FF:1308-22E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004923 | ||
|accession_numbers=CAGE;DRX009073;DRR009947;DRZ001372;DRZ002755;DRZ012722;DRZ014105 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000007,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002530,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000304,FF:0011507 | |||
|comment=fantom:1308-22E9 | |comment=fantom:1308-22E9 | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:65520838..65520853,+!p1@ENSMUST00000004964!2.05!112.04!Pou1f1;;chr2:26062055..26062100,-!p1@Lhx3!1.86!70.64!Lhx3;;chr13:55932591..55932622,-!p1@Pitx1!1.78!71.24!Pitx1;;chr13:99124189..99124205,+!p1@Foxd1!1.76!84.64!Foxd1;;chr12:74147689..74147711,-!p1@Six1!1.67!98.34!Six1;;chr12:74040895..74040916,+!p2@Six6!1.60!38.67!Six6;;chr10:86956396..86956411,-!p1@Ascl1!1.51!47.80!Ascl1;;chr12:74040861..74040875,+!p1@Six6!1.51!31.66!Six6;;chr5:38215819..38215823,-!p1@Msx1!1.49!77.03!Msx1;;chr17:86020510..86020589,+!p3@Six3!1.47!28.62!Six3;;chr2:146047829..146047847,+!p1@Insm1!1.44!46.89!Insm1;;chr17:86087592..86087615,-!p1@Six2!1.40!24.36!Six2;;chr3:128916868..128916890,+!p1@Pitx2!1.36!29.84!Pitx2;;chr1:167090803..167090816,-!p1@Tbx19!1.30!19.18!Tbx19;;chr3:34548909..34548927,+!p1@Sox2!1.26!29.23!Sox2;;chr12:34642510..34642530,+!p1@Twist1!1.24!51.45!Twist1;;chr17:86020156..86020183,+!p1@Six3!1.24!16.44!Six3;;chr4:109650609..109650653,+!p1@Dmrta2!1.23!15.83!Dmrta2;;chr13:31898637..31898653,+!p2@Foxc1!1.22!27.71!Foxc1;;chr18:66098702..66098742,-!p1@Rax!1.22!15.53!Rax;;chr13:55932624..55932641,-!p2@Pitx1!1.21!15.22!Pitx1;;chr3:128917187..128917223,+!p2@Pitx2!1.19!17.05!Pitx2;;chr17:86020115..86020128,+!p2@Six3!1.16!13.40!Six3;;chr14:122874619..122874634,+!p1@Zic2!1.15!13.09!Zic2;;chr19:19185671..19185693,-!p1@Rorb!1.08!26.49!Rorb;;chr5:138199361..138199441,+!p2@Tsc22d4!1.08!21.01!Tsc22d4;;chr7:17647736..17647772,-!p1@Hif3a!1.07!38.06!Hif3a;;chr10:22539932..22539956,-!p1@Tcf21!1.07!28.62!Tcf21;;chr8:123640063..123640077,+!p1@Foxc2!1.07!19.49!Foxc2;;chr10:129717274..129717298,-!p1@Neurod4!1.07!10.66!Neurod4;;chr13:31717548..31717596,+!p1@Foxf2!1.06!21.01!Foxf2;;chr17:86012772..86012825,+!p4@Six3!1.04!10.05!Six3;;chr2:79296783..79296801,-!p1@Neurod1!1.04!10.05!Neurod1;;chr2:147190749..147190769,+!p1@Pax1!1.03!9.74!Pax1;;chr13:31898767..31898785,+!p4@Foxc1!1.02!11.57!Foxc1;;chrX:58146612..58146615,-!p1@Sox3!1.02!9.44!Sox3;;chr9:55388997..55389016,+!p1@Isl2!1.01!9.13!Isl2;;chr13:31898729..31898761,+!p1@Foxc1!1.00!22.53!Foxc1;;chr18:35020854..35020869,+!p1@Egr1!0.99!343.74!Egr1;;chr18:52775562..52775650,+!p1@Zfp474!0.98!8.53!Zfp474;;chr11:50767247..50767270,-!p1@Prop1!0.98!8.53!Prop1;;chr10:12810631..12810649,+!p1@Plagl1!0.97!225.00!Plagl1;;chr16:15887371..15887385,+!p1@Cebpd!0.96!286.81!Cebpd;;chr8:12395603..12395621,+!p1@Sox1!0.96!8.22!Sox1;;chr2:26063801..26063813,-!p2@Lhx3!0.96!8.22!Lhx3;;chr3:128916838..128916856,+!p4@Pitx2!0.96!8.22!Pitx2;;chr4:139388835..139388867,-!p1@Pax7!0.95!7.92!Pax7;;chr17:86020336..86020352,+!p8@Six3!0.95!7.92!Six3;;chr1:169528457..169528482,+!p3@Rxrg!0.95!7.92!Rxrg;;chr1:169528581..169528607,+!p7@Rxrg!0.94!7.61!Rxrg;;chr9:91260594..91260612,-!p1@Zic1!0.94!7.61!Zic1;;chr10:84218800..84218829,+!p2@Rfx4!0.94!7.61!Rfx4;;chr3:128902837..128902861,+!p3@Pitx2!0.92!7.31!Pitx2;;chr16:65521021..65521032,+!p@chr16:65521021..65521032,+!0.92!7.31!Pou1f1;;chr3:107398056..107398082,+!p1@Alx3!0.90!7.00!Alx3;;chr14:104867201..104867258,-!p1@Pou4f1!0.89!9.74!Pou4f1;;chr6:90412582..90412601,+!p1@Klf15!0.87!32.27!Klf15;;chr2:31495237..31495243,+!p1@Prdm12!0.87!6.39!Prdm12;;chr10:84218895..84218909,+!p1@Rfx4!0.87!6.39!Rfx4;;chr6:90412608..90412630,+!p2@Klf15!0.86!13.40!Klf15;;chr9:48644306..48644364,-!p1@Zbtb16!0.85!25.58!Zbtb16;;chr1:169528491..169528505,+!p4@Rxrg!0.85!6.09!Rxrg;;chr17:86020468..86020504,+!p6@Six3!0.85!6.09!Six3;;chr2:38206744..38206766,+!p1@Lhx2!0.84!7.31!Lhx2;;chr3:34548946..34548972,+!p2@Sox2!0.84!6.70!Sox2;;chr13:117099847..117099907,-!p1@Isl1!0.83!10.96!Isl1;;chr19:59245978..59245982,-!p1@Vax1!0.83!5.78!Vax1;;chr9:48644037..48644067,-!p2@Zbtb16!0.82!14.61!Zbtb16;;chr1:120879128..120879183,-!p3@Gli2!0.82!11.27!Gli2;;chr2:127347067..127347093,-!p1@Kcnip3!0.82!9.74!Kcnip3;;chr19:19185697..19185711,-!p2@Rorb!0.82!7.31!Rorb;;chr11:98636508..98636524,-!p3@Nr1d1!0.82!7.00!Nr1d1;;chr8:87502608..87502623,-!p1@Junb!0.81!96.52!Junb;;chr15:101097270..101097290,+!p1@Nr4a1!0.81!60.28!Nr4a1;;chr1:137155026..137155042,-!p1@Elf3!0.81!33.80!Elf3;;chr11:121380594..121380609,-!p2@Zfp750!0.81!9.74!Zfp750;;chr2:146911200..146911219,-!p1@Nkx2-4!0.81!5.48!Nkx2-4;;chr6:30908793..30908815,-!p1@Klf14!0.81!5.48!Klf14;;chr14:49287186..49287225,-!p1@Otx2!0.81!5.48!Otx2;;chr9:98855692..98855710,+!p2@Foxl2!0.81!5.48!Foxl2;;chr13:31898496..31898519,+!p3@Foxc1!0.80!8.83!Foxc1;;chr13:55937467..55937516,-!p3@Pitx1!0.79!5.18!Pitx1;;chr1:169528433..169528456,+!p10@Rxrg!0.79!5.18!Rxrg;;chr1:169528720..169528749,+!p6@Rxrg!0.79!5.18!Rxrg;;chr10:129717308..129717319,-!p2@Neurod4!0.79!5.18!Neurod4;;chr7:6649134..6649167,-!p1@Zim1!0.78!29.84!Zim1;;chr7:52963269..52963305,+!p4@Dbp!0.78!7.31!Dbp;;chr8:123640090..123640101,+!p2@Foxc2!0.78!5.78!Foxc2;;chr11:98636531..98636559,-!p1@Nr1d1!0.77!30.45!Nr1d1;;chrX:137135036..137135064,-!p4@Tsc22d3!0.77!10.05!Tsc22d3;;chr2:127347094..127347111,-!p2@Kcnip3!0.77!8.53!Kcnip3;;chr17:86020293..86020318,+!p7@Six3!0.77!4.87!Six3;;chr13:55937432..55937460,-!p4@Pitx1!0.77!4.87!Pitx1;;chr3:94176733..94176794,+!p1@Rorc!0.75!39.28!Rorc;;chr4:114581497..114581519,-!p2@Foxd2!0.75!4.57!Foxd2;;chr17:86020137..86020149,+!p5@Six3!0.75!4.57!Six3;;chr1:169528520..169528542,+!p2@Rxrg!0.75!4.57!Rxrg;;chr2:147190725..147190747,+!p2@Pax1!0.75!4.57!Pax1;;chr11:90252223..90252240,-!p1@Hlf!0.74!41.71!Hlf;;chr15:78994907..78994926,-!p1@Sox10!0.74!12.48!Sox10;;chr7:116154364..116154444,+!p1@Tub!0.74!8.22!Tub;;chr16:91270004..91270023,+!p1@Olig1!0.74!5.18!Olig1;;chr3:95032091..95032183,-!p1@Mllt11!0.72!40.80!Mllt11;;chr5:144951153..144951203,+!p1@Bhlha15!0.72!6.39!Bhlha15;;chr14:122874593..122874610,+!p2@Zic2!0.72!4.26!Zic2;;chr2:163028808..163028869,+!p1@Tox2!0.70!16.14!Tox2;;chr17:86020186..86020195,+!p9@Six3!0.70!3.96!Six3;;chr13:31717597..31717613,+!p2@Foxf2!0.70!3.96!Foxf2;;chr4:139389439..139389450,-!p3@Pax7!0.70!3.96!Pax7;;chr14:56443806..56443848,+!p1@Nfatc4!0.69!8.53!Nfatc4;;chr16:18587076..18587106,-!p1@Tbx1!0.69!5.78!Tbx1;;chr2:25562263..25562314,+!p2@Bmyc!0.68!16.44!Bmyc;;chr10:80870405..80870428,-!p4@Nfic!0.68!11.27!Nfic;;chr7:148008023..148008092,-!p1@Zfp941!0.67!9.74!Zfp941;;chr7:17642053..17642066,-!p2@Hif3a!0.67!5.48!Hif3a;;chr9:91260616..91260653,-!p2@Zic1!0.67!3.65!Zic1;;chr15:79178559..79178584,+!p8@Maff!0.67!3.65!Maff;;chr7:52960555..52960662,+!p1@Dbp!0.66!35.32!Dbp;;chr11:98636575..98636607,-!p2@Nr1d1!0.66!14.92!Nr1d1;;chr2:25562315..25562344,+!p3@Bmyc!0.66!13.40!Bmyc;;chr2:152223881..152223933,-!p3@Sox12!0.66!13.40!Sox12;;chr11:90250944..90250982,-!p2@Hlf!0.66!6.39!Hlf;;chr11:85646303..85646329,+!p1@Tbx2!0.65!26.79!Tbx2;;chr4:119960301..119960359,-!p1@Foxo6!0.64!12.48!Foxo6;;chr7:17642018..17642045,-!p4@Hif3a!0.64!3.96!Hif3a;;chr3:34549096..34549111,+!p3@Sox2!0.64!3.35!Sox2;;chr9:99776566..99776612,-!p1@Sox14!0.64!3.35!Sox14;;chr1:167090905..167090912,-!p2@Tbx19!0.64!3.35!Tbx19;;chr1:167090920..167090924,-!p3@Tbx19!0.64!3.35!Tbx19;;chr12:74040716..74040745,+!p3@Six6!0.64!3.35!Six6;;chr8:87297280..87297326,-!p2@Nfix!0.63!8.53!Nfix;;chr14:55711114..55711159,-!p2@Zfhx2!0.63!8.22!Zfhx2;;chr6:88148650..88148669,+!p1@Gata2!0.62!31.66!Gata2;;chr12:34642682..34642753,+!p2@Twist1!0.62!9.44!Twist1;;chr2:38206580..38206600,+!p2@Lhx2!0.61!3.96!Lhx2;;chr2:181501745..181501778,+!p1@Myt1!0.61!3.04!Myt1;;chr2:127347042..127347058,-!p3@Kcnip3!0.61!3.04!Kcnip3;;chr1:6720216..6720232,+!p1@St18!0.61!3.04!St18;;chr6:83020355..83020371,-!p1@Tlx2!0.61!3.04!Tlx2;;chr13:99124236..99124243,+!p2@Foxd1!0.61!