FF:12121-128C6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005414 | |DRA_sample_Accession=CAGE@SAMD00005414 | ||
|accession_numbers=CAGE;DRX008784;DRR009656;DRZ001081;DRZ002466 | |accession_numbers=CAGE;DRX008784;DRR009656;DRZ001081;DRZ002466;DRZ012431;DRZ013816 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000034 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000034 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr7:19895354..19895369,-!p1@Fosb!2.57!506.20!Fosb;;chr15:101097270..101097290,+!p1@Nr4a1!2.28!1827.10!Nr4a1;;chr7:19895384..19895399,-!p2@Fosb!2.23!236.95!Fosb;;chr1:193007123..193007139,-!p1@Atf3!2.01!529.48!Atf3;;chr4:124805061..124805087,-!p1@Zc3h12a!1.95!262.62!Zc3h12a;;chr1:38721792..38721845,-!p1@Aff3!1.94!107.43!Aff3;;chr16:55838757..55838774,-!p2@Nfkbiz!1.92!95.36!Nfkbiz;;chr11:16908650..16908690,-!p1@Plek!1.86!412.03!Plek;;chr7:31206743..31206761,+!p1@Nfkbid!1.73!70.37!Nfkbid;;chr8:87502608..87502623,-!p1@Junb!1.63!633.51!Junb;;chr1:52065508..52065522,+!p2@Stat4!1.59!43.85!Stat4;;chr16:92826249..92826325,-!p1@Runx1!1.58!88.05!Runx1;;chr19:5447886..5447905,+!p1@Fosl1!1.56!35.36!Fosl1;;chr2:90936978..90937023,+!p3@Sfpi1!1.54!62.72!Sfpi1;;chr4:134708451..134708469,+!p1@Runx3!1.52!55.07!Runx3;;chr17:44873258..44873281,-!p5@Runx2!1.51!40.96!Runx2;;chr2:90936901..90936945,+!p1@Sfpi1!1.50!153.15!Sfpi1;;chr17:44872561..44872615,-!p1@Runx2!1.50!67.31!Runx2;;chr4:48058129..48058179,+!p2@Nr4a3!1.50!56.77!Nr4a3;;chr11:23670750..23670789,-!p2@Rel!1.50!56.77!Rel;;chr11:11586218..11586285,+!p1@Ikzf1!1.48!91.62!Ikzf1;;chr5:140267510..140267555,+!p2@Mafk!1.48!67.82!Mafk;;chr3:135354384..135354443,-!p1@Nfkb1!1.46!163.69!Nfkb1;;chr6:52176164..52176195,-!p1@Hoxa9!1.46!34.00!Hoxa9;;chr2:56967334..56967366,-!p1@Nr4a2!1.44!53.20!Nr4a2;;chr18:3281750..3281776,-!p2@Crem!1.44!52.18!Crem;;chr2:90936947..90936977,+!p2@Sfpi1!1.43!49.80!Sfpi1;;chr16:55822241..55822258,-!p1@Nfkbiz!1.40!709.15!Nfkbiz;;chr19:5447692..5447711,+!p2@Fosl1!1.39!23.46!Fosl1;;chr7:19895546..19895577,-!p3@Fosb!1.38!23.12!Fosb;;chr1:52065454..52065495,+!p1@Stat4!1.36!35.87!Stat4;;chr5:92391466..92391471,+!p2@Thap6!1.36!31.62!Thap6;;chr13:59923965..59924003,-!p2@Zcchc6!1.36!25.84!Zcchc6;;chr18:3281725..3281740,-!p3@Crem!1.34!26.52!Crem;;chr4:94718861..94718872,-!p2@Jun!1.32!144.65!Jun;;chr19:12871064..12871095,-!p2@Zfp91!1.31!19.38!Zfp91;;chr10:20880629..20880683,-!p1@Myb!1.30!53.37!Myb;;chr19:5637528..5637548,+!p2@Rela!1.29!105.56!Rela;;chr17:45692676..45692695,+!p2@Nfkbie!1.29!36.72!Nfkbie;;chr4:48058016..48058032,+!p3@Nr4a3!1.28!30.60!Nr4a3;;chr1:36364590..36364608,+!p1@Arid5a!1.26!170.66!Arid5a;;chr14:79915425..79915501,+!p1@Elf1!1.26!148.56!Elf1;;chr11:23670953..23671028,-!p1@Rel!1.25!94.68!Rel;;chr3:135271185..135271254,-!p4@Nfkb1!1.25!30.60!Nfkb1;;chr12:86814833..86814846,+!p1@Fos!1.24!375.65!Fos;;chr11:90252223..90252240,-!p1@Hlf!1.24!132.92!Hlf;;chr1:193041811..193041838,-!p2@Atf3!1.23!15.98!Atf3;;chr6:53523358..53523388,+!p1@Creb5!1.22!182.73!Creb5;;chr19:46379199..46379301,+!p1@Nfkb2!1.22!87.03!Nfkb2;;chr16:3744192..3744206,+!p4@Zfp263!1.21!19.21!Zfp263;;chr1:52065530..52065548,+!p3@Stat4!1.19!14.62!Stat4;;chr12:56593574..56593592,-!p1@Nfkbia!1.18!720.88!Nfkbia;;chr4:48058047..48058062,+!p1@Nr4a3!1.18!21.76!Nr4a3;;chr6:108610428..108610440,+!p4@Bhlhe40!1.18!19.21!Bhlhe40;;chr19:43686789..43686811,+!p1@Nkx2-3!1.18!14.28!Nkx2-3;;chr15:79177964..79177986,+!p1@Maff!1.17!47.08!Maff;;chr4:94718879..94718898,-!p1@Jun!1.16!947.80!Jun;;chr17:45692642..45692663,+!p1@Nfkbie!1.16!43.17!Nfkbie;;chr3:30993974..30994045,+!p1@Skil!1.15!358.65!Skil;;chr11:53583544..53583559,+!p1@Irf1!1.15!217.91!Irf1;;chr4:124805092..124805135,-!p2@Zc3h12a!1.15!54.90!Zc3h12a;;chr7:31207408..31207450,+!p4@Nfkbid!1.15!21.42!Nfkbid;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.15!16.83!Zbtb11;;chr7:71083729..71083742,-!p4@Klf13!1.14!22.27!Klf13;;chr13:83663902..83663927,+!p1@Mef2c!1.13!300.86!Mef2c;;chr13:5860776..5860796,+!p1@Klf6!1.13!296.78!Klf6;;chr7:20214704..20214800,-!p1@Relb!1.13!41.30!Relb;;chr16:3744162..3744180,+!p2@Zfp263!1.13!34.17!Zfp263;;chr11:100683839..100683890,-!p2@Stat5b!1.13!29.24!Stat5b;;chr4:55545337..55545357,-!p1@Klf4!1.12!178.65!Klf4;;chr15:25914235..25914246,+!p5@Zfp622!1.12!12.24!Zfp622;;chr2:168781014..168781025,-!p4@LOC100502777,p4@Zfp64!1.12!12.07!Zfp64;;chr6:108610766..108610781,+!p2@Bhlhe40!1.11!21.59!Bhlhe40;;chr6:133986042..133986052,+!p7@Etv6!1.10!15.30!Etv6;;chr2:126501799..126501832,-!p4@Gabpb1!1.10!11.73!Gabpb1;;chr15:38230415..38230426,-!p2@Klf10!1.09!39.27!Klf10;;chr15:103085802..103085817,-!p4@Nfe2!1.09!14.11!Nfe2;;chr10:20880731..20880775,-!p2@Myb!1.08!23.12!Myb;;chr15:38230448..38230470,-!p1@Klf10!1.06!219.27!Klf10;;chr2:168781029..168781093,-!p2@LOC100502777,p2@Zfp64!1.06!36.21!Zfp64;;chr6:108610610..108610676,+!p1@Bhlhe40!1.05!501.44!Bhlhe40;;chr17:51971960..51971979,-!p1@Satb1!1.05!13.77!Satb1;;chr6:99216488..99216534,-!p2@Foxp1!1.04!28.56!Foxp1;;chr13:30841099..30841116,+!p1@Irf4!1.04!15.64!Irf4;;chr16:95680889..95680991,-!p1@Erg!1.