3.52e-11!21;UBERON:0001869!3.52e-11!21;UBERON:0000203!3.52e-11!21;UBERON:0003076!4.53e-09!12;UBERON:0003057!4.53e-09!12;UBERON:0002021!1.25e-08!10;UBERON:0000411!1.25e-08!10;UBERON:0001950!1.25e-08!10;UBERON:0002420!5.54e-08!8;UBERON:0007245!5.54e-08!8;UBERON:0010009!5.54e-08!8;UBERON:0010011!5.54e-08!8;UBERON:0000454!5.54e-08!8;UBERON:0002298!3.41e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.16e-35,73;UBERON:0001016,1.68e-34,75;UBERON:0000073,2.55e-34,54;UBERON:0001049,3.93e-30,52;UBERON:0005068,3.93e-30,52;UBERON:0006241,3.93e-30,52;UBERON:0007135,3.93e-30,52;UBERON:0004121,5.47e-29,95;UBERON:0000924,5.47e-29,95;UBERON:0006601,5.47e-29,95;UBERON:0002346,5.64e-25,64;UBERON:0003075,5.64e-25,64;UBERON:0007284,5.64e-25,64;UBERON:0002020,9.41e-24,34;UBERON:0010371,9.18e-23,73;UBERON:0002616,7.80e-21,46;UBERON:0000955,2.86e-20,47;UBERON:0006238,2.86e-20,47;UBERON:0003076,1.75e-17,12;UBERON:0003057,1.75e-17,12;UBERON:0010314,1.38e-16,92;UBERON:0003528,8.19e-16,29;UBERON:0002791,8.19e-16,29;UBERON:0001893,8.19e-16,29;UBERON:0003080,1.27e-15,40;UBERON:0002780,3.98e-14,39;UBERON:0001890,3.98e-14,39;UBERON:0006240,3.98e-14,39;UBERON:0003056,2.57e-13,49;UBERON:0002420,2.85e-13,8;UBERON:0007245,2.85e-13,8;UBERON:0010009,2.85e-13,8;UBERON:0010011,2.85e-13,8;UBERON:0000454,2.85e-13,8;UBERON:0002240,1.41e-12,6;UBERON:0005174,1.41e-12,6;UBERON:0001137,1.41e-12,6;UBERON:0001948,5.94e-11,5;UBERON:0002315,5.94e-11,5;UBERON:0002950,1.46e-10,4;UBERON:0001891,1.46e-10,4;UBERON:0009616,1.46e-10,4;UBERON:0010286,1.46e-10,4;UBERON:0000025,4.70e-10,114;UBERON:0004111,7.17e-10,122;UBERON:0002021,1.38e-09,10;UBERON:0000411,1.38e-09,10;UBERON:0001950,1.38e-09,10;UBERON:0011216,3.03e-09,194;UBERON:0004684,2.26e-08,3;UBERON:0002275,2.26e-08,3;UBERON:0002038,2.52e-08,3;UBERON:0009663,2.52e-08,3;UBERON:0009661,2.52e-08,3;UBERON:0000125,2.52e-08,3;UBERON:0002308,2.52e-08,3;UBERON:0000369,6.34e-07,5;UBERON:0002435,6.34e-07,5;UBERON:0000204,6.34e-07,5;UBERON:0010082,6.34e-07,5;UBERON:0004733,6.59e-07,6;UBERON:0004732,6.59e-07,6;UBERON:0002028,6.59e-07,6;UBERON:0007277,6.59e-07,6;UBERON:0002619,6.97e-07,17;UBERON:0002257,9.98e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.659058548203415,0.972149495371417,0,0,0,0,0,0,0,0,2.42779753031517,2.11596391708813,3.80298842103708,0,0,0,0,0,1.19840044207362,3.45796474789399,0,0.135005938331691,0,3.71346279724945,3.53389665522582,0.489963196859816,0.0958454710182364,0.919218786610021,4.40463523997555,4.08599481872601,4.6081959976873,1.97829431595291,2.65314166446988,2.08365348222704,2.79182999001381,5.06486349028512,4.88954392885792,1.17851434189467,2.70506193518296,1.67759501242771,0.075726193333184,0.453429360640713,0,0,0,0,0,0,0.421333260395256,0,0,0,2.25349471642689,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0.230615497256059,0,0,0.125666591329675,0,0,0,0,0,0,0,4.9772735491963,4.81727425670947,0,0,0,0,4.19413790333504,1.37250180845588,0.628271760564322,1.39059456153821,3.06858548796397,2.28566849015516,2.27137768294861,0,0,0,0,0,0,0,0.150704817835715,0.340182495756639,0.12811372028485,0.468508622798644,1.29351685369508,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.73376933133365,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0.31399745568275,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0.238043640886014,0,0.157635144106191,0,0,0,0,0,0,0,0,0,3.69266356971921,2.81308047821288,0,0,0,0,0.430846795465598,0.238968797952552,0,0,0,0,0.395287777946524,0.642642632843614,0.283880170416537,0,0,0.659880491890142,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0.18006109403131,0.129358683782755,0,0,0.178368817602071,0.493647061806363,0,0,0,0,0,0,0,0,0,0,1.48340241608408,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0.134864346384821,0,0,0,0,1.69107881605257,0,0,0,0,0,0,0,0,0,0.864090018773596,0,0,0,0,0,0,0,0,0,0.15241361331,0,0,0,0,0.453460767230423,0,0.0897138566094757,0.671538465456314,0,0.187682475451182,0,0,0,1.6942555278512,0.460325236507177,1.71868654031819,0.68741272937475,1.37016503954128,3.7769694869485,2.02506750069542,2.70192721934532,0.906284817968409,1.55328093525546,0.103787347584177,0.399024873401031,0.170733605754134,0,0.209613162627982,0.367687016900028,0,0.206035057238894,0,0,0.50695859978048,0,0,0.128050304809739,0.229741875822453,0,0.347652977834566,0.578727661391115,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0.145346416632329,0.282328141245992,0.423073039458382,0.182927972872773,0,0.135804113845862,0.561142271657738,0.237270036248348,0.29551344712669,0,0,0.385813221962283,0.749431733813838,0.233931608445408,0.214871054048298,0.765153328275374,0.441182838239031,0.463735671240843|short_description=p7@Rtn1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=104001 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q4FJL2,Q8K0T0 | |||
|association_with_transcript=87bp_to_NM_153457,uc007nvk.1_5end | |||
|cluster_id=chr12:73509833..73509838,- | |||
|description=CAGE_peak_7_at_Rtn1_5end | |||
|id=chr12:73509833..73509838,- | |||
|ontology_enrichment_celltype=CL:0000117!2.95e-15!23;CL:0000337!2.95e-15!23;CL:0000221!1.15e-13!44;CL:0000133!1.15e-13!44;CL:0002319!5.98e-13!43;CL:0000540!4.12e-11!33;CL:0000047!4.12e-11!33;CL:0000031!4.12e-11!33;CL:0000404!4.12e-11!33;CL:0000055!1.25e-09!50;CL:0000393!4.11e-08!39;CL:0000211!4.11e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.18e-25,23;CL:0000337,1.18e-25,23;CL:0000540,1.36e-16,33;CL:0000047,1.36e-16,33;CL:0000031,1.36e-16,33;CL:0000404,1.36e-16,33;CL:0000221,2.44e-16,44;CL:0000133,2.44e-16,44;CL:0002319,5.07e-15,43;CL:0000393,2.13e-13,39;CL:0000211,2.13e-13,39;CL:0002321,1.73e-08,70;CL:0002610,2.26e-08,3;CL:0002614,2.52e-08,3;CL:0000120,1.68e-07,3;CL:0002613,4.59e-07,3;CL:0002612,9.98e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.70e-31!75;UBERON:0001016!1.70e-31!75;UBERON:0001017!1.20e-30!73;UBERON:0005743!1.20e-30!73;UBERON:0001049!6.97e-28!52;UBERON:0005068!6.97e-28!52;UBERON:0006241!6.97e-28!52;UBERON:0007135!6.97e-28!52;UBERON:0004121!1.93e-26!102;UBERON:0000924!1.93e-26!102;UBERON:0006601!1.93e-26!102;UBERON:0000955!2.38e-26!50;UBERON:0006