3.04!Foxd1;;chr13:55932739..55932756,-!p5@Pitx1!0.61!3.04!Pitx1;;chr2:25562346..25562433,+!p1@Bmyc!0.60!65.76!Bmyc;;chr8:72356532..72356611,+!p1@Pbx4!0.60!14.61!Pbx4;;chr4:99322820..99322845,+!p1@Foxd3!0.60!3.96!Foxd3;;chr19:23215673..23215753,+!p1@Klf9!0.59!50.85!Klf9;;chr2:130120884..130120972,+!p1@Ebf4!0.59!20.40!Ebf4;;chr19:9016975..9017004,+!p2@Mta2!0.59!10.05!Mta2;;chr3:99057269..99057306,+!p1@Tbx15!0.59!3.65!Tbx15;;chr19:28754692..28754757,-!p1@Glis3!0.58!14.01!Glis3;;chr14:17407970..17408015,-!p2@Rarb!0.58!8.83!Rarb;;chr4:128483731..128483757,-!p4@Zfp362!0.58!7.31!Zfp362;;chr14:55711198..55711258,-!p1@Zfhx2!0.57!18.88!Zfhx2;;chr10:126778916..126778974,-!p1@Gli1!0.57!7.00!Gli1;;chr11:116196664..116196679,-!p1@Foxj1!0.57!4.57!Foxj1;;chr14:17407549..17407575,-!p3@Rarb!0.57!4.57!Rarb;;chr8:24780125..24780143,+!p1@Zmat4!0.57!4.26!Zmat4;;chr6:108610428..108610440,+!p4@Bhlhe40!0.57!3.96!Bhlhe40;;chr15:103164702..103164778,-!p3@Zfp385a!0.57!3.35!Zfp385a;;chr17:48015839..48015915,-!p3@Foxp4!0.57!3.35!Foxp4;;chr14:52948124..52948148,-!p7@Sall2!0.57!2.74!Sall2;;chr12:30219426..30219506,+!p2@Myt1l!0.57!2.74!Myt1l;;chr1:169528551..169528569,+!p8@Rxrg!0.57!2.74!Rxrg;;chr2:181501988..181502026,+!p3@Myt1!0.57!2.74!Myt1;;chr9:98855847..98855866,+!p3@Foxl2!0.57!2.74!Foxl2;;chr4:128483347..128483411,-!p2@Zfp362!0.56!24.36!Zfp362;;chr17:28314341..28314394,+!p2@Zfp523!0.56!18.88!Zfp523;;chr17:56970339..56970428,-!p1@Rfx2!0.56!9.74!Rfx2;;chr18:3281750..3281776,-!p2@Crem!0.56!6.09!Crem;;chr11:121380640..121380655,-!p1@Zfp750!0.56!4.87!Zfp750;;chr7:19895354..19895369,-!p1@Fosb!0.56!3.96!Fosb;;chr14:56443781..56443800,+!p3@Nfatc4!0.56!3.65!Nfatc4;;chr4:150503457..150503498,-!p3@Camta1!0.56!3.04!Camta1;;chr7:6683123..6683142,-!p1@Peg3!0.55!169.89!Peg3;;chr12:86814833..86814846,+!p1@Fos!0.55!75.51!Fos;;chr7:5003117..5003159,+!p1@Zfp580!0.55!23.75!Zfp580;;chr4:149862477..149862553,+!p3@Rere!0.55!10.96!Rere;;chr9:63869729..63869749,-!p4@Smad6!0.55!5.78!Smad6;;chr3:52072329..52072346,+!p1@Foxo1!0.54!48.11!Foxo1;;chr7:4866804..4866832,+!p1@Zfp628!0.54!34.71!Zfp628;;chr3:52072296..52072310,+!p3@Foxo1!0.54!15.53!Foxo1;;chr7:130644017..130644092,-!p1@Zkscan2!0.54!5.48!Zkscan2;;chr5:120120667..120120685,+!p3@Tbx3!0.54!5.48!Tbx3;;chr12:74214394..74214422,-!p1@Six4!0.54!3.65!Six4;;chr2:30700857..30700873,+!p3@Prrx2!0.54!3.65!Prrx2;;chr10:5636374..5636421,-!p1@Esr1!0.54!3.35!Esr1;;chr11:90250894..90250916,-!p5@Hlf!0.54!2.44!Hlf;;chr11:90252071..90252093,-!p7@Hlf!0.54!2.44!Hlf;;chr1:173987720..173987729,-!p1@Nhlh1!0.54!2.44!N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chr7:25101609..25101678,-!p1@Zfp94!0.33!6.39!Zfp94;;chr18:55150248..55150308,-!p6@Zfp608!0.33!3.96!Zfp608;;chr6:92042363..92042413,+!p3@Nr2c2!0.33!3.96!Nr2c2;;chr17:47874123..47874156,+!p2@Tfeb!0.33!3.65!Tfeb;;chr5:122500142..122500167,-!p2@Cux2!0.33!3.35!Cux2;;chr18:60720468..60720472,+!p2@Rbm22!0.33!3.04!Rbm22;;chr11:85646469..85646488,+!p5@Tbx2!0.33!2.13!Tbx2;;chr7:52071034..52071052,-!p2@Atf5!0.33!1.83!Atf5;;chr7:25292118..25292129,+!p8@Zfp428!0.33!1.52!Zfp428;;chr4:133312695..133312709,-!p19@Arid1a!0.33!1.52!Arid1a;;chr11:98636568..98636574,-!p9@Nr1d1!0.33!1.52!Nr1d1;;chr8:74842952..74842970,+!p1@Klf2!0.32!128.18!Klf2;;chr16:4594740..4594759,+!p1@Glis2!0.32!21.01!Glis2;;chr6:47827642..47827707,+!p1@Zfp282!0.32!19.49!Zfp282;;chr12:86940338..86940357,+!p1@Jdp2!0.32!17.96!Jdp2;;chr10:79862134..79862173,-!p3@Mbd3!0.32!14.61!Mbd3;;chr7:77511234..77511302,-!p2@Nr2f2!0.32!11.87!Nr2f2;;chr3:8666963..8666978,-!p1@Hey1!0.32!11.57!Hey1;;chr10:80893711..80893784,-!p3@Nfic!0.32!9.13!Nfic;;chr10:41996550..41996569,-!p2@Foxo3!0.32!7.92!Foxo3;;chr18:83080305..83080335,+!p2@Zfp516!0.32!5.18!Zfp516;;chr14:52898807..52898863,+!p2@Tox4!0.32!4.87!Tox4;;chr9:63869751..63869767,-!p1@Smad6!0.32!4.26!Smad6;;chr9:63869802..63869815,-!p3@Smad6!0.32!3.04!Smad6;;chr4:133276779..133276796,-!p8@Arid1a!0.32!3.04!Arid1a;;chr11:3190303..3190351,+!p3@Patz1!0.32