03!80.74!Erg;;chr5:125538737..125538781,-!p2@Ncor2!1.03!35.70!Ncor2;;chr14:79915502..79915514,+!p4@Elf1!1.03!14.96!Elf1;;chr17:51971932..51971958,-!p2@Satb1!1.03!13.26!Satb1;;chr2:126501847..126501876,-!p5@Gabpb1!1.03!11.05!Gabpb1;;chr6:28348078..28348109,-!p5@Zfp800!1.01!9.18!Zfp800;;chr7:31208285..31208312,+!p3@Nfkbid!1.00!9.86!Nfkbid;;chr16:55838743..55838754,-!p6@Nfkbiz!1.00!9.01!Nfkbiz;;chr18:75527210..75527215,+!p4@Smad7!0.99!14.96!Smad7;;chr11:23671230..23671264,-!p6@Rel!0.99!8.84!Rel;;chr1:38721779..38721790,-!p6@Aff3!0.99!8.84!Aff3;;chr1:38721767..38721778,-!p5@Aff3!0.99!8.84!Aff3;;chr7:138553839..138553860,-!p2@Ikzf5!0.97!8.33!Ikzf5;;chr6:133985709..133985735,+!p5@Etv6!0.96!23.12!Etv6;;chr5:22940353..22940372,+!p3@Mll5!0.96!16.15!Mll5;;chr11:11585678..11585745,+!p5@Ikzf1!0.96!11.90!Ikzf1;;chr14:79915521..79915539,+!p5@Elf1!0.95!9.69!Elf1;;chr16:55838940..55838966,-!p5@Nfkbiz!0.95!8.84!Nfkbiz;;chr1:92949999..92950097,+!p1@Lrrfip1!0.94!210.09!Lrrfip1;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!0.94!56.94!Hmga1;;chr1:133904217..133904250,+!p5@Elk4!0.94!25.84!Elk4;;chr15:79178060..79178074,+!p2@Maff!0.94!10.20!Maff;;chr14:76904313..76904328,+!p1@Tsc22d1!0.93!1507.20!Tsc22d1;;chr13:5860872..5860883,+!p3@Klf6!0.93!15.30!Klf6;;chr13:83663868..83663894,+!p2@Mef2c!0.92!108.62!Mef2c;;chr11:100800641..100800669,-!p3@Stat3!0.92!12.92!Stat3;;chr15:79178029..79178044,+!p4@Maff!0.92!9.18!Maff;;chr6:88148650..88148669,+!p1@Gata2!0.91!62.55!Gata2;;chr2:126501197..126501245,-!p1@Gabpb1!0.91!56.94!Gabpb1;;chr17:44873393..44873418,-!p4@Runx2!0.91!12.58!Runx2;;chr4:134676555..134676575,+!p2@Runx3!0.91!7.14!Runx3;;chr8:73222830..73222844,+!p1@Jund!0.90!1809.25!Jund;;chr6:133985993..133986029,+!p2@Etv6!0.90!46.74!Etv6;;chr10:119913792..119913820,-!p5@Hmga2!0.90!12.24!Hmga2;;chr10:126727842..126727859,+!p1@Ddit3!0.89!206.01!Ddit3;;chr19:5637501..5637517,+!p4@Rela!0.89!29.07!Rela;;chr19:46380235..46380277,+!p3@Nfkb2!0.89!14.96!Nfkb2;;chr6:52176144..52176161,-!p2@Hoxa9!0.89!6.80!Hoxa9;;chr6:28347999..28348023,-!p3@Zfp800!0.88!6.63!Zfp800;;chr19:37509324..37509337,+!p1@Hhex!0.87!48.27!Hhex;;chr15:25914217..25914232,+!p3@Zfp622!0.87!12.58!Zfp622;;chr12:32635051..32635062,-!p2@Hbp1!0.87!9.52!Hbp1;;chr2:126501184..126501196,-!p6@Gabpb1!0.87!9.18!Gabpb1;;chr6:29479277..29479296,+!p2@Irf5!0.87!6.46!Irf5;;chr10:5734525..5734569,-!p3@Esr1!0.86!10.54!Esr1;;chr2:168780729..168780740,-!p3@LOC100502777,p3@Zfp64!0.86!6.29!Zfp64;;chr6:52163319..52163342,-!p1@Hoxa3!0.85!9.18!Hoxa3;;chr11:11585912..11585950,+!p6@Ikzf1!0.85!7.99!Ikzf1;;chr1:92950128..92950139,+!p4@Lrrfip1!0.85!6.12!Lrrfip1;;chr5:32438395..32438406,+!p3@Fosl2!0.84!9.18!Fosl2;;chr13:64254437..64254453,-!p4@Zfp367!0.84!8.16!Zfp367;;chr9:32348943..32349001,-!p1@Fli1!0.83!49.97!Fli1;;chr3:30995296..30995300,+!p6@Skil!0.83!7.31!Skil;;chr17:71200529..71200556,-!p1@Tgif1!0.82!97.40!Tgif1;;chr12:86940338..86940357,+!p1@Jdp2!0.82!58.98!Jdp2;;chr11:100721761..100721851,+!p1@Stat5a!0.82!44.02!Stat5a;;chrX:137077653..137077669,-!p3@Tsc22d3!0.82!26.86!Tsc22d3;;chr13:64254457..64254497,-!p1@Zfp367!0.82!26.69!Zfp367;;chr4:63064364..63064384,-!p1@Akna!0.82!17.34!Akna;;chr11:18918434..18918489,-!p3@Meis1!0.82!9.18!Meis1;;chr10:20880698..20880717,-!p3@Myb!0.82!9.18!Myb;;chr16:3872255..3872283,-!p4@Zfp597!0.82!8.50!Zfp597;;chr17:44872524..44872537,-!p9@Runx2!0.82!5.61!Runx2;;chr17:44873235..44873245,-!p17@Runx2!0.82!5.61!Runx2;;chr6:86619104..86619119,-!p1@Mxd1!0.81!47.76!Mxd1;;chr11:90250944..90250982,-!p2@Hlf!0.81!9.52!Hlf;;chr5:140267476..140267493,+!p1@Mafk!0.80!32.47!Mafk;;chr1:133904901..133904934,+!p3@Elk4!0.80!16.49!Elk4;;chr3:30408603..30408668,-!p1@Mecom!0.80!13.09!Mecom;;chr10:5734473..5734489,-!p5@Esr1!0.80!5.27!Esr1;;chr16:92826232..92826245,-!p4@Runx1!0.80!5.27!Runx1;;chr2:156665889..156665900,+!p8@Tgif2!0.80!5.27!Tgif2;;chr6:133985790..133985801,+!p8@Etv6!0.79!6.80!Etv6;;chr5:125538905..125538910,-!p4@Ncor2!0.79!6.80!Ncor2;;chr18:35020854..35020869,+!p1@Egr1!0.78!210.60!Egr1;;chr2:168415815..168415872,-!p1@Nfatc2!0.78!29.58!Nfatc2;;chr11:23978111..23978134,+!p3@Bcl11a!0.78!11.05!Bcl11a;;chr11:18918406..18918431,-!p6@Meis1!0.78!6.97!Meis1;;chr2:56976467..56976482,-!p4@Nr4a2!0.78!6.12!Nr4a2;;chr6:108610513..108610528,+!p3@Bhlhe40!0.77!7.82!Bhlhe40;;chr11:90251852..90251855,-!p4@Hlf!0.77!6.12!Hlf;;chr4:48058102..48058110,+!p5@Nr4a3!0.77!5.61!Nr4a3;;chr11:62272200..62272221,-!p11@Ncor1!0.77!4.93!Ncor1;;chr19:46379320..46379329,+!p9@Nfkb2!0.77!4.93!Nfkb2;;chr8:74842952..74842970,+!p1@Klf2!0.76!353.39!Klf2;;chr7:20408047..20408125,-!p1@Bcl3!0.76!60.34!Bcl3;;chr18:80909801..80909819,-!p1@Nfatc1!0.76!30.77!Nfatc1;;chr16:87699206..87699229,+!p3@Bach1!0.76!28.39!Bach1;;chr6:133986088..133986122,+!p4@Etv6!0.76!22.27!Etv6;;chr7:29551464..29551487,-!p2@Nfkbib!0.76!19.89!Nfkbib;;chr8:87225670..87225697,+!p2@Lyl1!0.76!15.13!Lyl1;;chr13:59924354..59924366,-!p3@Zcchc6!0.76!9.52!Zcchc6;;chr8:73222425..73222444,+!p2@Jund!0.76!4.76!Jund;;chr1:64579145..64579168,+!p6@Creb1!0.76!4.76!Creb1;;chr15:80085920..80085941,+!p1@Atf4!0.75!