238!2.38e-26!50;UBERON:0002616!1.09e-25!49;UBERON:0000033!1.83e-25!63;UBERON:0002346!2.19e-24!71;UBERON:0003075!2.19e-24!71;UBERON:0007284!2.19e-24!71;UBERON:0002020!6.17e-22!34;UBERON:0003080!2.33e-19!40;UBERON:0003056!1.35e-18!49;UBERON:0002780!2.04e-18!39;UBERON:0001890!2.04e-18!39;UBERON:0006240!2.04e-18!39;UBERON:0002791!1.14e-17!29;UBERON:0003528!1.14e-17!29;UBERON:0001893!1.14e-17!29;UBERON:0007811!2.10e-14!86;UBERON:0000153!2.33e-12!94;UBERON:0002619!2.95e-12!17;UBERON:0000956!3.52e-11!21;UBERON:0001869!3.52e-11!21;UBERON:0000203!3.52e-11!21;UBERON:0003076!4.53e-09!12;UBERON:0003057!4.53e-09!12;UBERON:0002021!1.25e-08!10;UBERON:0000411!1.25e-08!10;UBERON:0001950!1.25e-08!10;UBERON:0002420!5.54e-08!8;UBERON:0007245!5.54e-08!8;UBERON:0010009!5.54e-08!8;UBERON:0010011!5.54e-08!8;UBERON:0000454!5.54e-08!8;UBERON:0002298!3.41e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.16e-35,73;UBERON:0001016,1.68e-34,75;UBERON:0000073,2.55e-34,54;UBERON:0001049,3.93e-30,52;UBERON:0005068,3.93e-30,52;UBERON:0006241,3.93e-30,52;UBERON:0007135,3.93e-30,52;UBERON:0004121,5.47e-29,95;UBERON:0000924,5.47e-29,95;UBERON:0006601,5.47e-29,95;UBERON:0002346,5.64e-25,64;UBERON:0003075,5.64e-25,64;UBERON:0007284,5.64e-25,64;UBERON:0002020,9.41e-24,34;UBERON:0010371,9.18e-23,73;UBERON:0002616,7.80e-21,46;UBERON:0000955,2.86e-20,47;UBERON:0006238,2.86e-20,47;UBERON:0003076,1.75e-17,12;UBERON:0003057,1.75e-17,12;UBERON:0010314,1.38e-16,92;UBERON:0003528,8.19e-16,29;UBERON:0002791,8.19e-16,29;UBERON:0001893,8.19e-16,29;UBERON:0003080,1.27e-15,40;UBERON:0002780,3.98e-14,39;UBERON:0001890,3.98e-14,39;UBERON:0006240,3.98e-14,39;UBERON:0003056,2.57e-13,49;UBERON:0002420,2.85e-13,8;UBERON:0007245,2.85e-13,8;UBERON:0010009,2.85e-13,8;UBERON:0010011,2.85e-13,8;UBERON:0000454,2.85e-13,8;UBERON:0002240,1.41e-12,6;UBERON:0005174,1.41e-12,6;UBERON:0001137,1.41e-12,6;UBERON:0001948,5.94e-11,5;UBERON:0002315,5.94e-11,5;UBERON:0002950,1.46e-10,4;UBERON:0001891,1.46e-10,4;UBERON:0009616,1.46e-10,4;UBERON:0010286,1.46e-10,4;UBERON:0000025,4.70e-10,114;UBERON:0004111,7.17e-10,122;UBERON:0002021,1.38e-09,10;UBERON:0000411,1.38e-09,10;UBERON:0001950,1.38e-09,10;UBERON:0011216,3.03e-09,194;UBERON:0004684,2.26e-08,3;UBERON:0002275,2.26e-08,3;UBERON:0002038,2.52e-08,3;UBERON:0009663,2.52e-08,3;UBERON:0009661,2.52e-08,3;UBERON:0000125,2.52e-08,3;UBERON:0002308,2.52e-08,3;UBERON:0000369,6.34e-07,5;UBERON:0002435,6.34e-07,5;UBERON:0000204,6.34e-07,5;UBERON:0010082,6.34e-07,5;UBERON:0004733,6.59e-07,6;UBERON:0004732,6.59e-07,6;UBERON:0002028,6.59e-07,6;UBERON:0007277,6.59e-07,6;UBERON:0002619,6.97e-07,17;UBERON:0002257,9.98e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.659058548203415,0.972149495371417,0,0,0,0,0,0,0,0,2.42779753031517,2.11596391708813,3.80298842103708,0,0,0,0,0,1.19840044207362,3.45796474789399,0,0.135005938331691,0,3.71346279724945,3.53389665522582,0.489963196859816,0.0958454710182364,0.919218786610021,4.40463523997555,4.08599481872601,4.6081959976873,1.97829431595291,2.65314166446988,2.08365348222704,2.79182999001