!3.04!Patz1;;chr12:85534720..85534751,-!p4@C130039O16Rik!0.32!2.74!C130039O16Rik;;chr5:32438395..32438406,+!p3@Fosl2!0.32!2.13!Fosl2;;chr1:165243591..165243625,-!p2@Prrx1!0.32!2.13!Prrx1;;chr3:8667033..8667046,-!p3@Hey1!0.32!1.83!Hey1;;chr7:52960700..52960719,+!p2@Dbp!0.32!1.52!Dbp;;chr11:101646155..101646170,-!p3@Etv4!0.32!1.52!Etv4;;chr15:81641878..81641921,+!p1@Tef!0.31!47.50!Tef;;chr15:99532709..99532743,+!p1@Smarcd1!0.31!47.50!Smarcd1;;chr2:91864661..91864686,-!p1@Creb3l1!0.31!39.58!Creb3l1;;chr6:47998498..47998527,-!p1@Zfp777!0.31!29.84!Zfp777;;chr2:168780757..168780805,-!p1@LOC100502777,p1@Zfp64!0.31!25.88!Zfp64;;chr7:120351014..120351109,+!p1@Arntl!0.31!24.97!Arntl;;chr11:5420954..5420969,+!p2@Xbp1!0.31!22.53!Xbp1;;chr10:80893549..80893590,-!p2@Nfic!0.31!20.40!Nfic;;chr7:71083876..71083932,-!p2@Klf13!0.31!14.01!Klf13;;chr9:122832168..122832210,+!p1@Zfp105!0.31!13.70!Zfp105;;chr7:26052688..26052742,+!p1@Cic!0.31!12.18!Cic;;chr16:17530781..17530882,-!p2@Thap7!0.31!10.35!Thap7;;chr15:76709732..76709764,+!p1@Zfp7!0.31!8.22!Zfp7;;chr10:92773818..92773906,-!p2@Elk3!0.31!8.22!Elk3;;chr7:134170541..134170569,-!p9@Maz!0.31!6.39!Maz;;chr2:56967334..56967366,-!p1@Nr4a2!0.31!3.04!Nr4a2;;chr9:106356278..106356292,+!p3@Pcbp4!0.31!2.44!Pcbp4;;chr8:87237732..87237745,-!p7@Nfix!0.31!2.13!Nfix;;chr16:50429979..50429997,-!p4@Bbx!0.31!2.13!Bbx;;chr14:67853457..67853482,+!p2@Ebf2!0.31!1.83!Ebf2;;chr18:39649174..39649196,-!p5@Nr3c1!0.31!1.52!Nr3c1;;chr15:81633224..81633235,+!p5@Tef!0.31!1.52!Tef;;chr7:25292246..25292259,+!p6@Zfp428!0.31!1.52!Zfp428;;chr5:125659525..125659599,-!p1@Ncor2!0.30!109.61!Ncor2;;chr8:87324243..87324277,-!p1@Nfix!0.30!42.93!Nfix;;chr9:106356211..106356242,+!p1@Pcbp4!0.30!34.71!Pcbp4;;chr17:33766023..33766059,+!p1@Zfp414!0.30!27.10!Zfp414;;chr7:134758740..134758783,-!p1@Zfp629!0.30!25.27!Zfp629;;chr7:134376741..134376831,+!p1@Zfp553!0.30!23.14!Zfp553;;chr11:59319701..59319741,-!p1@Zkscan17!0.30!20.40!Zkscan17;;chrX:98449492..98449510,+!p1@Foxo4!0.30!18.57!Foxo4;;chr8:72662999..72663031,-!p1@LOC100048268,p1@Rfxank!0.30!14.61!Rfxank;;chr14:56223010..56223067,+!p1@Irf9!0.30!13.70!Irf9;;chr7:71083428..71083518,-!p3@Klf13!0.30!13.09!Klf13;;chr14:76904356..76904367,+!p3@Tsc22d1!0.30!12.48!Tsc22d1;;chr1:64168830..64168895,-!p2@Klf7!0.30!11.27!Klf7;;chr7:30568977..30569047,+!p1@Zfp30!0.30!9.44!Zfp30;;chr19:28086045..28086080,-!p4@Rfx3!0.30!7.92!Rfx3;;chr2:152223441..152223465,-!p2@Sox12!0.30!6.70!Sox12;;chr7:134592623..134592680,-!p1@Zfp689!0.30!6.39!Zfp689;;chr6:14851287..14851342,+!p1@Foxp2!0.30!5.18!Foxp2;;chr3:5218629..5218684,+!p1@Zfhx4!0.30!5.18!Zfhx4;;chr11:101646566..101646603,-!p1@Etv4!0.30!5.18!Etv4;;chr11:5761871..5761882,+!p3@Aebp1!0.30!3.96!Aebp1;;chr17:25151251..25151279,-!p4@Cramp1l!0.30!2.44!Cramp1l;;chr5:9161608..9161619,-!p3@Dmtf1!0.30!2.13!Dmtf1;;chr6:14851250..14851277,+!p4@Foxp2!0.30!1.52!Foxp2;;chr7:52960730..52960762,+!p3@Dbp!0.30!1.52!Dbp;;chr9:31720843..31720888,-!p1@Barx2!0.30!1.22!Barx2;;chr2:167514456..167514473,+!p1@Cebpb!0.29!78.86!Cebpb;;chr2:27532754..27532815,+!p1@Rxra!0.29!51.15!Rxra;;chr7:134170081..134170122,-!p2@Maz!0.29!31.66!Maz;;chr15:81575569..81575599,+!p2@Zc3h7b!0.29!19.18!Zc3h7b;;chr2:165213745..165213815,-!p1@Zfp334!0.29!15.22!Zfp334;;chr7:17200307..17200370,-!p2@Grlf1!0.29!12.48!Grlf1;;chr13:56804721..56804792,+!p2@Smad5!0.29!8.53!Smad5;;chr8:79426176..79426275,+!p1@Nr3c2!0.29!8.22!Nr3c2;;chr17:27693788..27693803,+!p3@Hmga1,p4@Hmga1-rs1!0.29!7.31!Hmga1;;chr4:151401741..151401793,-!p1@Zbtb48!0.29!7.00!Zbtb48;;chr10:79390075..79390115,+!p2@Arid3a!0.29!5.18!Arid3a;;chrX:70587926..70587945,+!p2@Zfp275!0.29!5.18!Zfp275;;chr12:39507680..39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| |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316,FF:0000294 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 42: | ||
|has_quality= | |has_quality= | ||
|id=FF:1308-22E9 | |id=FF:1308-22E9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011507 | ||