591.86!Atf4;;chr12:87027598..87027652,+!p1@Batf!0.75!11.39!Batf;;chr3:87329568..87329589,+!p2@Etv3!0.75!6.63!Etv3;;chr16:55838779..55838788,-!p9@Nfkbiz!0.75!4.59!Nfkbiz;;chr7:19895122..19895142,-!p4@Fosb!0.75!4.59!Fosb;;chr2:153475178..153475196,+!p1@Dnmt3b!0.74!10.37!Dnmt3b;;chr2:156665817..156665877,+!p1@Tgif2!0.73!31.28!Tgif2;;chr10:2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451!0.18!18.02!Zfp451;;chr2:17986272..17986332,+!p2@Mllt10!0.18!13.77!Mllt10;;chr6:131338400..131338415,-!p3@Csda!0.18!13.60!Csda;;chr16:4559608..4559681,-!p1@Tfap4!0.18!10.54!Tfap4;;chr2:162880387..162880413,+!p1@Mybl2!0.18!7.82!Mybl2;;chr13:67585161..67585205,-!p1@Zfp874b!0.18!6.46!Zfp874b;;chr8:114167325..114167350,+!p2@Zfp1!0.18!4.25!Zfp1;;chrX:45807450..45807478,-!p3@Elf4!0.18!3.91!Elf4;;chr10:119913546..119913583,-!p3@Hmga2!0.18!2.04!Hmga2;;chr4:151235776..151235788,-!p5@Camta1!0.18!1.53!Camta1;;chr19:28754600..28754612,-!p2@Glis3!0.18!1.36!Glis3;;chr1:38684383..38684394,-!p4@Aff3!0.18!1.02!Aff3;;chr17:71202982..71202985,-!p7@Tgif1!0.18!0.85!Tgif1;;chr15:50721503..50721514,-!p15@Trps1!0.18!0.85!Trps1;;chr15:102197405..102197454,-!p1@Sp7!0.18!0.51!Sp7;;chr13:83712735..83712761,+!p9@Mef2c!0.18!0.51!Mef2c;;chr15:103083199..103083215,-!p8@Nfe2!0.18!0.51!Nfe2;;chr14:32979060..32979091,+!p4@Gm6768,p4@Ncoa4!0.18!0.51!Ncoa4;;chr4:84321280..84321298,-!p5@Bnc2!0.18!0.51!Bnc2;;chr3:51144436..51144443,-!p15@Elf2!0.18!0.51!Elf2;;chr4:63064311..63064320,-!p8@Akna!0.18!0.51!Akna;;chr4:48061898..48061935,+!p8@Nr4a3!0.18!0.51!Nr4a3;;chr3:133207614..133207630,-!p4@Tet2!0.18!0.51!Tet2;;chr2:71384401..71384424,-!p3@Dlx2!0.18!0.51!Dlx2;;chr8:87425854..87425891,+!p1@Klf1!0.18!0.51!Klf1;;chr7:52962498..52962512,+!p12@Dbp!0.18!0.51!Dbp;;chrX:137077530..137077533,-!p11@Tsc22d3!0.18!0.51!Tsc22d3;;chr9:8899828..8899855,+!p3@Pgr!0.18!0.51!Pgr;;chr11:90249521..90249551,-!p3@Hlf!0.18!0.51!Hlf;;chr10:5734677..5734702,-!p4@Esr1!0.18!0.51!Esr1;;chr10:30375647..30375658,-!p7@Ncoa7!0.18!0.51!Ncoa7;;chr10:119913766..119913779,-!p10@Hmga2!0.18!0.51!Hmga2;;chr10:30562939..30562969,-!p5@Hey2!0.18!0.51!Hey2;;chr10:5734582..5734595,-!p10@Esr1!0.18!0.51!Esr1;;chr11:53164494..53164501,+!p10@Aff4!0.18!0.51!Aff4;;chr10:20032169..20032206,+!p8@Bclaf1!0.18!0.51!Bclaf1;;chr17:51951383..51951409,-!p19@Satb1!0.18!0.51!Satb1;;chr19:23215616..23215627,+!p9@Klf9!0.18!0.51!Klf9;;chr19:46380433..46380451,+!p5@Nfkb2!0.18!0.51!Nfkb2;;chr17:71201050..71201078,-!p9@Tgif1!0.18!0.51!Tgif1;;chr6:99385365..99385376,-!p21@Foxp1!0.18!0.51!Foxp1;;chr6:52184901..52184959,-!p2@Hoxa10!0.18!0.51!Hoxa10;;chr5:31754898..31754907,+!p5@Zfp512!0.18!0.51!Zfp512;;chr2:168427068..168427115,-!p3@Nfatc2!0.18!0.51!Nfatc2;;chr1:186556307..186556318,-!p7@Hlx!0.18!0.51!Hlx;;chr2:156665757..156665768,+!p7@Tgif2!0.18!0.51!Tgif2;;chr5:147760216..147760292,+!p1@Gtf3a!0.17!60.00!Gtf3a;;chr5:138187195..138187255,+!p1@Tsc22d4!0.17!56.60!Tsc22d4;;chr8:47825107..47825145,+!p1@Irf2!0.17!53.37!Irf2;;chr3:90097085..90097175,+!p1@Gatad2b!0.17!53.03!Gatad2b;;chr5:139060930..139060975,-!p1@Zfp68!0.17!47.93!Zfp68;;chr15:76181733..76181767,+!p1@Maf1!0.17!38.08!Maf1;;chr19:5424906..5425026,-!p1@Drap1!0.17!35.36!Drap1;;chr11:106993428..106993480,-!p1@Bptf!0.17!34.00!Bptf;;chr18:76401546..76401613,+!p1@Smad2!0.17!27.54!Smad2;;chr7:35904304..35904320,+!p1@Cebpa!0.17!26.52!Cebpa;;chr9:72380021..72380078,+!p1@Rfx7!0.17!24.14!Rfx7;;chr1:182499095..182499141,+!p2@Parp1!0.17!22.95!Parp1;;chr12:110031156..110031198,+!p2@Yy1!0.17!18.36!Yy1;;chr11:115891618..115891699,+!p1@Unk!0.17!15.98!Unk;;chr12:72116953..72117050,+!p1@Arid4a!0.17!15.64!Arid4a;;chr17:24806675..24806697,+!p2@Zfp598!0.17!6.12!Zfp598;;chr1:133904670..133904731,+!p2@Elk4!0.17!6.12!Elk4;;chr4:131817441..131817487,-!p1@Gmeb1!0.17!5.27!Gmeb1;;chr4:148275237..148275311,+!p2@Casz1!0.17!4.76!Casz1;;chr7:46773114..46773155,+!p1@Zfp619!0.17!4.25!Zfp619;;chr9:20297135..20297154,-!p2@Zfp426!0.17!4.08!Zfp426;;chr18:69504123..69504155,+!p5@Tcf4!0.17!4.08!Tcf4;;chr4:126700650..126700678,+!p5@Sfpq!0.17!1.87!Sfpq;;chr19:9016651..9016662,+!p3@Mta2!0.17!1.70!Mta2;;chr17:21145981..21145998,+!p2@Zfp160!0.17!1.70!Zfp160;;chr11:102178005..102178022,-!p8@Ubtf!0.17!1.36!Ubtf;; | |expression_enrichment_score=chr7:19895354..19895369,-!p1@Fosb!2.57!506.20!Fosb;;chr15:101097270..101097290,+!p1@Nr4a1!2.28!1827.10!Nr4a1;;chr7:19895384..19895399,-!p2@Fosb!2.23!236.95!Fosb;;chr1:193007123..193007139,-!p1@Atf3!2.01!529.48!Atf3;;chr4:124805061..124805087,-!p1@Zc3h12a!1.95!262.62!Zc3h12a;;chr1:38721792..38721845,-!p1@Aff3!1.94!107.43!Aff3;;chr16:55838757..55838774,-!p2@Nfkbiz!1.92!95.36!Nfkbiz;;chr11:16908650..16908690,-!p1@Plek!1.86!412.03!Plek;;chr7:31206743..31206761,+!p1@Nfkbid!1.73!70.37!Nfkbid;;chr8:87502608..87502623,-!p1@Junb!1.63!633.51!Junb;;chr1:52065508..52065522,+!p2@Stat4!1.59!43.85!Stat4;;chr16:92826249..92826325,-!p1@Runx1!1.58!88.05!Runx1;;chr19:5447886..5447905,+!p1@Fosl1!1.56!35.36!Fosl1;;chr2:90936978..90937023,+!p3@Sfpi1!1.54!62.72!Sfpi1;;chr4:134708451..134708469,+!p1@Runx3!1.52!55.07!Runx3;;chr17:44873258..44873281