381,5.06486349028512,4.88954392885792,1.17851434189467,2.70506193518296,1.67759501242771,0.075726193333184,0.453429360640713,0,0,0,0,0,0,0.421333260395256,0,0,0,2.25349471642689,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0.230615497256059,0,0,0.125666591329675,0,0,0,0,0,0,0,4.9772735491963,4.81727425670947,0,0,0,0,4.19413790333504,1.37250180845588,0.628271760564322,1.39059456153821,3.06858548796397,2.28566849015516,2.27137768294861,0,0,0,0,0,0,0,0.150704817835715,0.340182495756639,0.12811372028485,0.468508622798644,1.29351685369508,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.73376933133365,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0.31399745568275,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0.238043640886014,0,0.157635144106191,0,0,0,0,0,0,0,0,0,3.69266356971921,2.81308047821288,0,0,0,0,0.430846795465598,0.238968797952552,0,0,0,0,0.395287777946524,0.642642632843614,0.283880170416537,0,0,0.659880491890142,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0.18006109403131,0.129358683782755,0,0,0.178368817602071,0.493647061806363,0,0,0,0,0,0,0,0,0,0,1.48340241608408,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0.134864346384821,0,0,0,0,1.69107881605257,0,0,0,0,0,0,0,0,0,0.864090018773596,0,0,0,0,0,0,0,0,0,0.15241361331,0,0,0,0,0.453460767230423,0,0.0897138566094757,0.671538465456314,0,0.187682475451182,0,0,0,1.6942555278512,0.460325236507177,1.71868654031819,0.68741272937475,1.37016503954128,3.7769694869485,2.02506750069542,2.70192721934532,0.906284817968409,1.55328093525546,0.103787347584177,0.399024873401031,0.170733605754134,0,0.209613162627982,0.367687016900028,0,0.206035057238894,0,0,0.50695859978048,0,0,0.128050304809739,0.229741875822453,0,0.347652977834566,0.578727661391115,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0.145346416632329,0.282328141245992,0.423073039458382,0.182927972872773,0,0.135804113845862,0.561142271657738,0.237270036248348,0.29551344712669,0,0,0.385813221962283,0.749431733813838,0.233931608445408,0.214871054048298,0.765153328275374,0.441182838239031,0.463735671240843 | |||
|short_description=p7@Rtn1 | |||
}} |
Latest revision as of 18:17, 26 September 2015
Short description: | p7@Rtn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Rtn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 87bp_to_NM_153457, uc007nvk.1_5end |
EntrezGene: | Rtn1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.18e-25 | 23 |
neuroblast (sensu Vertebrata) | 1.18e-25 | 23 |
neuron | 1.36e-16 | 33 |
neuronal stem cell | 1.36e-16 | 33 |
neuroblast | 1.36e-16 | 33 |
electrically signaling cell | 1.36e-16 | 33 |
ectodermal cell | 2.44e-16 | 44 |
neurectodermal cell | 2.44e-16 | 44 |
neural cell | 5.07e-15 | 43 |
electrically responsive cell | 2.13e-13 | 39 |
electrically active cell | 2.13e-13 | 39 |
embryonic cell | 1.73e-08 | 70 |
raphe nuclei neuron | 2.26e-08 | 3 |
neuron of the substantia nigra | 2.52e-08 | 3 |
granule cell | 1.68e-07 | 3 |
striatum neuron | 4.59e-07 | 3 |
neuron of the ventral spinal cord | 9.98e-07 | 3 |