|is_obsolete= | |||
|library_id=CNhs11190 | |||
|library_id_phase_based=2:CNhs11190 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1308 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1308 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pituitary%2520gland%252c%2520neonate%2520N00.CNhs11190.1308-22E9.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pituitary%2520gland%252c%2520neonate%2520N00.CNhs11190.1308-22E9.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pituitary%2520gland%252c%2520neonate%2520N00.CNhs11190.1308-22E9.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pituitary%2520gland%252c%2520neonate%2520N00.CNhs11190.1308-22E9.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pituitary%2520gland%252c%2520neonate%2520N00.CNhs11190.1308-22E9.mm9.nobarcode.rdna.fa.gz | |||
|name=pituitary gland, neonate N00 | |name=pituitary gland, neonate N00 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 41: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11190,LSID746,release008,COMPLETED | |profile_hcage=CNhs11190,LSID746,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.0808229107741237,0,0,0,0,0,-0.225944453781503,0,0,0,0,0.0310931737329704,0,0,0,0,0,0,-0.0764609367530626,0,0,0,0,0,0.115432414129512,0,0,0,0,0,0,0,-0.442990378194519,0,0,0,0,0.0156142478736827,0.119592585253961,0.20207149809696,-0.0239750936165377,0.135657842821677,0.498875928971012,0,0,0,0,0,0,0,0,0,0,0.281804600099495,0,0.33579545304434,0.115432414129512,0,0,0,0,0,0,0,0,0,-0.0870100065676679,-0.0288460572398916,-0.0426586286415706,0.0211234980679025,0,0,0.0657313460545639,0.14031474140774,0,0,0,0.0882824610253434,0.354259498463255,-0.0788315948399074,0,0,0,0,0,0,0.510413439923369,0.914685647924334,0.520369151988338,0,0,0,0,0 | |||
|rna_box=22 | |rna_box=22 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 53: | Line 73: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id= | |rna_tube_id=2.20E+10 | ||
|rna_weight_ug= | |rna_weight_ug= | ||
|sample_age= | |sample_age= | ||
|sample_category=developmental | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 75: | Line 96: | ||
|sample_tissue=pituitary gland | |sample_tissue=pituitary gland | ||
|top_motifs=GCM1,2:2.73962230528;TBX4,5:2.59529860541;RXRA_VDR{dimer}:2.45051692024;ATF6:2.34759287572;AR:2.1276936666;ZIC1..3:1.85998775508;RXR{A,B,G}:1.73063930514;EP300:1.60869833208;GLI1..3:1.59909419513;EBF1:1.51253638938;ARID5B:1.50764122233;ESR1:1.45594256865;RFX1:1.44577593493;LHX3,4:1.42358067495;HAND1,2:1.37734480808;MYOD1:1.28267332811;RFX2..5_RFXANK_RFXAP:1.24686598851;PATZ1:1.22297182152;SOX{8,9,10}:1.20009153687;HIC1:1.18322282053;XCPE1{core}:1.18025565925;EGR1..3:1.15616791572;TOPORS:1.12684625403;FOX{D1,D2}:1.12102526952;LMO2:1.11806509202;REST:1.09492625185;RREB1:1.05886650644;FOXO1,3,4:1.05632954908;GTF2I:1.04900616438;SMAD1..7,9:1.04623228594;TFAP2{A,C}:1.01370421406;SP1:1.01368137974;PAX5:1.01040400445;TFAP2B:1.00860882118;TFCP2:0.972892920431;ZNF423:0.933996316884;ZNF238:0.930520076683;MAZ:0.91540263654;STAT2,4,6:0.874244171352;MED-1{core}:0.822801025609;TLX1..3_NFIC{dimer}:0.772588539715;NHLH1,2:0.764192899083;TFAP4:0.749088851069;MTF1:0.747969306918;ATF2:0.729789375006;SOX5:0.709599024122;POU2F1..3:0.703621090866;PAX2:0.695994569859;CREB1:0.679888099936;SNAI1..3:0.678293570027;JUN:0.660333460237;HES1:0.656714308127;KLF4:0.625811731803;FOXQ1:0.624364832074;FOXP3:0.569693291758;ZNF384:0.553665186985;ADNP_IRX_SIX_ZHX:0.551422751719;ZNF148:0.529391554461;PAX6:0.519525247178;MYBL2:0.508745028472;ZBTB6:0.508138468938;GTF2A1,2:0.503559355857;ZEB1:0.50190375694;HOXA9_MEIS1:0.493231396277;ZFP161:0.485519687626;MTE{core}:0.484591761387;AHR_ARNT_ARNT2:0.474200002597;MYFfamily:0.448406150233;FOXN1:0.442409593673;SOX2:0.439016367971;HBP1_HMGB_SSRP1_UBTF:0.425961348587;MZF1:0.424099364675;NFIX:0.423527757767;BREu{core}:0.415016050112;TBP:0.397284229228;TAL1_TCF{3,4,12}:0.396424610743;SPZ1