,-!p5@Runx2!1.51!40.96!Runx2;;chr2:90936901..90936945,+!p1@Sfpi1!1.50!153.15!Sfpi1;;chr17:44872561..44872615,-!p1@Runx2!1.50!67.31!Runx2;;chr4:48058129..48058179,+!p2@Nr4a3!1.50!56.77!Nr4a3;;chr11:23670750..23670789,-!p2@Rel!1.50!56.77!Rel;;chr11:11586218..11586285,+!p1@Ikzf1!1.48!91.62!Ikzf1;;chr5:140267510..140267555,+!p2@Mafk!1.48!67.82!Mafk;;chr3:135354384..135354443,-!p1@Nfkb1!1.46!163.69!Nfkb1;;chr6:52176164..52176195,-!p1@Hoxa9!1.46!34.00!Hoxa9;;chr2:56967334..56967366,-!p1@Nr4a2!1.44!53.20!Nr4a2;;chr18:3281750..3281776,-!p2@Crem!1.44!52.18!Crem;;chr2:90936947..90936977,+!p2@Sfpi1!1.43!49.80!Sfpi1;;chr16:55822241..55822258,-!p1@Nfkbiz!1.40!709.15!Nfkbiz;;chr19:5447692..5447711,+!p2@Fosl1!1.39!23.46!Fosl1;;chr7:19895546..19895577,-!p3@Fosb!1.38!23.12!Fosb;;chr1:52065454..52065495,+!p1@Stat4!1.36!35.87!Stat4;;chr5:92391466..92391471,+!p2@Thap6!1.36!31.62!Thap6;;chr13:59923965..59924003,-!p2@Zcchc6!1.36!25.84!Zcchc6;;chr18:3281725..3281740,-!p3@Crem!1.34!26.52!Crem;;chr4:94718861..94718872,-!p2@Jun!1.32!144.65!Jun;;chr19:12871064..12871095,-!p2@Zfp91!1.31!19.38!Zfp91;;chr10:20880629..20880683,-!p1@Myb!1.30!53.37!Myb;;chr19:5637528..5637548,+!p2@Rela!1.29!105.56!Rela;;chr17:45692676..45692695,+!p2@Nfkbie!1.29!36.72!Nfkbie;;chr4:48058016..48058032,+!p3@Nr4a3!1.28!30.60!Nr4a3;;chr1:36364590..36364608,+!p1@Arid5a!1.26!170.66!Arid5a;;chr14:79915425..79915501,+!p1@Elf1!1.26!148.56!Elf1;;chr11:23670953..23671028,-!p1@Rel!1.25!94.68!Rel;;chr3:135271185..135271254,-!p4@Nfkb1!1.25!30.60!Nfkb1;;chr12:86814833..86814846,+!p1@Fos!1.24!375.65!Fos;;chr11:90252223..90252240,-!p1@Hlf!1.24!132.92!Hlf;;chr1:193041811..193041838,-!p2@Atf3!1.23!15.98!Atf3;;chr6:53523358..53523388,+!p1@Creb5!1.22!182.73!Creb5;;chr19:46379199..46379301,+!p1@Nfkb2!1.22!87.03!Nfkb2;;chr16:3744192..3744206,+!p4@Zfp263!1.21!19.21!Zfp263;;chr1:52065530..52065548,+!p3@Stat4!1.19!14.62!Stat4;;chr12:56593574..56593592,-!p1@Nfkbia!1.18!720.88!Nfkbia;;chr4:48058047..48058062,+!p1@Nr4a3!1.18!21.76!Nr4a3;;chr6:108610428..108610440,+!p4@Bhlhe40!1.18!19.21!Bhlhe40;;chr19:43686789..43686811,+!p1@Nkx2-3!1.18!14.28!Nkx2-3;;chr15:79177964..79177986,+!p1@Maff!1.17!47.08!Maff;;chr4:94718879..94718898,-!p1@Jun!1.16!947.80!Jun;;chr17:45692642..45692663,+!p1@Nfkbie!1.16!43.17!Nfkbie;;chr3:30993974..30994045,+!p1@Skil!1.15!358.65!Skil;;chr11:53583544..53583559,+!p1@Irf1!1.15!217.91!Irf1;;chr4:124805092..124805135,-!p2@Zc3h12a!1.15!54.90!Zc3h12a;;chr7:31207408..31207450,+!p4@Nfkbid!1.15!21.42!Nfkbid;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.15!16.83!Zbtb11;;chr7:71083729..71083742,-!p4@Klf13!1.14!22.27!Klf13;;chr13:83663902..83663927,+!p1@Mef2c!1.13!300.86!Mef2c;;chr13:5860776..5860796,+!p1@Klf6!1.13!296.78!Klf6;;chr7:20214704..20214800,-!p1@Relb!1.13!41.30!Relb;;chr16:3744162..3744180,+!p2@Zfp263!1.13!34.17!Zfp263;;chr11:100683839..100683890,-!p2@Stat5b!1.13!29.24!Stat5b;;chr4:55545337..55545357,-!p1@Klf4!1.12!178.65!Klf4;;chr15:25914235..25914246,+!p5@Zfp622!1.12!12.24!Zfp622;;chr2:168781014..168781025,-!p4@LOC100502777,p4@Zfp64!1.12!12.07!Zfp64;;chr6:108610766..108610781,+!p2@Bhlhe40!1.11!21.59!Bhlhe40;;chr6:133986042..133986052,+!p7@Etv6!1.10!15.30!Etv6;;chr2:126501799..126501832,-!p4@Gabpb1!1.10!11.73!Gabpb1;;chr15:38230415..38230426,-!p2@Klf10!1.09!39.27!Klf10;;chr15:103085802..103085817,-!p4@Nfe2!1.09!14.11!Nfe2;;chr10:20880731..20880775,-!p2@Myb!1.08!23.12!Myb;;chr15:38230448..38230470,-!p1@Klf10!1.06!219.27!Klf10;;chr2:168781029..168781093,-!p2@LOC100502777,p2@Zfp64!1.06!36.21!Zfp64;;chr6:108610610..108610676,+!p1@Bhlhe40!1.05!501.44!Bhlhe40;;chr17:51971960..51971979,-!p1@Satb1!1.05!13.77!Satb1;;chr6:99216488..99216534,-!p2@Foxp1!1.04!28.56!Foxp1;;chr13:30841099..30841116,+!p1@Irf4!1.04!15.64!Irf4;;chr16:95680889..95680991,-!p1@Erg!1.03!80.74!Erg;;chr5:125538737..125538781,-!p2@Ncor2!1.03!35.70!Ncor2;;chr14:79915502..79915514,+!p4@Elf1!1.03!14.96!Elf1;;chr17:51971932..51971958,-!p2@Satb1!1.03!13.26!Satb1;;chr2:126501847..126501876,-!p5@Gabpb1!1.03!11.05!Gabpb1;;chr6:28348078..28348109,-!p5@Zfp800!1.01!9.18!Zfp800;;chr7:31208285..31208312,+!p3@Nfkbid!1.00!9.86!Nfkbid;;chr16:55838743..55838754,-!p6@Nfkbiz!1.00!9.01!Nfkbiz;;chr18:75527210..75527215,+!p4@Smad7!0.99!14.96!Smad7;;chr11:23671230..23671264,-!p6@Rel!0.99!8.84!Rel;;chr1:38721779..38721790,-!p6@Aff3!0.99!8.84!Aff3;;chr1:38721767..38721778,-!p5@Aff3!0.99!8.84!Aff3;;chr7:138553839..138553860,-!p2@Ikzf5!0.97!8.33!Ikzf5;;chr6:133985709..133985735,+!p5@Etv6!0.96!23.12!Etv6;;chr5:22940353..22940372,+!p3@Mll5!0.96!16.15!Mll5;;chr11:11585678..11585745,+!p5@Ikzf1!0.96!11.90!Ikzf1;;chr14:79915521..79915539,+!p5@Elf1!0.95!9.69!Elf1;;chr16:55838940..55838966,-!p5@Nfkbiz!0.95!8.84!Nfkbiz;;chr1:92949999..92950097,+!p1@Lrrfip1!0.94!210.09!Lrrfip1;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!0.94!56.94!Hmga1;;chr1:133904217..133904250,+!p5@Elk4!0.94!25.84!Elk4;;chr15:79178060..79178074,+!p2@Maff!0.94!10.20!Maff;;chr14:76904313..76904328,+!p1@Tsc22d1!0.93!1507.20!Tsc22d1;;chr13:5860872..5860883,+!p3@Klf6!0.93!15.30!Klf6;;chr13:83663868..83663894,+!p2@Mef2c!0.92!108.62!Mef2c;;chr11:100800641..100800669,-!p3@Stat3!0.92!12.92!Stat3;;chr15:79178029..79178044,+!p4@Maff!0.92!9.18!Maff;;chr6:88148650..88148669,+!p1@Gata2!0.91!62.55!Gata2;;chr2:126501197..126501245,-!p1@Gabpb1!0.91!56.94!Gabpb1;;chr17:44873393..44873418,-!p4@Runx2!0.91!12.58!Runx2;;chr4:134676555..134676575,+!p2@Runx3!0.91!7.14!Runx3;;chr8:73222830..73222844,+!p1@Jund!0.90!1809.25!Jund;;chr6:133985993..133986029,+!p2@Etv6!0.90!46.74!Etv6;;chr10:119913792..119913820,-!p5@Hmga2!0.90!12.24!Hmga2;;chr10:126727842..126727859,+!p1@Ddit3!0.89!206.01!Ddit3;;chr19:5637501..5637517,+!p4@Rela!0.89!29.07!Rela;;chr19:46380235..46380277,+!p3@Nfkb2!0.89!14.96!Nfkb2;;chr6:52176144..52176161,-!p2@Hoxa9!0.89!6.80!Hoxa9;;chr6:28347999..28348023,-!p3@Zfp800!0.88!6.63!Zfp800;;chr19:37509324..37509337,+!p1@Hhex!0.87!48.27!Hhex;;chr15:25914217..25914232,+!p3@Zfp622!0.87!12.58!Zfp622;;chr12:32635051..32635062,-!p2@Hbp1!0.87!9.52!Hbp1;;chr2:126501184..126501196,-!p6@Gabpb1!0.87!9.18!Gabpb1;;chr6:29479277..29479296,+!p2@Irf5!0.87!6.46!Irf5;;chr10:5734525..5734569,-!p3@Esr1!0.86!10.54!Esr1;;chr2:168780729..168780740,-!p3@LOC100502777,p3@Zfp64!0.86!6.29!Zfp64;;chr6:52163319..52163342,-!p1@Hoxa3!0.85!9.18!Hoxa3;;chr11:11585912..11585950,+!p6@Ikzf1!0.85!7.99!Ikzf1;;chr1:92950128..92950139,+!p4@Lrrfip1!0.85!6.12!Lrrfip1;;chr5:32438395..32438406,+!p3@Fosl2!0.84!9.18!Fosl2;;chr13:64254437..64254453,-!p4@Zfp367!0.84!8.16!Zfp367;;chr9:32348943..32349001,-!p1@Fli1!0.83!49.97!Fli1;;chr3:30995296..30995300,+!p6@Skil!0.83!7.31!Skil;;chr17:71200529..71200556,-!p1@Tgif1!0.82!97.40!Tgif1;;chr12:86940338..86940357,+!p1@Jdp2!0.82!58.98!Jdp2;;chr11:100721761..100721851,+!p1@Stat5a!0.82!44.02!Stat5a;;chrX:137077653..137077669,-!p3@Tsc22d3!0.82!26.86!Tsc22d3;;chr13:64254457..64254497,-!p1@Zfp367!0.82!26.69!Zfp367;;chr4:63064364..63064384,-!p1@Akna!0.82!17.34!Akna;;chr11:18918434..18918489,-!p3@Meis1!0.82!9.18!Meis1;;chr10:20880698..20880717,-!p3@Myb!0.82!9.18!Myb;;chr16:3872255..3872283,-!p4@Zfp597!0.82!8.50!Zfp597;;chr17:44872524..44872537,-!p9@Runx2!0.82!5.61!Runx2;;chr17:44873235..44873245,-!p17@Runx2!0.82!5.61!Runx2;;chr6:86619104..86619119,-!p1@Mxd1!0.81!47.76!Mxd1;;chr11:90250944..90250982,-!p2@Hlf!0.81!9.52!Hlf;;chr5:140267476..140267493,+!p1@Mafk!0.80!32.47!Mafk;;chr1:133904901..133904934,+!p3@Elk4!0.80!16.49!Elk4;;chr3:30408603..30408668,-!p1@Mecom!0.80!13.09!Mecom;;chr10:5734473..5734489,-!p5@Esr1!0.80!5.27!Esr1;;chr16:92826232..92826245,-!p4@Runx1!0.80!5.27!Runx1;;chr2:156665889..156665900,+!p8@Tgif2!0.80!5.27!Tgif2;;chr6:133985790..133985801,+!p8@Etv6!0.79!6.80!Etv6;;chr5:125538905..125538910,-!p4@Ncor2!0.79!6.80!Ncor2;;chr18:35020854..35020869,+!p1@Egr1!0.78!210.60!Egr1;;chr2:168415815..168415872,-!p1@Nfatc2!0.78!29.58!Nfatc2;;chr11:23978111..23978134,+!p3@Bcl11a!0.78!11.05!Bcl11a;;chr11:18918406..18918431,-!p6@Meis1!0.78!6.97!Meis1;;chr2:56976467..56976482,-!p4@Nr4a2!0.78!6.12!Nr4a2;;chr6:108610513..108610528,+!p3@Bhlhe40!0.77!7.82!Bhlhe40;;chr11:90251852..90251855,-!p4@Hlf!0.77!6.12!Hlf;;chr4:48058102..48058110,+!p5@Nr4a3!0.77!5.61!Nr4a3;;chr11:62272200..62272221,-!p11@Ncor1!0.77!4.93!Ncor1;;chr19:46379320..46379329,+!p9@Nfkb2!0.77!4.93!Nfkb2;;chr8:74842952..74842970,+!p1@Klf2!0.76!353.39!Klf2;;chr7:20408047..20408125,-!p1@Bcl3!0.76!60.34!Bcl3;;chr18:80909801..80909819,-!p1@Nfatc1!0.76!30.77!Nfatc1;;chr16:87699206..87699229,+!p3@Bach1!0.76!28.39!Bach1;;chr6:133986088..133986122,+!p4@Etv6!0.76!22.27!Etv6;;chr7:29551464..29551487,-!p2@Nfkbib!0.76!19.89!Nfkbib;;chr8:87225670..87225697,+!p2@Lyl1!0.76!15.13!Lyl1;;chr13:59924354..59924366,-!p3@Zcchc6!0.76!9.52!Zcchc6;;chr8:73222425..73222444,+!p2@Jund!0.76!4.76!Jund;;chr1:64579145..64579168,+!p6@Creb1!0.76!4.76!Creb1;;chr15:80085920..80085941,+!p1@Atf4!0.75!591.86!Atf4;;chr12:87027598..87027652,+!p1@Batf!0.75!11.39!Batf;;chr3:87329568..87329589,+!p2@Etv3!0.75!6.63!Etv3;;chr16:55838779..55838788,-!p9@Nfkbiz!0.75!4.59!Nfkbiz;;chr7:19895122..19895142,-!p4@Fosb!0.75!4.59!Fosb;;chr2:153475178..153475196,+!p1@Dnmt3b!0.74!10.37!Dnmt3b;;chr2:156665817..156665877,+!p1@Tgif2!0.73!31.28!Tgif2;;chr10:2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| ||
Line 44: | Line 44: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12534 | |library_id=CNhs12534 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs12534 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;12121 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;12121 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep1.CNhs12534.12121-128C6.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep1.CNhs12534.12121-128C6.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep1.CNhs12534.12121-128C6.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep1.CNhs12534.12121-128C6.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/stem%2520cell%2520%2528cKit%252b%2520Sca1-%2520lineage-%2529%2520KSL%252c%2520biol_rep1.CNhs12534.12121-128C6.mm9.nobarcode.rdna.fa.gz | |||