:0.392519742668;CRX:0.369507433792;TP53:0.360019533522;IKZF1:0.345474415287;ATF4:0.328662189873;HOX{A5,B5}:0.293947611076;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.293385451874;MAFB:0.28123330006;CDC5L:0.273003548653;NANOG:0.259074521545;PRDM1:0.250463329151;VSX1,2:0.214853527013;PRRX1,2:0.191613727393;LEF1_TCF7_TCF7L1,2:0.190524193283;NKX2-3_NKX2-5:0.173605331335;NKX2-1,4:0.171635803629;FOSL2:0.168897451962;HMX1:0.165462258094;HIF1A:0.153287304958;CUX2:0.151400451504;FOXM1:0.150901351761;GFI1B:0.123985555518;ELK1,4_GABP{A,B1}:0.117155084221;TEAD1:0.105553308734;NFY{A,B,C}:0.103599624211;NRF1:0.0725694419835;NKX3-1:0.0517704351655;GZF1:0.0260496009392;FOXD3:0.0246694672832;NFIL3:0.0221745194605;FOXL1:0.0208721083083;BACH2:0.012862664763;TFDP1:0.00413391335882;ATF5_CREB3:0.00283351833095;IKZF2:-0.0155878347393;RORA:-0.0475489841114;YY1:-0.0635803885761;NFE2L2:-0.0720636421652;STAT1,3:-0.109868703147;POU6F1:-0.114103117209;TLX2:-0.1150308572;GFI1:-0.128176216254;TGIF1:-0.138176864323;HLF:-0.144493915043;SPIB:-0.160566463139;UFEwm:-0.164663942887;SREBF1,2:-0.171888639237;ETS1,2:-0.183637723628;NR1H4:-0.186456318554;NR5A1,2:-0.205136511409;ONECUT1,2:-0.212079427664;FOS_FOS{B,L1}_JUN{B,D}:-0.212510867073;IRF1,2:-0.220754679575;NFKB1_REL_RELA:-0.226249163913;PAX1,9:-0.234678147788;DBP:-0.238646074195;IRF7:-0.24251097047;FOX{F1,F2,J1}:-0.24278374975;GATA4:-0.255857716279;SOX17:-0.270157297913;ALX4:-0.271719236946;CEBPA,B_DDIT3:-0.290770845176;SRF:-0.320471914711;ESRRA:-0.335047637184;RUNX1..3:-0.3623476039;SPI1:-0.402672258667;OCT4_SOX2{dimer}:-0.409940248213;FOXA2:-0.430382330025;ZNF143:-0.434772099451;ELF1,2,4:-0.450607212282;MEF2{A,B,C,D}:-0.477340911541;HMGA1,2:-0.481506075129;MYB:-0.502402162328;bHLH_family:-0.503255739619;NFE2L1:-0.518605504672;PAX4:-0.531973115225;FOX{I1,J2}:-0.548860866695;FOXP1:-0.575988199866;NFATC1..3:-0.581385011673;ALX1:-0.587647242631;HSF1,2:-0.593481767552;E2F1..5:-0.616510768641;DMAP1_NCOR{1,2}_SMARC:-0.652135238142;RBPJ:-0.658039821394;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.665748562601;HNF1A:-0.718078893038;PPARG:-0.718971460637;EN1,2:-0.7201393386;HNF4A_NR2F1,2:-0.72297807544;NR3C1:-0.724431036389;PAX8:-0.732755866656;GATA6:-0.745468510996;BPTF:-0.765772444444;STAT5{A,B}:-0.864464257365;T:-0.874477590544;NFE2:-0.891157978875;PITX1..3:-0.896120631695;NKX3-2:-0.940157256726;NANOG{mouse}:-0.943307800262;NKX6-1,2:-0.953885650055;POU5F1:-0.974942357088;TEF:-1.07437943105;PBX1:-1.11963415754;POU3F1..4:-1.12295956414;PDX1:-1.15659905179;AIRE:-1.22263327949;EVI1:-1.23949463473;HOX{A4,D4}:-1.27503967228;NKX2-2,8:-1.39521927752;ZBTB16:-1.43550163587;NR6A1:-1.43682077784;POU1F1:-1.65338578772;CDX1,2,4:-1.69582818297 | |top_motifs=GCM1,2:2.73962230528;TBX4,5:2.59529860541;RXRA_VDR{dimer}:2.45051692024;ATF6:2.34759287572;AR:2.1276936666;ZIC1..3:1.85998775508;RXR{A,B,G}:1.73063930514;EP300:1.60869833208;GLI1..3:1.59909419513;EBF1:1.51253638938;ARID5B:1.50764122233;ESR1:1.45594256865;RFX1:1.44577593493;LHX3,4:1.42358067495;HAND1,2:1.37734480808;MYOD1:1.28267332811;RFX2..5_RFXANK_RFXAP:1.24686598851;PATZ1:1.22297182152;SOX{8,9,10}:1.20009153687;HIC1:1.18322282053;XCPE1{core}:1.18025565925;EGR1..3:1.15616791572;TOPORS:1.12684625403;FOX{D1,D2}:1.12102526952;LMO2:1.11806509202;REST:1.09492625185;RREB1:1.05886650644;FOXO1,3,4:1.05632954908;GTF2I:1.04900616438;SMAD1..7,9:1.04623228594;TFAP2{A,C}:1.01370421406;SP1:1.01368137974;PAX5:1.01040400445;TFAP2B:1.00860882118;TFCP2:0.972892920431;ZNF423:0.933996316884;ZNF238:0.930520076683;MAZ:0.91540263654;STAT2,4,6:0.874244171352;MED-1{core}:0.822801025609;TLX1..3_NFIC{dimer}:0.772588539715;NHLH1,2:0.764192899083;TFAP4:0.749088851069;MTF1:0.747969306918;ATF2:0.729789375006;SOX5:0.709599024122;POU2F1..3:0.703621090866;PAX2:0.695994569859;CREB1:0.679888099936;SNAI1..3:0.678293570027;JUN:0.660333460237;HES1:0.656714308127;KLF4:0.625811731803;FOXQ1:0.624364832074;FOXP3:0.569693291758;ZNF384:0.553665186