|name=stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1 | |name=stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12534,LSID920,release012,COMPLETED | |profile_hcage=CNhs12534,LSID920,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.11779559634038,0,0,0,0.0681778550615498,0,-0.110915766728332,0,0,0,0,-0.0843392403965415,0,0,0,0,0.0340889275307749,0,-0.0648025344363327,0,0.063545408223121,0,0,0,0,0,0,0,0,0,0,0.0340889275307749,0.0120798543569536,0,0,0,0,0,0.0559825348160931,-0.0698830085425867,-0.0952101329913158,-0.984211366477826,-0.0445816609873494,0,0,0,0,0,0,0,0,0,0,0,0,0.0610852688828016,0,0,0,0,-0.0146138841489735,0,0.00287663928084083,0,0,0,-0.0833008753775513,0.172185946795133,0.0208672927299553,-0.0171195879859991,0,0,-0.0858628359438951,0,0.431329067459534,0,-0.0588804989769108,-0.187938398532351,-0.52773702567902,0.0482592216063345,0,0,0,0,0,0,-0.256894241075405,-0.718487970135557,-0.235714074700624,0,0,0,0,0 | |repeat_enrich_byfamily=-0.11779559634038,0,0,0,0.0681778550615498,0,-0.110915766728332,0,0,0,0,-0.0843392403965415,0,0,0,0,0.0340889275307749,0,-0.0648025344363327,0,0.063545408223121,0,0,0,0,0,0,0,0,0,0,0.0340889275307749,0.0120798543569536,0,0,0,0,0,0.0559825348160931,-0.0698830085425867,-0.0952101329913158,-0.984211366477826,-0.0445816609873494,0,0,0,0,0,0,0,0,0,0,0,0,0.0610852688828016,0,0,0,0,-0.0146138841489735,0,0.00287663928084083,0,0,0,-0.0833008753775513,0.172185946795133,0.0208672927299553,-0.0171195879859991,0,0,-0.0858628359438951,0,0.431329067459534,0,-0.0588804989769108,-0.187938398532351,-0.52773702567902,0.0482592216063345,0,0,0,0,0,0,-0.256894241075405,-0.718487970135557,-0.235714074700624,0,0,0,0,0 | ||
Line 87: | Line 96: | ||
|top_motifs=NFKB1_REL_RELA:3.45089895814;NFE2:3.41355661119;CREB1:3.33597340918;ATF4:3.16602226277;ATF5_CREB3:2.9253258978;FOS_FOS{B,L1}_JUN{B,D}:2.87832912334;BACH2:2.77760068597;RUNX1..3:2.7567139838;FOXP3:2.58484488015;SPI1:2.3389845586;ELF1,2,4:2.3109926548;ETS1,2:2.30999303425;PAX8:2.27466805807;BPTF:2.26678499847;SPIB:2.03596735674;DMAP1_NCOR{1,2}_SMARC:2.02942479588;bHLH_family:1.92703905475;PAX2:1.65886678852;NFATC1..3:1.56146160836;POU2F1..3:1.48928197229;FOSL2:1.432851835;FOX{I1,J2}:1.40493812789;E2F1..5:1.36399329484;IRF1,2:1.31473699375;FOX{D1,D2}:1.27594194459;NFE2L1:1.18605270795;PPARG:1.17146815428;MYB:1.15381697274;AIRE:1.02472543244;ALX4:1.00822409417;ZNF384:0.992309656123;PBX1:0.982404114468;TBX4,5:0.971275244266;YY1:0.959022868421;ELK1,4_GABP{A,B1}:0.914607881938;ATF6:0.861681575386;CEBPA,B_DDIT3:0.817969901175;JUN:0.817900629564;ALX1:0.803745133751;STAT2,4,6:0.753997766559;HMX1:0.738523715862;ZBTB16:0.727426868179;ATF2:0.710795455845;SPZ1:0.67216959051;IRF7:0.659914689688;NKX6-1,2:0.591510364926;TEF:0.571998209539;NFIL3:0.544497744412;NANOG:0.541732151996;NANOG{mouse}:0.373895494879;HLF:0.363938452572;TFDP1:0.323912060068;SOX2:0.30461906161;POU5F1:0.300922178372;CRX:0.272533909544;STAT5{A,B}:0.247042341661;STAT1,3:0.236971229062;IKZF2:0.229528287073;HBP1_HMGB_SSRP1_UBTF:0.228382776189;NR6A1:0.208074580754;FOXN1:0.196589735627;TP53:0.187585076084;RXR{A,B,G}:0.174477844058;AHR_ARNT_ARNT2:0.165669066057;SOX17:0.159227338436;TLX2:0.15019831312;EGR1..3:0.147938681588;FOXQ1:0.0974104236334;PITX1..3:0.0882799173376;SREBF1,2:0.0623605434484;RFX2..5_RFXANK_RFXAP:0.0368270429323;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.033736832033;FOXD3:-0.0146983460444;HIF1A:-0.084761612939;NFE2L2:-0.0860745076405;NFY{A,B,C}:-0.149186192338;GATA6:-0.152485331336;PAX4:-0.161469523915;PDX1:-0.171842653325;HES1:-0.186582785105;FOXO1,3,4:-0.188749860077;MEF2{A,B,C,D}:-0.204872539467;FOXP1:-0.229253789271;TBP:-0.250042576889;ZIC1..3:-0.265563961696;FOXL1:-0.284487769069;SRF:-0.293502011872;NFIX:-0.316097171823;ONECUT1,2:-0.3215560328;FOX{F1,F2,J1}:-0.342845513951;RXRA_VDR{dimer}:-0.364119969477;AR:-0.368806297369;RFX1:-0.388611468769;GATA4:-0.392805852823;CDC5L:-0.401999534732;MTF1:-0.421118283841;NRF1:-0.425529160923;ESRRA:-0.42871553197;PAX5:-0.448340227545;ARID5B:-0.455038765055;TFCP2:-0.455065810419;BREu{core}:-0.464963138031;SP1:-0.471099345222;ESR1:-0.474316637486;RORA:-0.476226322719;ZNF148:-0.495096114607;NR1H4:-0.514427655096;HSF1,2:-0.583707603446;CUX2:-0.604163254648;PRDM1:-0.623487200128;MYOD1:-0.637029861349;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.639013434644;ZNF143:-0.643938329878;TFAP2B:-0.644570886245;MED-1{core}:-0.654334143218;NR5A1,2:-0.659013577258;ZBTB6:-0.669385277407;MAFB:-0.670114357057;NKX2-3_NKX2-5:-0.685837858474;OCT4_SOX2{dimer}:-0.690881388125;EVI1:-0.69177187856;DBP:-0.716775129647;HNF1A:-0.718688621213;ZFP161:-0.72663975092;PRRX1,2:-0.736589877581;HNF4A_NR2F1,2:-0.743434241915;MTE{core}:-0.757619237845;ZNF238:-0.795417909492;PAX6:-0.802399267837;MYFfamily:-0.810617791278;MZF1:-0.826800270101;TFAP2{A,C}:-0.829355891594;POU1F1:-0.835194007407;EP300:-0.848368394085;CDX1,2,4:-0.87038560468;HOX{A4,D4}:-0.872176697035;REST:-0.874551870704;NKX2-2,8:-0.877193001474;RBPJ:-0.88660906453;ZEB1:-0.887887155475;NHLH1,2:-0.908405356984;SOX5:-0.923243725538;LEF1_TCF7_TCF7L1,2:-0.944004823111;GFI1:-0.993910510919;LMO2:-1.