985;ADNP_IRX_SIX_ZHX:0.551422751719;ZNF148:0.529391554461;PAX6:0.519525247178;MYBL2:0.508745028472;ZBTB6:0.508138468938;GTF2A1,2:0.503559355857;ZEB1:0.50190375694;HOXA9_MEIS1:0.493231396277;ZFP161:0.485519687626;MTE{core}:0.484591761387;AHR_ARNT_ARNT2:0.474200002597;MYFfamily:0.448406150233;FOXN1:0.442409593673;SOX2:0.439016367971;HBP1_HMGB_SSRP1_UBTF:0.425961348587;MZF1:0.424099364675;NFIX:0.423527757767;BREu{core}:0.415016050112;TBP:0.397284229228;TAL1_TCF{3,4,12}:0.396424610743;SPZ1:0.392519742668;CRX:0.369507433792;TP53:0.360019533522;IKZF1:0.345474415287;ATF4:0.328662189873;HOX{A5,B5}:0.293947611076;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.293385451874;MAFB:0.28123330006;CDC5L:0.273003548653;NANOG:0.259074521545;PRDM1:0.250463329151;VSX1,2:0.214853527013;PRRX1,2:0.191613727393;LEF1_TCF7_TCF7L1,2:0.190524193283;NKX2-3_NKX2-5:0.173605331335;NKX2-1,4:0.171635803629;FOSL2:0.168897451962;HMX1:0.165462258094;HIF1A:0.153287304958;CUX2:0.151400451504;FOXM1:0.150901351761;GFI1B:0.123985555518;ELK1,4_GABP{A,B1}:0.117155084221;TEAD1:0.105553308734;NFY{A,B,C}:0.103599624211;NRF1:0.0725694419835;NKX3-1:0.0517704351655;GZF1:0.0260496009392;FOXD3:0.0246694672832;NFIL3:0.0221745194605;FOXL1:0.0208721083083;BACH2:0.012862664763;TFDP1:0.00413391335882;ATF5_CREB3:0.00283351833095;IKZF2:-0.0155878347393;RORA:-0.0475489841114;YY1:-0.0635803885761;NFE2L2:-0.0720636421652;STAT1,3:-0.109868703147;POU6F1:-0.114103117209;TLX2:-0.1150308572;GFI1:-0.128176216254;TGIF1:-0.138176864323;HLF:-0.144493915043;SPIB:-0.160566463139;UFEwm:-0.164663942887;SREBF1,2:-0.171888639237;ETS1,2:-0.183637723628;NR1H4:-0.186456318554;NR5A1,2:-0.205136511409;ONECUT1,2:-0.212079427664;FOS_FOS{B,L1}_JUN{B,D}:-0.212510867073;IRF1,2:-0.220754679575;NFKB1_REL_RELA:-0.226249163913;PAX1,9:-0.234678147788;DBP:-0.238646074195;IRF7:-0.24251097047;FOX{F1,F2,J1}:-0.24278374975;GATA4:-0.255857716279;SOX17:-0.270157297913;ALX4:-0.271719236946;CEBPA,B_DDIT3:-0.290770845176;SRF:-0.320471914711;ESRRA:-0.335047637184;RUNX1..3:-0.3623476039;SPI1:-0.402672258667;OCT4_SOX2{dimer}:-0.409940248213;FOXA2:-0.430382330025;ZNF143:-0.434772099451;ELF1,2,4:-0.450607212282;MEF2{A,B,C,D}:-0.477340911541;HMGA1,2:-0.481506075129;MYB:-0.502402162328;bHLH_family:-0.503255739619;NFE2L1:-0.518605504672;PAX4:-0.531973115225;FOX{I1,J2}:-0.548860866695;FOXP1:-0.575988199866;NFATC1..3:-0.581385011673;ALX1:-0.587647242631;HSF1,2:-0.593481767552;E2F1..5:-0.616510768641;DMAP1_NCOR{1,2}_SMARC:-0.652135238142;RBPJ:-0.658039821394;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.665748562601;HNF1A:-0.718078893038;PPARG:-0.718971460637;EN1,2:-0.7201393386;HNF4A_NR2F1,2:-0.72297807544;NR3C1:-0.724431036389;PAX8:-0.732755866656;GATA6:-0.745468510996;BPTF:-0.765772444444;STAT5{A,B}:-0.864464257365;T:-0.874477590544;NFE2:-0.891157978875;PITX1..3:-0.896120631695;NKX3-2:-0.940157256726;NANOG{mouse}:-0.943307800262;NKX6-1,2:-0.953885650055;POU5F1:-0.974942357088;TEF:-1.07437943105;PBX1:-1.11963415754;POU3F1..4:-1.12295956414;PDX1:-1.15659905179;AIRE:-1.22263327949;EVI1:-1.23949463473;HOX{A4,D4}:-1.27503967228;NKX2-2,8:-1.39521927752;ZBTB16:-1.43550163587;NR6A1:-1.43682077784;POU1F1:-1.65338578772;CDX1,2,4:-1.69582818297 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1308-22E9;search_select_hide=table117:1308-22E9 | |||
}} | }} |
Latest revision as of 18:50, 4 June 2020
Name: | pituitary gland, neonate N00 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs11190 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11190
0 | 0 |
1 | 0.128 |
10 | 0 |
100 | 0 |
1000 | 0 |
1001 | -0.0749 |
1002 | 0 |
1003 | 0.203 |
1004 | 0.244 |
1005 | -0.0389 |
1006 | 0.17 |
1007 | -0.258 |
1008 | 0 |
1009 | 0.0165 |
101 | -0.15 |
1010 | 0 |
1011 | 0.115 |
1012 | 0 |
1013 | 0.157 |
1014 | 0.441 |
1015 | 0.106 |
1016 | 0.24 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0.115 |
1022 | 0.0573 |
1023 | 0 |
1024 | 0.192 |
1025 | 0 |
1026 | 0.086 |
1027 | 0 |
1028 | 0 |
1029 | -0.0674 |
103 | 0.394 |
1030 | 0 |
1031 | 0.441 |
1032 | 0.0282 |
1033 | 0.14 |
1034 | 0 |
1035 | 0 |
1036 | -0.0932 |
1037 | 0 |
1038 | 0.0276 |
1039 | 0.0487 |
104 | 0 |
1040 | 0.174 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11190
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11190
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.027 |
10 | 10 | 0.0143 |
100 | 100 | 0.925 |
101 | 101 | 0.572 |
102 | 102 | 0.69 |
103 | 103 | 0.0551 |
104 | 104 | 0.691 |
105 | 105 | 0.873 |
106 | 106 | 0.186 |
107 | 107 | 0.18 |
108 | 108 | 0.537 |
109 | 109 | 0.645 |
11 | 11 | 0.282 |
110 | 110 | 0.0324 |
111 | 111 | 0.0367 |
112 | 112 | 0.0737 |
113 | 113 | 0.837 |
114 | 114 | 0.38 |
115 | 115 | 0.589 |
116 | 116 | 0.807 |
117 | 117 | 0.00596 |
118 | 118 | 0.245 |
119 | 119 | 0.171 |
12 | 12 | 0.847 |
120 | 120 | 0.864 |
121 | 121 | 0.732 |
122 | 122 | 0.182 |
123 | 123 | 0.803 |
124 | 124 | 0.744 |
125 | 125 | 0.333 |
126 | 126 | 0.171 |
127 | 127 | 0.14 |
128 | 128 | 0.314 |
129 | 129 | 0.315 |
13 | 13 | 0.00542 |
130 | 130 | 0.716 |
131 | 131 | 0.274 |
132 | 132 | 0.803 |
133 | 133 | 0.427 |
134 | 134 | 0.822 |
135 | 135 | 0.22 |
136 | 136 | 0.0729 |
137 | 137 | 0.688 |
138 | 138 | 0.333 |
139 | 139 | 0.0394 |
14 | 14 | 0.928 |
140 | 140 | 0.0112 |
141 | 141 | 0.857 |
142 | 142 | 0.0824 |
143 | 143 | 0.719 |
144 | 144 | 0.627 |
145 | 145 | 0.0916 |
146 | 146 | 0.965 |
147 | 147 | 0.748 |
148 | 148 | 0.406 |
149 | 149 | 0.805 |
15 | 15 | 0.0609 |
150 | 150 | 0.418 |
151 | 151 | 0.734 |
152 | 152 | 0.263 |
153 | 153 | 0.481 |
154 | 154 | 0.198 |
155 | 155 | 0.873 |
156 | 156 | 0.00472 |
157 | 157 | 0.383 |
158 | 158 | 0.151 |
159 | 159 | 0.158 |
160 | 160 | 0.194 |
161 | 161 | 0.68 |
162 | 162 | 0.681 |
163 | 163 | 0.172 |
164 | 164 | 0.0356 |
165 | 165 | 0.262 |
166 | 166 | 0.89 |
167 | 167 | 0.038 |
168 | 168 | 0.535 |
169 | 169 | 0.146 |
17 | 17 | 0.456 |
18 | 18 | 0.744 |
19 | 19 | 0.156 |
2 | 2 | 0.419 |
20 | 20 | 0.464 |
21 | 21 | 0.73 |
22 | 22 | 0.628 |
23 | 23 | 0.571 |
24 | 24 | 0.576 |
25 | 25 | 0.307 |
26 | 26 | 0.00411 |
27 | 27 | 0.924 |
28 | 28 | 0.319 |
29 | 29 | 0.0427 |
3 | 3 | 0.157 |
30 | 30 | 0.427 |
31 | 31 | 0.884 |
32 | 32 | 0.941 |
33 | 33 | 0.788 |
34 | 34 | 0.562 |
35 | 35 | 0.281 |
36 | 36 | 0.545 |
37 | 37 | 0.123 |
38 | 38 | 0.617 |
39 | 39 | 0.602 |
4 | 4 | 0.606 |
40 | 40 | 0.823 |
41 | 41 | 0.418 |
42 | 42 | 0.422 |
43 | 43 | 0.0636 |
44 | 44 | 0.444 |
45 | 45 | 0.966 |
46 | 46 | 0.0279 |
47 | 47 | 0.29 |
48 | 48 | 0.229 |
49 | 49 | 0.0562 |
5 | 5 | 0.0325 |
50 | 50 | 0.77 |
51 | 51 | 0.46 |
52 | 52 | 0.727 |
53 | 53 | 0.828 |
54 | 54 | 0.506 |
55 | 55 | 0.329 |
56 | 56 | 0.868 |
57 | 57 | 0.223 |
58 | 58 | 0.169 |
59 | 59 | 0.853 |
6 | 6 | 0.622 |
60 | 60 | 0.142 |
61 | 61 | 0.0882 |
62 | 62 | 0.0692 |
63 | 63 | 0.277 |
64 | 64 | 0.815 |
65 | 65 | 0.633 |
66 | 66 | 0.298 |
67 | 67 | 0.747 |
68 | 68 | 0.28 |
69 | 69 | 0.904 |
7 | 7 | 0.0401 |
70 | 70 | 0.163 |
71 | 71 | 0.0142 |
72 | 72 | 0.605 |
73 | 73 | 0.737 |
74 | 74 | 0.109 |
75 | 75 | 0.0738 |
76 | 76 | 0.292 |
77 | 77 | 0.645 |
78 | 78 | 0.0022 |
79 | 79 | 0.767 |
8 | 8 | 0.0533 |
80 | 80 | 0.307 |
81 | 81 | 0.525 |
82 | 82 | 0.454 |
83 | 83 | 0.342 |
84 | 84 | 0.559 |
85 | 85 | 0.0895 |
86 | 86 | 0.325 |
87 | 87 | 0.0433 |
88 | 88 | 0.179 |
89 | 89 | 0.231 |
9 | 9 | 0.754 |
90 | 90 | 0.066 |
91 | 91 | 0.294 |
92 | 92 | 0.217 |
93 | 93 | 0.0135 |
94 | 94 | 0.0398 |
95 | 95 | 0.798 |
96 | 96 | 0.135 |
97 | 97 | 0.7 |
98 | 98 | 0.828 |
99 | 99 | 0.784 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11190
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011507 mouse pituitary gland- neonate N00 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000007 (pituitary gland)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000304 (mouse neonate N0 sample)
0011507 (mouse pituitary gland- neonate N00 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)