01994266788;TGIF1:-1.02687909096;XCPE1{core}:-1.03150262433;SNAI1..3:-1.03533700039;PAX1,9:-1.05366281017;FOXA2:-1.05725135088;HAND1,2:-1.06829516418;RREB1:-1.08287965776;NKX2-1,4:-1.10081847227;GTF2A1,2:-1.11123322835;MAZ:-1.12019576602;SOX{8,9,10}:-1.16552553688;HIC1:-1.17780596757;EN1,2:-1.17865281971;EBF1:-1.22380613893;VSX1,2:-1.25327811572;MYBL2:-1.25700286894;GLI1..3:-1.26487526488;SMAD1..7,9:-1.30195539849;GZF1:-1.32918974496;POU3F1..4:-1.33152896317;T:-1.33721759266;GTF2I:-1.36697633234;NKX3-1:-1.37261113697;UFEwm:-1.41191647673;NR3C1:-1.43339907015;LHX3,4:-1.43465378274;TEAD1:-1.44138325655;PATZ1:-1.46555258019;GCM1,2:-1.47909480614;FOXM1:-1.48261726404;TLX1..3_NFIC{dimer}:-1.49526378565;ADNP_IRX_SIX_ZHX:-1.51773651741;TOPORS:-1.52311179349;POU6F1:-1.56014788766;KLF4:-1.56471783232;HOX{A5,B5}:-1.66288366874;TFAP4:-1.66892618163;ZNF423:-1.7004534693;HOXA9_MEIS1:-1.80194111253;TAL1_TCF{3,4,12}:-1.81945305093;GFI1B:-1.92647735644;HMGA1,2:-2.22709902286;IKZF1:-2.4453512626;NKX3-2:-2.4521277066 | |top_motifs=NFKB1_REL_RELA:3.45089895814;NFE2:3.41355661119;CREB1:3.33597340918;ATF4:3.16602226277;ATF5_CREB3:2.9253258978;FOS_FOS{B,L1}_JUN{B,D}:2.87832912334;BACH2:2.77760068597;RUNX1..3:2.7567139838;FOXP3:2.58484488015;SPI1:2.3389845586;ELF1,2,4:2.3109926548;ETS1,2:2.30999303425;PAX8:2.27466805807;BPTF:2.26678499847;SPIB:2.03596735674;DMAP1_NCOR{1,2}_SMARC:2.02942479588;bHLH_family:1.92703905475;PAX2:1.65886678852;NFATC1..3:1.56146160836;POU2F1..3:1.48928197229;FOSL2:1.432851835;FOX{I1,J2}:1.40493812789;E2F1..5:1.36399329484;IRF1,2:1.31473699375;FOX{D1,D2}:1.27594194459;NFE2L1:1.18605270795;PPARG:1.17146815428;MYB:1.15381697274;AIRE:1.02472543244;ALX4:1.00822409417;ZNF384:0.992309656123;PBX1:0.982404114468;TBX4,5:0.971275244266;YY1:0.959022868421;ELK1,4_GABP{A,B1}:0.914607881938;ATF6:0.861681575386;CEBPA,B_DDIT3:0.817969901175;JUN:0.817900629564;ALX1:0.803745133751;STAT2,4,6:0.753997766559;HMX1:0.738523715862;ZBTB16:0.727426868179;ATF2:0.710795455845;SPZ1:0.67216959051;IRF7:0.659914689688;NKX6-1,2:0.591510364926;TEF:0.571998209539;NFIL3:0.544497744412;NANOG:0.541732151996;NANOG{mouse}:0.373895494879;HLF:0.363938452572;TFDP1:0.323912060068;SOX2:0.30461906161;POU5F1:0.300922178372;CRX:0.272533909544;STAT5{A,B}:0.247042341661;STAT1,3:0.236971229062;IKZF2:0.229528287073;HBP1_HMGB_SSRP1_UBTF:0.228382776189;NR6A1:0.208074580754;FOXN1:0.196589735627;TP53:0.187585076084;RXR{A,B,G}:0.174477844058;AHR_ARNT_ARNT2:0.165669066057;SOX17:0.159227338436;TLX2:0.15019831312;EGR1..3:0.147938681588;FOXQ1:0.0974104236334;PITX1..3:0.0882799173376;SREBF1,2:0.0623605434484;RFX2..5_RFXANK_RFXAP:0.0368270429323;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.033736832033;FOXD3:-0.0146983460444;HIF1A:-0.084761612939;NFE2L2:-0.0860745076405;NFY{A,B,C}:-0.149186192338;GATA6:-0.152485331336;PAX4:-0.161469523915;PDX1:-0.171842653325;HES1:-0.186582785105;FOXO1,3,4:-0.188749860077;MEF2{A,B,C,D}:-0.204872539467;FOXP1:-0.229253789271;TBP:-0.250042576889;ZIC1..3:-0.265563961696;FOXL1:-0.284487769069;SRF:-0.293502011872;NFIX:-0.316097171823;ONECUT1,2:-0.3215560328;FOX{F1,F2,J1}:-0.342845513951;RXRA_VDR{dimer}:-0.364119969477;AR:-0.368806297369;RFX1:-0.388611468769;GATA4:-0.392805852823;CDC5L:-0.401999534732;MTF1:-0.421118283841;NRF1:-0.425529160923;ESRRA:-0.42871553197;PAX5:-0.448340227545;ARID5B:-0.455038765055;TFCP2:-0.455065810419;BREu{core}:-0.464963138031;SP1:-0.471099345222;ESR1:-0.474316637486;RORA:-0.476226322719;ZNF148:-0.495096114607;NR1H4:-0.514427655096;HSF1,2:-0.583707603446;CUX2:-0.604163254648;PRDM1:-0.623487200128;MYOD1:-0.637029861349;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.639013434644;ZNF143:-0.643938329878;TFAP2B:-0.644570886245;MED-1{core}:-0.654334143218;NR5A1,2:-0.659013577258;ZBTB6:-0.669385277407;MAFB:-0.670114357057;NKX2-3_NKX2-5:-0.685837858474;OCT4_SOX2{dimer}:-0.690881388125;EVI1:-0.69177187856;DBP:-0.716775129647;HNF1A:-0.718688621213;ZFP161:-0.72663975092;PRRX1,2:-0.736589877581;HNF4A_NR2F1,2:-0.743434241915;MTE{core}:-0.757619237845;ZNF238:-0.795417909492;PAX6:-0.802399267837;MYFfamily:-0.810617791278;MZF1:-0.826800270101;TFAP2{A,C}:-0.829355891594;POU1F1:-0.835194007407;EP300:-0.848368394085;CDX1,2,4:-0.87038560468;HOX{A4,D4}:-0.872176697035;REST:-0.874551870704;NKX2-2,8:-0.877193001474;RBPJ:-0.88660906453;ZEB1:-0.887887155475;NHLH1,2:-0.908405356984;SOX5:-0.923243725538;LEF1_TCF7_TCF7L1,2:-0.944004823111;GFI1:-0.993910510919;LMO2:-1.01994266788;TGIF1:-1.02687909096;XCPE1{core}:-1.03150262433;SNAI1..3:-1.03533700039;PAX1,9:-1.05366281017;FOXA2:-1.05725135088;HAND1,2:-1.06829516418;RREB1:-1.08287965776;NKX2-1,4:-1.10081847227;GTF2A1,2:-1.11123322835;MAZ:-1.12019576602;SOX{8,9,10}:-1.16552553688;HIC1:-1.17780596757;EN1,2:-1.17865281971;EBF1:-1.22380613893;VSX1,2:-1.25327811572;MYBL2:-1.25700286894;GLI1..3:-1.26487526488;SMAD1..7,9:-1.30195539849;GZF1:-1.32918974496;POU3F1..4:-1.33152896317;T:-1.33721759266;GTF2I:-1.36697633234;NKX3-1:-1.37261113697;UFEwm:-1.41191647673;NR3C1:-1.43339907015;LHX3,4:-1.43465378274;TEAD1:-1.44138325655;PATZ1:-1.46555258019;GCM1,2:-1.47909480614;FOXM1:-1.48261726404;TLX1..3_NFIC{dimer}:-1.49526378565;ADNP_IRX_SIX_ZHX:-1.51773651741;TOPORS:-1.52311179349;POU6F1:-1.56014788766;KLF4:-1.56471783232;HOX{A5,B5}:-1.66288366874;TFAP4:-1.66892618163;ZNF423:-1.7004534693;HOXA9_MEIS1:-1.80194111253;TAL1_TCF{3,4,12}:-1.81945305093;GFI1B:-1.92647735644;HMGA1,2:-2.22709902286;IKZF1:-2.4453512626;NKX3-2:-2.4521277066 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:12121-128C6;search_select_hide=table117:12121-128C6 | |||
}} | }} |
Latest revision as of 18:31, 4 June 2020
Name: | stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs12534 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs12534
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | -0.00139 |
1001 | -0.072 |
1002 | -0.116 |
1003 | -0.102 |
1004 | 0 |
1005 | 0 |
1006 | -0.143 |
1007 | -0.236 |
1008 | 0 |
1009 | -0.0273 |
101 | 0.235 |
1010 | 0 |
1011 | 0 |
1012 | 0.0682 |
1013 | -0.149 |
1014 | -0.0874 |
1015 | 0.0772 |
1016 | -0.282 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0.127 |
1020 | 0 |
1021 | 0 |
1022 | -0.111 |
1023 | 0.81 |
1024 | 1.012 |
1025 | -0.0611 |
1026 | 0 |
1027 | -0.048 |
1028 | 0 |
1029 | -0.115 |
103 | -0.0887 |
1030 | 0 |
1031 | -0.911 |
1032 | -0.28 |
1033 | 0.0682 |
1034 | 0 |
1035 | 0 |
1036 | 0.421 |
1037 | 0 |
1038 | -0.198 |
1039 | -0.0609 |
104 | 0 |
1040 | -0.121 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12534
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12534
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.936 |
10 | 10 | 0.174 |
100 | 100 | 0.884 |
101 | 101 | 0.554 |
102 | 102 | 0.917 |
103 | 103 | 0.532 |
104 | 104 | 0.564 |
105 | 105 | 0.624 |
106 | 106 | 0.0562 |
107 | 107 | 0.843 |
108 | 108 | 0.669 |
109 | 109 | 0.588 |
11 | 11 | 0.926 |
110 | 110 | 0.651 |
111 | 111 | 0.898 |
112 | 112 | 0.211 |
113 | 113 | 0.827 |
114 | 114 | 0.164 |
115 | 115 | 0.57 |
116 | 116 | 0.599 |
117 | 117 | 2.82009e-4 |
118 | 118 | 0.132 |
119 | 119 | 0.691 |
12 | 12 | 0.548 |
120 | 120 | 0.372 |
121 | 121 | 0.208 |
122 | 122 | 0.563 |
123 | 123 | 0.205 |
124 | 124 | 0.542 |
125 | 125 | 0.99 |
126 | 126 | 0.535 |
127 | 127 | 0.954 |
128 | 128 | 0.067 |
129 | 129 | 0.581 |
13 | 13 | 0.0017 |
130 | 130 | 0.507 |
131 | 131 | 0.212 |
132 | 132 | 0.339 |
133 | 133 | 0.336 |
134 | 134 | 0.879 |
135 | 135 | 0.689 |
136 | 136 | 0.14 |
137 | 137 | 0.00463 |
138 | 138 | 0.996 |
139 | 139 | 0.838 |
14 | 14 | 0.524 |
140 | 140 | 0.701 |
141 | 141 | 0.489 |
142 | 142 | 0.585 |
143 | 143 | 0.297 |
144 | 144 | 0.906 |
145 | 145 | 0.427 |
146 | 146 | 0.583 |
147 | 147 | 0.625 |
148 | 148 | 0.229 |
149 | 149 | 0.244 |
15 | 15 | 0.0956 |
150 | 150 | 0.776 |
151 | 151 | 0.717 |
152 | 152 | 0.27 |
153 | 153 | 0.211 |
154 | 154 | 0.503 |
155 | 155 | 0.666 |
156 | 156 | 0.0863 |
157 | 157 | 0.825 |
158 | 158 | 0.0308 |
159 | 159 | 0.787 |
160 | 160 | 0.11 |
161 | 161 | 0.323 |
162 | 162 | 0.337 |
163 | 163 | 0.0782 |
164 | 164 | 0.0384 |
165 | 165 | 0.0958 |
166 | 166 | 0.24 |
167 | 167 | 0.297 |
168 | 168 | 0.272 |
169 | 169 | 0.178 |
17 | 17 | 0.828 |
18 | 18 | 0.87 |
19 | 19 | 0.101 |
2 | 2 | 0.0187 |
20 | 20 | 0.0218 |
21 | 21 | 0.883 |
22 | 22 | 0.958 |
23 | 23 | 0.482 |
24 | 24 | 0.0402 |
25 | 25 | 0.59 |
26 | 26 | 0.0542 |
27 | 27 | 0.431 |
28 | 28 | 0.716 |
29 | 29 | 0.173 |
3 | 3 | 0.508 |
30 | 30 | 0.175 |
31 | 31 | 0.491 |
32 | 32 | 0.0403 |
33 | 33 | 0.156 |
34 | 34 | 0.677 |
35 | 35 | 0.997 |
36 | 36 | 0.152 |
37 | 37 | 0.0547 |
38 | 38 | 0.711 |
39 | 39 | 0.482 |
4 | 4 | 0.48 |
40 | 40 | 0.241 |
41 | 41 | 0.0859 |
42 | 42 | 0.608 |
43 | 43 | 0.975 |
44 | 44 | 0.953 |
45 | 45 | 0.709 |
46 | 46 | 0.814 |
47 | 47 | 0.588 |
48 | 48 | 0.749 |
49 | 49 | 0.847 |
5 | 5 | 0.806 |
50 | 50 | 0.663 |
51 | 51 | 0.743 |
52 | 52 | 0.78 |
53 | 53 | 0.78 |
54 | 54 | 0.594 |
55 | 55 | 0.957 |
56 | 56 | 0.969 |
57 | 57 | 0.665 |
58 | 58 | 0.267 |
59 | 59 | 0.814 |
6 | 6 | 0.829 |
60 | 60 | 0.451 |
61 | 61 | 0.394 |
62 | 62 | 0.277 |
63 | 63 | 0.692 |
64 | 64 | 0.603 |
65 | 65 | 0.923 |
66 | 66 | 0.472 |
67 | 67 | 0.8 |
68 | 68 | 0.367 |
69 | 69 | 0.588 |
7 | 7 | 0.584 |
70 | 70 | 0.427 |
71 | 71 | 0.201 |
72 | 72 | 0.514 |
73 | 73 | 0.0507 |
74 | 74 | 0.81 |
75 | 75 | 0.00732 |
76 | 76 | 0.0822 |
77 | 77 | 0.00899 |
78 | 78 | 0.261 |
79 | 79 | 0.547 |
8 | 8 | 0.965 |
80 | 80 | 0.81 |
81 | 81 | 0.769 |
82 | 82 | 0.166 |
83 | 83 | 0.0174 |
84 | 84 | 0.501 |
85 | 85 | 0.149 |
86 | 86 | 0.199 |
87 | 87 | 0.0316 |
88 | 88 | 0.423 |
89 | 89 | 0.33 |
9 | 9 | 0.689 |
90 | 90 | 0.262 |
91 | 91 | 0.518 |
92 | 92 | 0.731 |
93 | 93 | 0.166 |
94 | 94 | 0.886 |
95 | 95 | 0.00628 |
96 | 96 | 0.555 |
97 | 97 | 0.966 |
98 | 98 | 0.776 |
99 | 99 | 0.0421 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12534
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000021 hematopoietic stem cell sample
FF:0000103 mouse sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000021 (hematopoietic stem cell sample)
0000103 (mouse sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA